Wall clock time and date at job start Tue Mar 31 2020 09:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47183 * 2 1 4 4 C 1.52997 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47184 * 54.99697 * 4 3 2 6 6 C 1.52998 * 109.47200 * 174.99609 * 4 3 2 7 7 N 1.46500 * 109.47308 * 294.99978 * 4 3 2 8 8 C 1.46500 * 119.99758 * 300.00250 * 7 4 3 9 9 C 1.34777 * 120.00469 * 119.99795 * 7 4 3 10 10 O 1.21285 * 119.99578 * 359.72649 * 9 7 4 11 11 C 1.50703 * 120.00001 * 180.02562 * 9 7 4 12 12 C 1.52997 * 109.46971 * 179.72588 * 11 9 7 13 13 H 1.09001 * 109.47415 * 54.99319 * 12 11 9 14 14 C 1.50698 * 109.46894 * 294.99896 * 12 11 9 15 15 H 1.08000 * 120.00217 * 325.12378 * 14 12 11 16 16 C 1.37878 * 120.00342 * 145.13046 * 14 12 11 17 17 N 1.31511 * 120.00333 * 184.98462 * 16 14 12 18 18 Si 1.86801 * 119.99636 * 4.98271 * 16 14 12 19 19 H 1.48499 * 109.47178 * 84.73618 * 18 16 14 20 20 H 1.48501 * 109.47227 * 204.73339 * 18 16 14 21 21 H 1.48499 * 109.47191 * 324.73376 * 18 16 14 22 22 C 1.50695 * 109.47164 * 174.99955 * 12 11 9 23 23 C 1.38231 * 120.00541 * 64.68860 * 22 12 11 24 24 C 1.38229 * 120.00690 * 179.79152 * 23 22 12 25 25 C 1.38241 * 119.99558 * 0.43684 * 24 23 22 26 26 C 1.38235 * 119.99850 * 359.81797 * 25 24 23 27 27 C 1.38231 * 120.00050 * 359.97433 * 26 25 24 28 28 H 1.09002 * 109.47353 * 300.00436 * 1 2 3 29 29 H 1.09000 * 109.47123 * 59.99894 * 1 2 3 30 30 H 1.09006 * 109.47477 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47353 * 239.99564 * 2 1 3 32 32 H 1.08999 * 109.46871 * 119.99621 * 2 1 3 33 33 H 1.08993 * 109.47208 * 59.99755 * 3 2 1 34 34 H 1.08999 * 109.46907 * 299.99598 * 3 2 1 35 35 H 1.08991 * 109.47132 * 299.99777 * 6 4 3 36 36 H 1.09004 * 109.46980 * 59.99963 * 6 4 3 37 37 H 1.09000 * 109.46995 * 179.97438 * 6 4 3 38 38 H 1.09000 * 109.47120 * 269.99952 * 8 7 4 39 39 H 1.09003 * 109.47495 * 29.99469 * 8 7 4 40 40 H 1.09000 * 109.47520 * 149.99594 * 8 7 4 41 41 H 1.08997 * 109.46817 * 299.72289 * 11 9 7 42 42 H 1.08996 * 109.47482 * 59.72256 * 11 9 7 43 43 H 0.96998 * 119.99721 * 179.97438 * 17 16 14 44 44 H 1.08007 * 119.99554 * 359.97438 * 23 22 12 45 45 H 1.07997 * 120.00611 * 180.27286 * 24 23 22 46 46 H 1.07997 * 120.00071 * 179.83024 * 25 24 23 47 47 H 1.08003 * 119.99588 * 179.97438 * 26 25 24 48 48 H 1.08001 * 119.99944 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0800 2.8795 -0.1252 7 7 4.0578 0.8590 1.2527 8 6 3.7033 1.4738 2.5344 9 6 4.8327 -0.2435 1.2256 10 8 5.1220 -0.7553 0.1648 11 6 5.3340 -0.8440 2.5137 12 6 6.1785 -2.0817 2.2046 13 1 6.9754 -1.8139 1.5108 14 6 5.3067 -3.1422 1.5831 15 1 4.2795 -3.2502 1.8987 16 6 5.8204 -3.9748 0.6115 17 7 5.0352 -4.8341 -0.0005 18 14 7.6318 -3.8821 0.1645 19 1 8.4173 -4.7208 1.1052 20 1 7.8257 -4.3788 -1.2215 21 1 8.0924 -2.4732 0.2544 22 6 6.7804 -2.6107 3.4809 23 6 5.9613 -3.1069 4.4777 24 6 6.5136 -3.5961 5.6466 25 6 7.8846 -3.5808 5.8225 26 6 8.7035 -3.0797 4.8279 27 6 8.1513 -2.5945 3.6572 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.7171 3.3135 -1.0567 36 1 3.7163 3.4691 0.7164 37 1 5.1700 2.8795 -0.1243 38 1 4.4544 2.2173 2.8008 39 1 2.7293 1.9557 2.4492 40 1 3.6623 0.7058 3.3068 41 1 5.9431 -0.1114 3.0432 42 1 4.4858 -1.1290 3.1361 43 1 5.3966 -5.4196 -0.6843 44 1 4.8898 -3.1151 4.3420 45 1 5.8739 -3.9879 6.4236 46 1 8.3161 -3.9605 6.7369 47 1 9.7746 -3.0674 4.9655 48 1 8.7911 -2.2034 2.8799 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354570643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:53 Heat of formation + Delta-G solvation = -26.589857 kcal Electronic energy + Delta-G solvation = -25799.862247 eV Core-core repulsion = 22433.160217 eV Total energy + Delta-G solvation = -3366.702029 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.60898 -38.51883 -36.48057 -34.04290 -33.74602 -31.72968 -31.16422 -30.20626 -28.77324 -26.64773 -26.50120 -25.83064 -22.80631 -21.93876 -21.62222 -20.73575 -19.46138 -18.31010 -16.94260 -16.76935 -16.01302 -15.59983 -15.24076 -14.54702 -14.43317 -14.18056 -13.87499 -13.77689 -13.22077 -12.98760 -12.88210 -12.70241 -12.63656 -12.49745 -12.40292 -12.22072 -12.00974 -11.87183 -11.77249 -11.70876 -11.24224 -11.06643 -10.77404 -10.62778 -10.53137 -10.48993 -10.38938 -10.32779 -9.82754 -9.57916 -9.03657 -8.85405 -8.40188 -8.22899 -8.13974 -7.80812 -5.95045 -3.91175 2.08629 2.14610 3.43130 3.46881 3.48385 3.49327 3.53413 4.52387 4.58915 4.79523 5.15967 5.17990 5.26377 5.30350 5.41595 5.47491 5.51378 5.55121 5.56911 5.62129 5.64073 5.66303 5.69048 5.79223 5.87740 5.94162 5.97096 5.99151 6.03979 6.09846 6.17645 6.24148 6.28806 6.33976 6.34452 6.46809 6.62090 6.65282 6.69852 6.83076 7.03471 7.09031 7.13796 7.27041 7.60033 7.73816 7.84996 7.98198 8.56331 9.03167 9.06688 9.69798 11.18192 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.004986 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.033054 B = 5614.033300 C = 6319.055758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.134 3.866 5 H 0.100 0.900 6 C -0.157 4.157 7 N -0.625 5.625 8 C 0.082 3.918 9 C 0.516 3.484 10 O -0.498 6.498 11 C -0.112 4.112 12 C 0.045 3.955 13 H 0.057 0.943 14 C -0.482 4.482 15 H 0.070 0.930 16 C 0.087 3.913 17 N -0.898 5.898 18 Si 0.869 3.131 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.262 1.262 22 C -0.038 4.038 23 C -0.102 4.102 24 C -0.126 4.126 25 C -0.150 4.150 26 C -0.124 4.124 27 C -0.141 4.141 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.261 0.739 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.939 13.648 6.645 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.163 4.163 4 C 0.030 3.970 5 H 0.118 0.882 6 C -0.216 4.216 7 N -0.363 5.363 8 C -0.061 4.061 9 C 0.305 3.695 10 O -0.370 6.370 11 C -0.153 4.153 12 C 0.026 3.974 13 H 0.075 0.925 14 C -0.519 4.519 15 H 0.088 0.912 16 C -0.115 4.115 17 N -0.536 5.536 18 Si 0.698 3.302 19 H -0.203 1.203 20 H -0.219 1.219 21 H -0.187 1.187 22 C -0.039 4.039 23 C -0.120 4.120 24 C -0.144 4.144 25 C -0.168 4.168 26 C -0.142 4.142 27 C -0.159 4.159 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.137 0.863 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.126 0.874 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.777 13.186 5.896 14.709 hybrid contribution 0.904 -0.139 -0.202 0.936 sum -1.874 13.047 5.694 14.358 Atomic orbital electron populations 1.21751 0.96403 1.01504 1.00889 1.21459 0.94957 0.96293 1.03334 1.21948 0.95099 0.97597 1.01652 1.20983 0.93251 0.94026 0.88746 0.88188 1.22111 1.01555 0.96361 1.01536 1.48005 1.52968 1.29337 1.05969 1.21627 1.00034 0.98470 0.85996 1.20815 0.77685 0.78680 0.92350 1.90726 1.55686 1.58375 1.32189 1.21652 1.00687 0.98467 0.94461 1.18323 0.96038 0.92699 0.90356 0.92503 1.20561 0.97600 1.14238 1.19537 0.91159 1.24850 0.97011 0.94743 0.94923 1.69882 1.35156 1.23084 1.25461 0.86980 0.86981 0.78694 0.77534 1.20302 1.21852 1.18670 1.20806 0.92650 0.94848 0.95604 1.20965 1.00119 0.98200 0.92695 1.21060 0.94866 1.00602 0.97881 1.20861 0.93961 1.03028 0.98994 1.20959 0.98777 1.00047 0.94436 1.21082 0.95332 1.02195 0.97301 0.93293 0.93265 0.92786 0.91699 0.91510 0.92089 0.91556 0.92024 0.92753 0.92474 0.93499 0.91752 0.91074 0.91584 0.89978 0.92910 0.86251 0.87174 0.87406 0.87354 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.12 -1.78 5.82 -26.73 -0.16 -1.94 16 3 C -0.12 -1.51 4.64 -26.73 -0.12 -1.63 16 4 C 0.13 1.88 2.64 -67.93 -0.18 1.70 16 5 H 0.10 1.72 6.90 -51.93 -0.36 1.36 16 6 C -0.16 -1.76 9.19 37.16 0.34 -1.42 16 7 N -0.63 -9.55 2.21 -173.93 -0.39 -9.94 16 8 C 0.08 0.93 9.30 59.85 0.56 1.49 16 9 C 0.52 10.29 7.42 -10.98 -0.08 10.21 16 10 O -0.50 -12.37 14.31 5.55 0.08 -12.29 16 11 C -0.11 -2.13 3.52 -27.88 -0.10 -2.23 16 12 C 0.05 1.04 1.21 -92.93 -0.11 0.93 16 13 H 0.06 1.42 4.70 -51.93 -0.24 1.18 16 14 C -0.48 -13.27 6.87 -34.44 -0.24 -13.51 16 15 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 16 C 0.09 2.57 5.47 -17.82 -0.10 2.48 16 17 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 18 Si 0.87 23.00 27.15 -169.99 -4.62 18.38 16 19 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.79 7.11 56.52 0.40 -7.38 16 21 H -0.26 -6.69 6.06 56.52 0.34 -6.35 16 22 C -0.04 -0.81 4.55 -104.63 -0.48 -1.28 16 23 C -0.10 -1.98 8.87 -39.59 -0.35 -2.33 16 24 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 25 C -0.15 -2.45 10.05 -39.58 -0.40 -2.84 16 26 C -0.12 -2.14 10.05 -39.59 -0.40 -2.53 16 27 C -0.14 -2.78 9.43 -39.58 -0.37 -3.15 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.12 7.75 -51.93 -0.40 0.72 16 33 H 0.06 0.65 6.47 -51.93 -0.34 0.32 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.61 6.34 -51.93 -0.33 0.28 16 40 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 41 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 42 H 0.08 1.46 7.10 -51.93 -0.37 1.09 16 43 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 44 H 0.12 2.29 7.80 -52.48 -0.41 1.88 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 47 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 48 H 0.11 2.08 7.95 -52.49 -0.42 1.67 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -33.07 379.81 -8.92 -41.99 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -8.29 Total: 3.56 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -2.21 Total: -20.01 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.39 Total: -37.35 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.62 Total: 18.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.07 -8.92 -41.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354570643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.401 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds