Wall clock time and date at job start Tue Mar 31 2020 09:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47183 * 2 1 4 4 C 1.52997 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47184 * 54.99697 * 4 3 2 6 6 C 1.52998 * 109.47200 * 174.99609 * 4 3 2 7 7 N 1.46500 * 109.47308 * 294.99978 * 4 3 2 8 8 C 1.46500 * 119.99758 * 300.00250 * 7 4 3 9 9 C 1.34777 * 120.00469 * 119.99795 * 7 4 3 10 10 O 1.21285 * 119.99578 * 359.72649 * 9 7 4 11 11 C 1.50703 * 120.00001 * 180.02562 * 9 7 4 12 12 C 1.52997 * 109.46971 * 179.72588 * 11 9 7 13 13 H 1.09001 * 109.47415 * 54.99319 * 12 11 9 14 14 C 1.50698 * 109.46894 * 294.99896 * 12 11 9 15 15 H 1.08000 * 120.00217 * 325.12378 * 14 12 11 16 16 C 1.37878 * 120.00342 * 145.13046 * 14 12 11 17 17 N 1.31511 * 120.00333 * 184.98462 * 16 14 12 18 18 Si 1.86801 * 119.99636 * 4.98271 * 16 14 12 19 19 H 1.48499 * 109.47178 * 84.73618 * 18 16 14 20 20 H 1.48501 * 109.47227 * 204.73339 * 18 16 14 21 21 H 1.48499 * 109.47191 * 324.73376 * 18 16 14 22 22 C 1.50695 * 109.47164 * 174.99955 * 12 11 9 23 23 C 1.38231 * 120.00541 * 64.68860 * 22 12 11 24 24 C 1.38229 * 120.00690 * 179.79152 * 23 22 12 25 25 C 1.38241 * 119.99558 * 0.43684 * 24 23 22 26 26 C 1.38235 * 119.99850 * 359.81797 * 25 24 23 27 27 C 1.38231 * 120.00050 * 359.97433 * 26 25 24 28 28 H 1.09002 * 109.47353 * 300.00436 * 1 2 3 29 29 H 1.09000 * 109.47123 * 59.99894 * 1 2 3 30 30 H 1.09006 * 109.47477 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47353 * 239.99564 * 2 1 3 32 32 H 1.08999 * 109.46871 * 119.99621 * 2 1 3 33 33 H 1.08993 * 109.47208 * 59.99755 * 3 2 1 34 34 H 1.08999 * 109.46907 * 299.99598 * 3 2 1 35 35 H 1.08991 * 109.47132 * 299.99777 * 6 4 3 36 36 H 1.09004 * 109.46980 * 59.99963 * 6 4 3 37 37 H 1.09000 * 109.46995 * 179.97438 * 6 4 3 38 38 H 1.09000 * 109.47120 * 269.99952 * 8 7 4 39 39 H 1.09003 * 109.47495 * 29.99469 * 8 7 4 40 40 H 1.09000 * 109.47520 * 149.99594 * 8 7 4 41 41 H 1.08997 * 109.46817 * 299.72289 * 11 9 7 42 42 H 1.08996 * 109.47482 * 59.72256 * 11 9 7 43 43 H 0.96998 * 119.99721 * 179.97438 * 17 16 14 44 44 H 1.08007 * 119.99554 * 359.97438 * 23 22 12 45 45 H 1.07997 * 120.00611 * 180.27286 * 24 23 22 46 46 H 1.07997 * 120.00071 * 179.83024 * 25 24 23 47 47 H 1.08003 * 119.99588 * 179.97438 * 26 25 24 48 48 H 1.08001 * 119.99944 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0800 2.8795 -0.1252 7 7 4.0578 0.8590 1.2527 8 6 3.7033 1.4738 2.5344 9 6 4.8327 -0.2435 1.2256 10 8 5.1220 -0.7553 0.1648 11 6 5.3340 -0.8440 2.5137 12 6 6.1785 -2.0817 2.2046 13 1 6.9754 -1.8139 1.5108 14 6 5.3067 -3.1422 1.5831 15 1 4.2795 -3.2502 1.8987 16 6 5.8204 -3.9748 0.6115 17 7 5.0352 -4.8341 -0.0005 18 14 7.6318 -3.8821 0.1645 19 1 8.4173 -4.7208 1.1052 20 1 7.8257 -4.3788 -1.2215 21 1 8.0924 -2.4732 0.2544 22 6 6.7804 -2.6107 3.4809 23 6 5.9613 -3.1069 4.4777 24 6 6.5136 -3.5961 5.6466 25 6 7.8846 -3.5808 5.8225 26 6 8.7035 -3.0797 4.8279 27 6 8.1513 -2.5945 3.6572 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.7171 3.3135 -1.0567 36 1 3.7163 3.4691 0.7164 37 1 5.1700 2.8795 -0.1243 38 1 4.4544 2.2173 2.8008 39 1 2.7293 1.9557 2.4492 40 1 3.6623 0.7058 3.3068 41 1 5.9431 -0.1114 3.0432 42 1 4.4858 -1.1290 3.1361 43 1 5.3966 -5.4196 -0.6843 44 1 4.8898 -3.1151 4.3420 45 1 5.8739 -3.9879 6.4236 46 1 8.3161 -3.9605 6.7369 47 1 9.7746 -3.0674 4.9655 48 1 8.7911 -2.2034 2.8799 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354570643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:52 Heat of formation + Delta-G solvation = -44.978816 kcal Electronic energy + Delta-G solvation = -25800.659652 eV Core-core repulsion = 22433.160217 eV Total energy + Delta-G solvation = -3367.499434 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.05628 -39.94677 -37.84227 -35.82453 -34.97447 -33.73162 -32.36597 -31.60932 -30.22501 -27.89751 -27.63750 -27.40855 -24.50344 -23.33861 -22.83360 -21.99466 -20.97535 -19.69608 -19.04307 -18.22077 -17.38122 -16.93616 -16.64409 -16.24851 -15.85957 -15.65208 -15.33178 -14.99220 -14.81603 -14.47343 -14.27445 -14.08905 -13.92055 -13.87313 -13.63625 -13.54082 -13.38621 -13.22500 -12.93356 -12.84135 -12.77020 -12.74476 -12.29143 -12.04341 -11.89925 -11.83491 -11.71460 -11.61791 -11.53101 -11.45652 -11.01697 -10.70108 -10.39072 -9.64159 -9.41691 -9.31251 -8.22993 -6.18280 0.66591 0.72061 1.26638 1.30502 1.36394 1.96391 2.24825 2.37868 3.07236 3.20930 3.69793 4.02050 4.07306 4.09855 4.12116 4.29241 4.30357 4.35861 4.42438 4.43461 4.46657 4.48128 4.59763 4.62449 4.74414 4.77223 4.81922 4.83672 4.85599 4.89253 4.96958 5.00940 5.09518 5.14399 5.20239 5.24127 5.32998 5.35219 5.37397 5.39909 5.47844 5.68700 5.75383 5.81290 5.89460 6.01578 6.32080 6.35267 6.62821 6.79747 7.44414 7.56377 8.94487 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.004986 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.033054 B = 5614.033300 C = 6319.055758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C -0.113 4.113 4 C 0.126 3.874 5 H 0.055 0.945 6 C -0.146 4.146 7 N -0.616 5.616 8 C 0.073 3.927 9 C 0.507 3.493 10 O -0.564 6.564 11 C -0.106 4.106 12 C 0.048 3.952 13 H 0.034 0.966 14 C -0.457 4.457 15 H 0.033 0.967 16 C 0.024 3.976 17 N -0.952 5.952 18 Si 0.920 3.080 19 H -0.265 1.265 20 H -0.299 1.299 21 H -0.253 1.253 22 C -0.063 4.063 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.140 4.140 26 C -0.122 4.122 27 C -0.158 4.158 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.026 0.974 32 H 0.035 0.965 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.257 0.743 44 H 0.109 0.891 45 H 0.141 0.859 46 H 0.148 0.852 47 H 0.141 0.859 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 16.256 9.900 19.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.151 4.151 4 C 0.022 3.978 5 H 0.074 0.926 6 C -0.204 4.204 7 N -0.351 5.351 8 C -0.069 4.069 9 C 0.296 3.704 10 O -0.441 6.441 11 C -0.146 4.146 12 C 0.028 3.972 13 H 0.052 0.948 14 C -0.495 4.495 15 H 0.051 0.949 16 C -0.172 4.172 17 N -0.594 5.594 18 Si 0.747 3.253 19 H -0.190 1.190 20 H -0.226 1.226 21 H -0.178 1.178 22 C -0.064 4.064 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.158 4.158 26 C -0.140 4.140 27 C -0.176 4.176 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.127 0.873 45 H 0.158 0.842 46 H 0.166 0.834 47 H 0.158 0.842 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.196 15.863 9.209 18.473 hybrid contribution 0.650 -0.870 -1.062 1.519 sum -1.547 14.993 8.147 17.133 Atomic orbital electron populations 1.21702 0.94020 1.01384 1.02774 1.21421 0.97052 0.97614 0.99994 1.21896 0.93234 0.95926 1.04024 1.21130 0.94749 0.95123 0.86759 0.92621 1.22021 1.00625 0.94139 1.03654 1.48015 1.51040 1.27854 1.08200 1.21962 1.02222 0.98969 0.83743 1.21063 0.78028 0.79573 0.91687 1.90700 1.58553 1.60764 1.34107 1.21554 1.00882 0.97604 0.94518 1.18162 0.95098 0.92816 0.91085 0.94750 1.20752 0.96448 1.13950 1.18343 0.94900 1.25568 1.00658 0.95227 0.95746 1.70029 1.36851 1.25248 1.27274 0.86160 0.83075 0.79113 0.76936 1.18967 1.22623 1.17793 1.20506 0.93686 0.96898 0.95264 1.20997 0.99639 0.99267 0.93763 1.21409 0.96011 0.99306 0.97324 1.21349 0.93434 1.01038 0.99952 1.21338 1.00696 0.98662 0.93325 1.21203 0.94611 1.03142 0.98679 0.91142 0.91501 0.94036 0.95467 0.94624 0.89253 0.89349 0.90235 0.90103 0.93889 0.91128 0.89040 0.90917 0.88287 0.89022 0.93382 0.87301 0.84154 0.83434 0.84155 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.91 71.98 0.71 -2.58 16 2 C -0.12 -3.70 5.82 30.59 0.18 -3.52 16 3 C -0.11 -2.55 4.64 30.59 0.14 -2.41 16 4 C 0.13 3.52 2.64 44.99 0.12 3.64 16 5 H 0.06 2.07 6.90 -2.39 -0.02 2.05 16 6 C -0.15 -2.95 9.19 71.98 0.66 -2.29 16 7 N -0.62 -18.70 2.21 -822.58 -1.82 -20.52 16 8 C 0.07 1.45 9.30 127.77 1.19 2.64 16 9 C 0.51 21.08 7.42 87.66 0.65 21.73 16 10 O -0.56 -30.13 14.31 -3.04 -0.04 -30.18 16 11 C -0.11 -4.07 3.52 29.85 0.11 -3.96 16 12 C 0.05 2.27 1.21 -12.29 -0.01 2.25 16 13 H 0.03 1.78 4.70 -2.39 -0.01 1.77 16 14 C -0.46 -26.67 6.87 25.60 0.18 -26.50 16 15 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 16 C 0.02 1.51 5.47 84.66 0.46 1.97 16 17 N -0.95 -63.76 13.96 21.45 0.30 -63.46 16 18 Si 0.92 49.64 27.15 68.60 1.86 51.50 16 19 H -0.26 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 21 H -0.25 -13.15 6.06 99.48 0.60 -12.55 16 22 C -0.06 -2.63 4.55 -19.87 -0.09 -2.72 16 23 C -0.12 -4.51 8.87 22.27 0.20 -4.31 16 24 C -0.12 -3.78 10.05 22.27 0.22 -3.55 16 25 C -0.14 -3.92 10.05 22.27 0.22 -3.69 16 26 C -0.12 -3.76 10.05 22.27 0.22 -3.53 16 27 C -0.16 -5.99 9.43 22.27 0.21 -5.78 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.03 1.26 7.75 -2.39 -0.02 1.24 16 33 H 0.09 1.56 6.47 -2.39 -0.02 1.54 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.22 7.67 -2.39 -0.02 1.20 16 37 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.35 6.34 -2.39 -0.02 1.34 16 40 H 0.07 1.45 6.43 -2.39 -0.02 1.43 16 41 H 0.10 3.12 8.11 -2.39 -0.02 3.10 16 42 H 0.09 3.31 7.10 -2.39 -0.02 3.30 16 43 H 0.26 16.46 8.31 -92.71 -0.77 15.69 16 44 H 0.11 4.26 7.80 -2.91 -0.02 4.23 16 45 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 46 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 47 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 48 H 0.11 3.97 7.95 -2.91 -0.02 3.95 16 Total: -1.00 -80.34 379.81 6.47 -73.87 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.80 Total: 21.42 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 5.37 Total: -32.64 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -1.52 Total: -83.98 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.04 Total: -30.18 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.86 Total: 51.50 kcal Total: -80.34 6.47 -73.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354570643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.894 kcal (2) G-P(sol) polarization free energy of solvation -80.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds