Wall clock time and date at job start Tue Mar 31 2020 09:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47150 * 2 1 4 4 C 1.52997 * 109.47286 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47268 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99619 * 269.99869 * 5 4 3 7 7 C 1.53007 * 109.46879 * 269.99760 * 6 5 4 8 8 C 1.34775 * 120.00272 * 89.99708 * 5 4 3 9 9 O 1.21284 * 119.99745 * 359.97438 * 8 5 4 10 10 C 1.50698 * 119.99717 * 180.27663 * 8 5 4 11 11 C 1.53004 * 109.46712 * 179.72168 * 10 8 5 12 12 H 1.08997 * 109.47178 * 304.99960 * 11 10 8 13 13 C 1.50702 * 109.47094 * 65.00052 * 11 10 8 14 14 H 1.07995 * 120.00062 * 234.67882 * 13 11 10 15 15 C 1.37881 * 119.99672 * 54.67361 * 13 11 10 16 16 N 1.31515 * 120.00342 * 4.89817 * 15 13 11 17 17 Si 1.86807 * 119.99862 * 184.89307 * 15 13 11 18 18 H 1.48497 * 109.47217 * 90.00078 * 17 15 13 19 19 H 1.48496 * 109.47250 * 210.00577 * 17 15 13 20 20 H 1.48507 * 109.46866 * 330.00158 * 17 15 13 21 21 C 1.50700 * 109.46965 * 184.99880 * 11 10 8 22 22 C 1.38234 * 119.99820 * 151.49142 * 21 11 10 23 23 C 1.38243 * 119.99964 * 179.79138 * 22 21 11 24 24 C 1.38237 * 119.99596 * 0.43197 * 23 22 21 25 25 C 1.38233 * 120.00114 * 359.82045 * 24 23 22 26 26 C 1.38228 * 120.00219 * 359.97300 * 25 24 23 27 27 H 1.09002 * 109.47250 * 299.99730 * 1 2 3 28 28 H 1.08997 * 109.47165 * 60.00001 * 1 2 3 29 29 H 1.09006 * 109.47188 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47250 * 240.00270 * 2 1 3 31 31 H 1.08997 * 109.47165 * 119.99999 * 2 1 3 32 32 H 1.09001 * 109.47546 * 59.99824 * 3 2 1 33 33 H 1.09006 * 109.47097 * 299.99855 * 3 2 1 34 34 H 1.08996 * 109.47605 * 59.99609 * 4 3 2 35 35 H 1.08997 * 109.46795 * 299.99855 * 4 3 2 36 36 H 1.09003 * 109.47327 * 29.99545 * 6 5 4 37 37 H 1.08992 * 109.46919 * 150.00179 * 6 5 4 38 38 H 1.08996 * 109.46800 * 180.02562 * 7 6 5 39 39 H 1.08995 * 109.47016 * 300.00348 * 7 6 5 40 40 H 1.08994 * 109.46850 * 59.99954 * 7 6 5 41 41 H 1.08997 * 109.47423 * 299.72010 * 10 8 5 42 42 H 1.09000 * 109.47231 * 59.72475 * 10 8 5 43 43 H 0.97002 * 119.99795 * 179.97438 * 16 15 13 44 44 H 1.08000 * 120.00124 * 359.97438 * 22 21 11 45 45 H 1.07996 * 120.00217 * 180.26784 * 23 22 21 46 46 H 1.07996 * 119.99674 * 179.83568 * 24 23 22 47 47 H 1.08002 * 119.99929 * 179.97438 * 25 24 23 48 48 H 1.08004 * 120.00627 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3019 3.5151 -1.2685 7 6 5.7468 3.2749 -1.7109 8 6 4.2834 3.4585 1.1674 9 8 4.0812 2.8863 2.2175 10 6 4.7798 4.8814 1.1679 11 6 4.9450 5.3633 2.6106 12 1 4.0060 5.2303 3.1479 13 6 6.0282 4.5628 3.2867 14 1 5.8211 4.0488 4.2136 15 6 7.2836 4.4867 2.7217 16 7 7.5642 5.1891 1.6458 17 14 8.5860 3.3860 3.4844 18 1 8.5043 2.0314 2.8814 19 1 9.9312 3.9609 3.2297 20 1 8.3577 3.2906 4.9487 21 6 5.3228 6.8221 2.6128 22 6 4.9703 7.6258 3.6809 23 6 5.3207 8.9631 3.6848 24 6 6.0156 9.4986 2.6166 25 6 6.3635 8.6961 1.5461 26 6 6.0169 7.3580 1.5441 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9330 0.9288 -0.8908 35 1 3.9336 0.9286 0.8891 36 1 3.6209 3.1313 -2.0282 37 1 4.1350 4.5841 -1.1375 38 1 5.9282 3.7896 -2.6544 39 1 6.4279 3.6585 -0.9513 40 1 5.9137 2.2058 -1.8418 41 1 5.7407 4.9312 0.6559 42 1 4.0601 5.5174 0.6526 43 1 8.4476 5.1358 1.2485 44 1 4.4239 7.2083 4.5136 45 1 5.0491 9.5900 4.5212 46 1 6.2870 10.5439 2.6185 47 1 6.9061 9.1146 0.7114 48 1 6.2890 6.7308 0.7080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353310804.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:47 Heat of formation + Delta-G solvation = -28.303502 kcal Electronic energy + Delta-G solvation = -25797.152991 eV Core-core repulsion = 22430.376653 eV Total energy + Delta-G solvation = -3366.776339 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.32086 -38.10542 -35.94227 -34.52448 -34.16803 -31.09017 -30.58261 -29.80781 -28.87972 -27.85390 -25.83825 -23.61472 -23.01703 -22.15006 -21.35129 -20.97760 -19.67068 -18.05634 -16.64115 -16.18590 -15.60740 -15.42292 -15.07466 -15.01194 -14.45162 -13.84046 -13.71916 -13.56519 -13.33600 -13.01656 -12.92955 -12.77161 -12.45952 -12.21314 -12.06459 -11.76495 -11.53731 -11.48770 -11.39659 -11.14157 -11.11275 -10.96135 -10.87491 -10.76766 -10.71230 -10.44006 -10.30121 -10.13723 -9.91086 -9.25745 -9.13304 -8.68909 -8.36995 -8.03141 -7.78419 -7.41628 -5.94874 -4.03970 2.51801 2.60494 3.32776 3.38269 3.44162 3.64820 3.73903 4.45693 4.97470 4.99125 4.99775 5.15331 5.24635 5.27084 5.33487 5.54974 5.65239 5.68833 5.76553 5.80146 5.81854 5.83120 5.90376 5.94965 6.02578 6.03433 6.10498 6.17888 6.18520 6.38539 6.41082 6.45647 6.48541 6.59587 6.63954 6.74321 6.80139 7.13855 7.17444 7.23974 7.30020 7.51045 7.57704 7.71452 7.96121 8.08940 8.20459 8.21909 8.38311 8.92372 9.24859 9.58811 10.99172 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.004716 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.374089 B = 5935.628436 C = 6594.561742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.133 4.133 4 C 0.118 3.882 5 N -0.630 5.630 6 C 0.114 3.886 7 C -0.174 4.174 8 C 0.526 3.474 9 O -0.526 6.526 10 C -0.137 4.137 11 C 0.087 3.913 12 H 0.036 0.964 13 C -0.467 4.467 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.890 3.110 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.026 4.026 22 C -0.132 4.132 23 C -0.141 4.141 24 C -0.155 4.155 25 C -0.143 4.143 26 C -0.068 4.068 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.135 0.865 42 H 0.050 0.950 43 H 0.259 0.741 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.625 -2.231 -8.646 11.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.171 4.171 4 C -0.006 4.006 5 N -0.366 5.366 6 C -0.010 4.010 7 C -0.232 4.232 8 C 0.316 3.684 9 O -0.400 6.400 10 C -0.177 4.177 11 C 0.068 3.932 12 H 0.054 0.946 13 C -0.505 4.505 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.718 3.282 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.026 4.026 22 C -0.151 4.151 23 C -0.160 4.160 24 C -0.173 4.173 25 C -0.162 4.162 26 C -0.087 4.087 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.152 0.848 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.119 0.881 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.558 -2.515 -8.153 11.398 hybrid contribution 1.084 -0.566 0.330 1.267 sum -6.474 -3.081 -7.823 10.611 Atomic orbital electron populations 1.21755 0.96044 1.01212 1.01766 1.21451 0.95710 0.96930 1.01880 1.21970 0.96385 0.96531 1.02264 1.21275 0.93106 0.83930 1.02239 1.48173 1.68219 1.13682 1.06505 1.21387 0.96206 0.97955 0.85462 1.22235 0.97761 1.01433 1.01793 1.21156 0.75356 0.89757 0.82116 1.90598 1.50358 1.68159 1.30923 1.21986 1.03067 0.89862 1.02801 1.17652 0.96158 0.87852 0.91580 0.94601 1.20972 0.94501 1.26813 1.08214 0.92364 1.24859 0.98069 0.95472 0.95456 1.69678 1.21363 1.40219 1.21648 0.86605 0.80828 0.80844 0.79879 1.20946 1.21441 1.20036 1.20345 0.94299 0.95802 0.92201 1.20904 1.02108 0.93402 0.98650 1.20797 1.01433 0.95586 0.98160 1.20759 1.02355 0.98543 0.95623 1.21042 1.01857 0.95105 0.98148 1.21353 0.94617 0.92818 0.99884 0.92711 0.92968 0.93036 0.92284 0.91858 0.91500 0.92386 0.91828 0.90344 0.91688 0.90286 0.92267 0.90778 0.93221 0.84806 0.93203 0.93023 0.87701 0.88128 0.88332 0.88114 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.12 -1.33 5.93 -26.73 -0.16 -1.48 16 3 C -0.13 -1.74 5.54 -26.73 -0.15 -1.88 16 4 C 0.12 1.77 5.41 -4.04 -0.02 1.74 16 5 N -0.63 -10.75 2.47 -173.69 -0.43 -11.18 16 6 C 0.11 1.56 5.94 -4.04 -0.02 1.54 16 7 C -0.17 -2.40 10.24 37.16 0.38 -2.02 16 8 C 0.53 11.29 7.42 -10.99 -0.08 11.21 16 9 O -0.53 -13.16 14.56 5.55 0.08 -13.08 16 10 C -0.14 -2.95 2.63 -27.88 -0.07 -3.03 16 11 C 0.09 2.10 1.97 -92.92 -0.18 1.92 16 12 H 0.04 0.89 7.91 -51.93 -0.41 0.48 16 13 C -0.47 -12.61 7.27 -34.44 -0.25 -12.86 16 14 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 15 C 0.06 1.60 5.12 -17.82 -0.09 1.51 16 16 N -0.89 -22.45 7.99 55.43 0.44 -22.01 16 17 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.03 -0.59 4.69 -104.62 -0.49 -1.08 16 22 C -0.13 -2.85 9.71 -39.58 -0.38 -3.24 16 23 C -0.14 -2.74 10.05 -39.58 -0.40 -3.14 16 24 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 25 C -0.14 -2.84 10.05 -39.59 -0.40 -3.24 16 26 C -0.07 -1.50 7.45 -39.58 -0.30 -1.79 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.08 1.36 7.42 -51.93 -0.39 0.97 16 36 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 37 H 0.08 1.08 6.43 -51.93 -0.33 0.75 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.27 7.24 -51.93 -0.38 0.89 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.13 3.01 3.78 -51.93 -0.20 2.81 16 42 H 0.05 0.97 7.40 -51.93 -0.38 0.58 16 43 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 44 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 45 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 46 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 48 H 0.14 3.09 5.18 -52.48 -0.27 2.82 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -28.74 378.39 -10.11 -38.85 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.24 Total: 5.37 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -2.65 Total: -20.26 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.01 Total: -33.19 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.08 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.74 -10.11 -38.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353310804.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.550 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds