Wall clock time and date at job start Tue Mar 31 2020 07:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47424 * 2 1 4 4 C 1.53004 * 109.46552 * 240.00115 * 2 1 3 5 5 C 1.50707 * 109.47178 * 60.00372 * 4 2 1 6 6 H 1.07997 * 119.99599 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99930 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99567 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00342 * 0.02562 * 7 5 4 10 10 H 1.48509 * 109.47077 * 89.99771 * 9 7 5 11 11 H 1.48498 * 109.47176 * 209.99516 * 9 7 5 12 12 H 1.48503 * 109.47056 * 329.99750 * 9 7 5 13 13 C 1.52997 * 109.47154 * 120.00645 * 2 1 3 14 14 N 1.46500 * 109.47160 * 299.99483 * 13 2 1 15 15 C 1.34773 * 119.99913 * 179.97438 * 14 13 2 16 16 O 1.21274 * 120.00284 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99652 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.46901 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47085 * 179.97438 * 18 17 15 20 20 C 1.50707 * 109.47301 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 18 26 26 H 1.09007 * 109.46561 * 299.99502 * 1 2 3 27 27 H 1.09002 * 109.47023 * 59.99067 * 1 2 3 28 28 H 1.08996 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46957 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47324 * 300.00743 * 3 2 1 31 31 H 1.09007 * 109.46845 * 60.00672 * 3 2 1 32 32 H 1.09000 * 109.46915 * 179.97438 * 4 2 1 33 33 H 1.08992 * 109.47784 * 300.00284 * 4 2 1 34 34 H 0.97003 * 120.00004 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47204 * 179.97438 * 13 2 1 36 36 H 1.09004 * 109.47310 * 59.99560 * 13 2 1 37 37 H 0.96998 * 119.99656 * 0.02562 * 14 13 2 38 38 H 1.08992 * 109.47447 * 60.00244 * 17 15 14 39 39 H 1.08999 * 109.46636 * 299.99870 * 17 15 14 40 40 H 1.08995 * 109.47671 * 59.99705 * 18 17 15 41 41 H 1.09004 * 109.46984 * 299.99721 * 18 17 15 42 42 H 1.09005 * 109.47610 * 59.99944 * 19 18 17 43 43 H 1.09000 * 109.47256 * 299.99285 * 19 18 17 44 44 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 45 45 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 46 46 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 47 47 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 48 48 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9164 0.8672 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 1.4321 0.1383 -4.8058 9 14 2.9447 -2.0003 -3.9036 10 1 2.0859 -3.2110 -3.9496 11 1 3.7369 -1.9075 -5.1562 12 1 3.8648 -2.0899 -2.7414 13 6 2.0400 -0.7214 1.2491 14 7 1.5518 -0.0308 2.4454 15 6 1.8770 -0.4917 3.6694 16 8 2.5742 -1.4778 3.7806 17 6 1.3743 0.2183 4.9000 18 6 1.8844 -0.5030 6.1491 19 6 1.3745 0.2182 7.3984 20 6 1.8764 -0.4926 8.6288 21 6 3.0844 -0.1278 9.1934 22 6 3.5445 -0.7794 10.3223 23 6 2.7965 -1.7955 10.8871 24 6 1.5911 -2.1639 10.3194 25 6 1.1287 -1.5091 9.1932 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 3.1299 -0.7209 -1.2496 33 1 1.6766 -1.7488 -1.2495 34 1 1.6664 -0.1930 -5.6869 35 1 3.1301 -0.7218 1.2489 36 1 1.6766 -1.7491 1.2491 37 1 0.9939 0.7576 2.3564 38 1 0.2843 0.2184 4.8997 39 1 1.7377 1.2460 4.9003 40 1 2.9743 -0.5027 6.1493 41 1 1.5213 -1.5308 6.1489 42 1 0.2845 0.2183 7.3986 43 1 1.7380 1.2459 7.3985 44 1 3.6687 0.6664 8.7524 45 1 4.4884 -0.4947 10.7631 46 1 3.1558 -2.3043 11.7693 47 1 1.0087 -2.9606 10.7581 48 1 0.1846 -1.7936 8.7526 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346025977.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:17 Heat of formation + Delta-G solvation = -67.659564 kcal Electronic energy + Delta-G solvation = -23649.699447 eV Core-core repulsion = 20281.216501 eV Total energy + Delta-G solvation = -3368.482945 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.90808 -40.09832 -38.73478 -35.82157 -35.17345 -33.97737 -32.14617 -31.72636 -29.79163 -28.49271 -27.97892 -26.93998 -24.54730 -23.42453 -23.28155 -21.63883 -21.22624 -19.73830 -18.90921 -18.02271 -17.45537 -16.94457 -16.82165 -16.17255 -16.13176 -15.90488 -15.48686 -15.33421 -14.78963 -14.70621 -14.33854 -14.21365 -14.17937 -14.15054 -13.83023 -13.70328 -12.96161 -12.90006 -12.82981 -12.75638 -12.56479 -12.40299 -12.30488 -12.16501 -11.92693 -11.78611 -11.72672 -11.51891 -11.50140 -11.28548 -10.93437 -10.75172 -10.71485 -10.00202 -9.78421 -9.54844 -8.23410 -6.23310 0.48958 0.53671 1.34368 1.37305 1.47235 1.74127 2.32609 2.37836 2.92283 3.11839 3.81212 3.85566 3.96871 3.97454 4.06020 4.16914 4.18983 4.20670 4.29193 4.37551 4.57668 4.62969 4.66264 4.68734 4.71460 4.77792 4.82592 4.84632 4.92284 4.95968 5.03202 5.09983 5.15287 5.22743 5.27373 5.29778 5.38074 5.40529 5.43392 5.52504 5.58049 5.61766 5.66315 5.69999 5.76447 5.78410 6.17870 6.37130 6.66618 6.83504 7.35752 7.39408 8.92001 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.034986 B = 0.002041 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.121659 B =13716.208659 C =14014.713619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.059 4.059 3 C -0.123 4.123 4 C -0.004 4.004 5 C -0.501 4.501 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.949 5.949 9 Si 0.933 3.067 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.254 1.254 13 C 0.138 3.862 14 N -0.713 5.713 15 C 0.502 3.498 16 O -0.596 6.596 17 C -0.131 4.131 18 C -0.091 4.091 19 C -0.074 4.074 20 C -0.093 4.093 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.139 4.139 24 C -0.131 4.131 25 C -0.133 4.133 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.012 0.988 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.414 0.586 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.131 0.869 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.243 1.765 31.460 31.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.059 4.059 3 C -0.181 4.181 4 C -0.042 4.042 5 C -0.539 4.539 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.591 5.591 9 Si 0.759 3.241 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.178 1.178 13 C 0.013 3.987 14 N -0.366 5.366 15 C 0.290 3.710 16 O -0.477 6.477 17 C -0.170 4.170 18 C -0.129 4.129 19 C -0.111 4.111 20 C -0.093 4.093 21 C -0.151 4.151 22 C -0.149 4.149 23 C -0.156 4.156 24 C -0.149 4.149 25 C -0.151 4.151 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.252 0.748 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.154 0.846 47 H 0.153 0.847 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.750 1.073 31.345 31.372 hybrid contribution 0.399 -0.597 -1.080 1.297 sum -0.351 0.476 30.265 30.271 Atomic orbital electron populations 1.21707 0.93778 1.01193 1.01412 1.20561 0.96587 0.96172 0.92612 1.21702 1.00141 0.94816 1.01414 1.19577 0.95844 0.95454 0.93356 1.21369 1.30209 1.12321 0.90039 0.92831 1.25831 0.97472 0.99875 0.95964 1.70037 1.48068 1.42610 0.98403 0.85907 0.79883 0.80472 0.77865 1.19737 1.21392 1.17768 1.21218 0.98000 0.95502 0.83931 1.46049 1.53330 1.32238 1.04960 1.21537 0.79405 0.84178 0.85841 1.90684 1.40431 1.28951 1.87615 1.21738 1.04187 1.01296 0.89779 1.21198 1.00459 0.98924 0.92363 1.20624 1.01786 0.99045 0.89654 1.20161 0.95123 0.96933 0.97100 1.21343 0.96185 1.00899 0.96635 1.21450 1.00487 0.96559 0.96394 1.21448 0.95347 0.97973 1.00879 1.21451 0.96862 1.00169 0.96407 1.21341 1.00679 0.96369 0.96669 0.90923 0.93620 0.93839 0.93880 0.93612 0.90916 0.96917 0.97053 0.92860 0.93200 0.93136 0.74783 0.86031 0.86042 0.93152 0.93144 0.89305 0.89303 0.85114 0.84655 0.84584 0.84654 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 2 C -0.06 -2.06 0.54 -52.18 -0.03 -2.09 16 3 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 4 C 0.00 -0.20 3.11 29.85 0.09 -0.11 16 5 C -0.50 -27.20 8.20 25.60 0.21 -26.99 16 6 H 0.05 3.12 5.92 -2.91 -0.02 3.10 16 7 C 0.00 0.28 5.47 84.65 0.46 0.74 16 8 N -0.95 -58.48 13.96 21.45 0.30 -58.18 16 9 Si 0.93 44.70 27.47 68.60 1.88 46.58 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.25 -11.55 6.54 99.48 0.65 -10.90 16 13 C 0.14 4.38 4.56 86.38 0.39 4.78 16 14 N -0.71 -17.04 4.96 -463.06 -2.30 -19.33 16 15 C 0.50 12.53 7.83 87.66 0.69 13.22 16 16 O -0.60 -20.97 15.98 -3.01 -0.05 -21.02 16 17 C -0.13 -1.86 5.70 29.85 0.17 -1.69 16 18 C -0.09 -1.56 4.49 30.59 0.14 -1.42 16 19 C -0.07 -0.90 5.34 29.85 0.16 -0.74 16 20 C -0.09 -1.49 5.13 -19.86 -0.10 -1.59 16 21 C -0.13 -2.10 9.70 22.27 0.22 -1.89 16 22 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 23 C -0.14 -2.01 10.05 22.27 0.22 -1.78 16 24 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 25 C -0.13 -2.10 9.70 22.27 0.22 -1.88 16 26 H 0.07 1.74 6.86 -2.38 -0.02 1.72 16 27 H 0.04 1.73 6.62 -2.39 -0.02 1.72 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.74 6.62 -2.39 -0.02 1.72 16 31 H 0.07 1.74 6.86 -2.38 -0.02 1.73 16 32 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 33 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.41 7.35 6.16 -92.71 -0.57 6.78 16 38 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 41 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 42 H 0.09 0.82 8.09 -2.38 -0.02 0.80 16 43 H 0.09 0.82 8.09 -2.39 -0.02 0.80 16 44 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 46 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 47 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 48 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -72.13 382.77 4.58 -67.55 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.29 Total: 16.18 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 4.45 Total: -31.76 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -2.00 Total: -77.52 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.05 Total: -21.02 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -72.13 4.58 -67.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346025977.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.112 kcal (2) G-P(sol) polarization free energy of solvation -72.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds