Wall clock time and date at job start Tue Mar 31 2020 08:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46961 * 2 1 4 4 C 1.53000 * 109.47486 * 59.99918 * 3 2 1 5 5 C 1.53011 * 109.47083 * 300.00366 * 3 2 1 6 6 N 1.46498 * 109.47447 * 180.02562 * 3 2 1 7 7 C 1.46499 * 119.99381 * 359.97438 * 6 3 2 8 8 C 1.34776 * 120.00231 * 179.97438 * 6 3 2 9 9 O 1.21279 * 119.99707 * 0.02562 * 8 6 3 10 10 C 1.50702 * 119.99692 * 180.27214 * 8 6 3 11 11 C 1.52995 * 109.46828 * 179.72573 * 10 8 6 12 12 H 1.09003 * 109.47418 * 304.99846 * 11 10 8 13 13 C 1.50696 * 109.47173 * 65.00132 * 11 10 8 14 14 H 1.07999 * 120.00108 * 234.67591 * 13 11 10 15 15 C 1.37877 * 119.99887 * 54.68187 * 13 11 10 16 16 N 1.31510 * 120.00333 * 4.86473 * 15 13 11 17 17 Si 1.86805 * 119.99822 * 184.86976 * 15 13 11 18 18 H 1.48502 * 109.46988 * 89.99496 * 17 15 13 19 19 H 1.48500 * 109.47011 * 209.99714 * 17 15 13 20 20 H 1.48497 * 109.47162 * 330.00001 * 17 15 13 21 21 C 1.50702 * 109.47088 * 185.00271 * 11 10 8 22 22 C 1.38238 * 120.00206 * 151.48420 * 21 11 10 23 23 C 1.38234 * 120.00102 * 179.78738 * 22 21 11 24 24 C 1.38234 * 119.99735 * 0.44057 * 23 22 21 25 25 C 1.38236 * 120.00405 * 359.81283 * 24 23 22 26 26 C 1.38233 * 119.99814 * 331.75953 * 21 11 10 27 27 H 1.08997 * 109.46851 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46612 * 299.99480 * 1 2 3 29 29 H 1.08995 * 109.47104 * 59.99967 * 1 2 3 30 30 H 1.08994 * 109.46717 * 240.00164 * 2 1 3 31 31 H 1.08995 * 109.47104 * 120.00033 * 2 1 3 32 32 H 1.08995 * 109.47641 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.47164 * 300.00794 * 4 3 2 34 34 H 1.09008 * 109.46657 * 59.99568 * 4 3 2 35 35 H 1.09001 * 109.46658 * 299.99811 * 5 3 2 36 36 H 1.08992 * 109.46871 * 59.99839 * 5 3 2 37 37 H 1.09001 * 109.46782 * 180.02562 * 5 3 2 38 38 H 1.09002 * 109.47032 * 269.99715 * 7 6 3 39 39 H 1.08997 * 109.47585 * 30.00018 * 7 6 3 40 40 H 1.09005 * 109.46920 * 150.00472 * 7 6 3 41 41 H 1.08994 * 109.47448 * 299.72663 * 10 8 6 42 42 H 1.09002 * 109.46800 * 59.72409 * 10 8 6 43 43 H 0.96993 * 120.00386 * 180.02562 * 16 15 13 44 44 H 1.08005 * 119.99666 * 0.02562 * 22 21 11 45 45 H 1.08000 * 119.99950 * 180.27835 * 23 22 21 46 46 H 1.08005 * 120.00047 * 179.83278 * 24 23 22 47 47 H 1.07997 * 120.00478 * 179.97438 * 25 24 23 48 48 H 1.07995 * 120.00507 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5299 2.1638 -1.2493 6 7 3.5050 1.4426 -0.0006 7 6 4.2375 0.1739 -0.0005 8 6 4.1788 2.6099 -0.0012 9 8 3.5723 3.6601 -0.0008 10 6 5.6858 2.6099 -0.0081 11 6 6.1957 4.0523 -0.0143 12 1 5.7573 4.5891 -0.8556 13 6 5.8029 4.7295 1.2733 14 1 5.2496 5.6567 1.2489 15 6 6.1500 4.1655 2.4826 16 7 6.9049 3.0891 2.5137 17 14 5.5477 4.9302 4.0770 18 1 4.2431 4.3284 4.4528 19 1 6.5386 4.6757 5.1533 20 1 5.3824 6.3944 3.8923 21 6 7.6971 4.0539 -0.1450 22 6 8.3375 5.1212 -0.7464 23 6 9.7149 5.1246 -0.8624 24 6 10.4513 4.0565 -0.3851 25 6 9.8106 2.9867 0.2116 26 6 8.4334 2.9853 0.3314 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8929 3.1916 1.2490 33 1 0.4400 2.1637 1.2493 34 1 1.8934 1.6499 2.1392 35 1 1.8932 1.6500 -2.1393 36 1 0.4400 2.1637 -1.2492 37 1 1.8936 3.1914 -1.2495 38 1 4.4196 -0.1404 1.0272 39 1 3.6482 -0.5859 -0.5139 40 1 5.1897 0.3041 -0.5148 41 1 6.0532 2.0985 0.8816 42 1 6.0451 2.0936 -0.8983 43 1 7.1487 2.6921 3.3644 44 1 7.7618 5.9542 -1.1222 45 1 10.2156 5.9605 -1.3282 46 1 11.5273 4.0579 -0.4781 47 1 10.3858 2.1521 0.5841 48 1 7.9328 2.1496 0.7976 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356174989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:16 Heat of formation + Delta-G solvation = -10.200966 kcal Electronic energy + Delta-G solvation = -26352.836225 eV Core-core repulsion = 22986.844872 eV Total energy + Delta-G solvation = -3365.991354 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.76088 -38.23528 -36.60652 -34.14892 -33.34104 -31.03874 -30.03794 -29.76630 -28.25853 -26.95889 -26.24903 -25.49339 -24.14277 -22.55520 -21.41558 -20.17069 -19.07139 -17.62378 -16.47829 -16.06369 -15.86823 -15.35807 -15.14817 -14.80069 -14.33495 -13.87504 -13.76407 -13.48284 -13.13198 -12.89259 -12.62118 -12.58403 -12.31578 -12.18058 -12.12405 -11.64732 -11.59887 -11.48788 -11.35440 -11.30525 -11.19887 -10.97653 -10.86602 -10.78750 -10.59905 -10.38890 -10.30908 -10.12710 -9.90727 -9.25530 -9.10905 -8.57583 -8.28001 -7.94260 -7.78089 -7.41184 -5.94196 -4.03300 2.52070 2.60843 3.32997 3.38581 3.44170 3.62451 3.77196 4.46082 4.83481 5.00059 5.00300 5.23341 5.28642 5.41920 5.47577 5.53441 5.58575 5.82316 5.83354 5.86782 5.91394 5.94988 5.98106 6.01065 6.04367 6.07365 6.09562 6.17427 6.28226 6.32525 6.41492 6.47664 6.62745 6.68729 6.75674 6.80379 6.82043 7.16586 7.18147 7.27958 7.33918 7.51133 7.57926 7.71962 7.96643 8.10480 8.20944 8.26100 8.39066 8.93111 9.29062 9.59531 10.99992 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.005085 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.425256 B = 5505.266887 C = 6352.549430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.177 3.823 4 C -0.163 4.163 5 C -0.161 4.161 6 N -0.626 5.626 7 C 0.080 3.920 8 C 0.528 3.472 9 O -0.522 6.522 10 C -0.136 4.136 11 C 0.088 3.912 12 H 0.036 0.964 13 C -0.467 4.467 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.889 3.111 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.026 4.026 22 C -0.133 4.133 23 C -0.142 4.142 24 C -0.155 4.155 25 C -0.143 4.143 26 C -0.068 4.068 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.132 0.868 42 H 0.049 0.951 43 H 0.259 0.741 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.143 -8.412 -5.630 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C 0.093 3.907 4 C -0.221 4.221 5 C -0.219 4.219 6 N -0.363 5.363 7 C -0.063 4.063 8 C 0.319 3.681 9 O -0.396 6.396 10 C -0.176 4.176 11 C 0.068 3.932 12 H 0.054 0.946 13 C -0.504 4.504 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.718 3.282 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.200 1.200 21 C -0.027 4.027 22 C -0.151 4.151 23 C -0.160 4.160 24 C -0.173 4.173 25 C -0.162 4.162 26 C -0.087 4.087 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.149 0.851 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.119 0.881 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.389 -7.930 -5.477 11.042 hybrid contribution -0.084 0.278 1.252 1.285 sum -5.474 -7.651 -4.225 10.313 Atomic orbital electron populations 1.21873 0.95319 1.01386 1.02388 1.21846 0.96279 0.95980 1.02042 1.20199 0.80380 0.94495 0.95672 1.22252 0.99941 1.03384 0.96503 1.22250 1.00245 1.03030 0.96401 1.48167 1.04980 1.06624 1.76565 1.21718 0.97000 0.86269 1.01363 1.21046 0.91017 0.82061 0.73999 1.90530 1.70141 1.30997 1.47975 1.21960 0.89627 1.02765 1.03292 1.17642 0.87012 0.91561 0.96937 0.94567 1.20956 1.31942 1.08168 0.89350 0.92356 1.24862 0.94769 0.95440 0.98814 1.69672 1.36305 1.21634 1.25314 0.86609 0.78360 0.79847 0.83364 1.20894 1.21500 1.20049 1.20354 0.98018 0.92182 0.92105 1.20903 0.93858 0.98655 1.01655 1.20794 0.94335 0.98161 1.02702 1.20759 0.98139 0.95635 1.02758 1.21046 0.95601 0.98154 1.01363 1.21353 0.92345 0.99884 0.95075 0.92896 0.92220 0.92276 0.91571 0.91562 0.89845 0.92604 0.93218 0.93360 0.92427 0.90113 0.93326 0.91798 0.91062 0.85110 0.93231 0.93036 0.87700 0.88132 0.88338 0.88126 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.21 37.16 0.34 -1.16 16 2 C -0.12 -1.44 3.75 -26.73 -0.10 -1.54 16 3 C 0.18 2.67 0.82 -131.81 -0.11 2.57 16 4 C -0.16 -2.68 8.05 37.16 0.30 -2.38 16 5 C -0.16 -2.39 8.05 37.16 0.30 -2.09 16 6 N -0.63 -10.73 2.82 -166.59 -0.47 -11.20 16 7 C 0.08 1.10 9.40 59.85 0.56 1.67 16 8 C 0.53 11.18 6.84 -10.99 -0.08 11.11 16 9 O -0.52 -12.50 11.19 5.56 0.06 -12.44 16 10 C -0.14 -2.94 2.63 -27.88 -0.07 -3.01 16 11 C 0.09 2.11 1.97 -92.93 -0.18 1.93 16 12 H 0.04 0.89 7.91 -51.93 -0.41 0.48 16 13 C -0.47 -12.52 7.27 -34.44 -0.25 -12.77 16 14 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 15 C 0.06 1.60 5.12 -17.82 -0.09 1.51 16 16 N -0.89 -22.75 7.99 55.43 0.44 -22.31 16 17 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.03 -0.60 4.69 -104.62 -0.49 -1.09 16 22 C -0.13 -2.86 9.71 -39.58 -0.38 -3.24 16 23 C -0.14 -2.75 10.05 -39.58 -0.40 -3.15 16 24 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 25 C -0.14 -2.86 10.05 -39.58 -0.40 -3.26 16 26 C -0.07 -1.50 7.45 -39.58 -0.30 -1.79 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 29 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 30 H 0.07 0.71 6.88 -51.93 -0.36 0.35 16 31 H 0.07 0.77 7.78 -51.93 -0.40 0.36 16 32 H 0.08 1.68 6.17 -51.93 -0.32 1.36 16 33 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 34 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.73 6.43 -51.93 -0.33 0.39 16 37 H 0.08 1.45 6.17 -51.93 -0.32 1.13 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.70 5.76 -51.93 -0.30 0.40 16 40 H 0.07 0.96 6.43 -51.93 -0.33 0.63 16 41 H 0.13 2.99 4.67 -51.93 -0.24 2.75 16 42 H 0.05 0.96 7.40 -51.93 -0.38 0.58 16 43 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 44 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 45 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 46 H 0.10 1.59 8.06 -52.48 -0.42 1.16 16 47 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 48 H 0.14 3.12 5.18 -52.49 -0.27 2.85 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -28.47 358.94 -8.92 -37.39 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.61 Total: 6.53 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -1.74 Total: -20.03 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: -0.03 Total: -33.51 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.06 Total: -12.44 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.47 -8.92 -37.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356174989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.191 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds