Wall clock time and date at job start Tue Mar 31 2020 08:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46961 * 2 1 4 4 C 1.53000 * 109.47486 * 59.99918 * 3 2 1 5 5 C 1.53011 * 109.47083 * 300.00366 * 3 2 1 6 6 N 1.46498 * 109.47447 * 180.02562 * 3 2 1 7 7 C 1.46499 * 119.99381 * 359.97438 * 6 3 2 8 8 C 1.34776 * 120.00231 * 179.97438 * 6 3 2 9 9 O 1.21279 * 119.99707 * 0.02562 * 8 6 3 10 10 C 1.50702 * 119.99692 * 180.27214 * 8 6 3 11 11 C 1.52995 * 109.46828 * 179.72573 * 10 8 6 12 12 H 1.09003 * 109.47418 * 304.99846 * 11 10 8 13 13 C 1.50696 * 109.47173 * 65.00132 * 11 10 8 14 14 H 1.07999 * 120.00108 * 234.67591 * 13 11 10 15 15 C 1.37877 * 119.99887 * 54.68187 * 13 11 10 16 16 N 1.31510 * 120.00333 * 4.86473 * 15 13 11 17 17 Si 1.86805 * 119.99822 * 184.86976 * 15 13 11 18 18 H 1.48502 * 109.46988 * 89.99496 * 17 15 13 19 19 H 1.48500 * 109.47011 * 209.99714 * 17 15 13 20 20 H 1.48497 * 109.47162 * 330.00001 * 17 15 13 21 21 C 1.50702 * 109.47088 * 185.00271 * 11 10 8 22 22 C 1.38238 * 120.00206 * 151.48420 * 21 11 10 23 23 C 1.38234 * 120.00102 * 179.78738 * 22 21 11 24 24 C 1.38234 * 119.99735 * 0.44057 * 23 22 21 25 25 C 1.38236 * 120.00405 * 359.81283 * 24 23 22 26 26 C 1.38233 * 119.99814 * 331.75953 * 21 11 10 27 27 H 1.08997 * 109.46851 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46612 * 299.99480 * 1 2 3 29 29 H 1.08995 * 109.47104 * 59.99967 * 1 2 3 30 30 H 1.08994 * 109.46717 * 240.00164 * 2 1 3 31 31 H 1.08995 * 109.47104 * 120.00033 * 2 1 3 32 32 H 1.08995 * 109.47641 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.47164 * 300.00794 * 4 3 2 34 34 H 1.09008 * 109.46657 * 59.99568 * 4 3 2 35 35 H 1.09001 * 109.46658 * 299.99811 * 5 3 2 36 36 H 1.08992 * 109.46871 * 59.99839 * 5 3 2 37 37 H 1.09001 * 109.46782 * 180.02562 * 5 3 2 38 38 H 1.09002 * 109.47032 * 269.99715 * 7 6 3 39 39 H 1.08997 * 109.47585 * 30.00018 * 7 6 3 40 40 H 1.09005 * 109.46920 * 150.00472 * 7 6 3 41 41 H 1.08994 * 109.47448 * 299.72663 * 10 8 6 42 42 H 1.09002 * 109.46800 * 59.72409 * 10 8 6 43 43 H 0.96993 * 120.00386 * 180.02562 * 16 15 13 44 44 H 1.08005 * 119.99666 * 0.02562 * 22 21 11 45 45 H 1.08000 * 119.99950 * 180.27835 * 23 22 21 46 46 H 1.08005 * 120.00047 * 179.83278 * 24 23 22 47 47 H 1.07997 * 120.00478 * 179.97438 * 25 24 23 48 48 H 1.07995 * 120.00507 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5299 2.1638 -1.2493 6 7 3.5050 1.4426 -0.0006 7 6 4.2375 0.1739 -0.0005 8 6 4.1788 2.6099 -0.0012 9 8 3.5723 3.6601 -0.0008 10 6 5.6858 2.6099 -0.0081 11 6 6.1957 4.0523 -0.0143 12 1 5.7573 4.5891 -0.8556 13 6 5.8029 4.7295 1.2733 14 1 5.2496 5.6567 1.2489 15 6 6.1500 4.1655 2.4826 16 7 6.9049 3.0891 2.5137 17 14 5.5477 4.9302 4.0770 18 1 4.2431 4.3284 4.4528 19 1 6.5386 4.6757 5.1533 20 1 5.3824 6.3944 3.8923 21 6 7.6971 4.0539 -0.1450 22 6 8.3375 5.1212 -0.7464 23 6 9.7149 5.1246 -0.8624 24 6 10.4513 4.0565 -0.3851 25 6 9.8106 2.9867 0.2116 26 6 8.4334 2.9853 0.3314 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8929 3.1916 1.2490 33 1 0.4400 2.1637 1.2493 34 1 1.8934 1.6499 2.1392 35 1 1.8932 1.6500 -2.1393 36 1 0.4400 2.1637 -1.2492 37 1 1.8936 3.1914 -1.2495 38 1 4.4196 -0.1404 1.0272 39 1 3.6482 -0.5859 -0.5139 40 1 5.1897 0.3041 -0.5148 41 1 6.0532 2.0985 0.8816 42 1 6.0451 2.0936 -0.8983 43 1 7.1487 2.6921 3.3644 44 1 7.7618 5.9542 -1.1222 45 1 10.2156 5.9605 -1.3282 46 1 11.5273 4.0579 -0.4781 47 1 10.3858 2.1521 0.5841 48 1 7.9328 2.1496 0.7976 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356174989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:14 Heat of formation + Delta-G solvation = -23.327993 kcal Electronic energy + Delta-G solvation = -26353.405456 eV Core-core repulsion = 22986.844872 eV Total energy + Delta-G solvation = -3366.560584 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 15.05 seconds Orbital eigenvalues (eV) -41.22206 -39.83605 -38.04252 -35.96526 -34.66242 -32.91482 -31.42160 -31.06862 -29.88090 -28.23498 -27.91741 -26.93728 -25.31479 -24.22040 -23.00653 -21.69786 -20.60055 -19.05758 -18.21899 -17.68091 -17.26903 -16.93276 -16.82141 -16.28235 -15.63102 -15.48003 -15.34269 -14.84573 -14.76594 -14.33188 -13.99551 -13.78564 -13.73647 -13.57635 -13.43744 -13.29250 -13.16320 -12.88396 -12.83487 -12.78349 -12.65587 -12.57979 -12.40730 -12.23209 -12.08132 -11.85529 -11.67712 -11.56713 -11.48786 -11.05283 -11.00168 -10.50519 -9.98525 -9.39902 -9.34547 -9.11077 -7.94044 -6.08992 0.89224 1.00717 1.33442 1.36151 1.44239 2.11481 2.31283 2.44008 3.20242 3.38128 3.73787 3.98963 4.15996 4.22665 4.34311 4.37636 4.42397 4.45702 4.51337 4.53559 4.64996 4.69654 4.76306 4.79437 4.80324 4.87438 4.91460 4.99194 5.01083 5.04495 5.09657 5.14612 5.14977 5.15653 5.25168 5.38847 5.50909 5.54603 5.56265 5.65130 5.68273 5.91087 5.95098 6.01306 6.10241 6.37597 6.43449 6.58650 6.75324 6.85225 7.52517 7.69825 8.95072 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.005085 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.425256 B = 5505.266887 C = 6352.549430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.169 3.831 4 C -0.158 4.158 5 C -0.155 4.155 6 N -0.623 5.623 7 C 0.073 3.927 8 C 0.518 3.482 9 O -0.561 6.561 10 C -0.124 4.124 11 C 0.089 3.911 12 H 0.011 0.989 13 C -0.486 4.486 14 H 0.025 0.975 15 C 0.036 3.964 16 N -0.884 5.884 17 Si 0.925 3.075 18 H -0.287 1.287 19 H -0.278 1.278 20 H -0.285 1.285 21 C -0.050 4.050 22 C -0.153 4.153 23 C -0.140 4.140 24 C -0.149 4.149 25 C -0.146 4.146 26 C -0.080 4.080 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.121 0.879 42 H 0.067 0.933 43 H 0.260 0.740 44 H 0.101 0.899 45 H 0.132 0.868 46 H 0.136 0.864 47 H 0.127 0.873 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.331 -10.769 -6.034 13.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C 0.085 3.915 4 C -0.216 4.216 5 C -0.213 4.213 6 N -0.358 5.358 7 C -0.069 4.069 8 C 0.309 3.691 9 O -0.439 6.439 10 C -0.164 4.164 11 C 0.070 3.930 12 H 0.030 0.970 13 C -0.524 4.524 14 H 0.043 0.957 15 C -0.163 4.163 16 N -0.523 5.523 17 Si 0.754 3.246 18 H -0.214 1.214 19 H -0.203 1.203 20 H -0.211 1.211 21 C -0.051 4.051 22 C -0.172 4.172 23 C -0.158 4.158 24 C -0.167 4.167 25 C -0.164 4.164 26 C -0.099 4.099 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.118 0.882 40 H 0.090 0.910 41 H 0.138 0.862 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.119 0.881 45 H 0.150 0.850 46 H 0.154 0.846 47 H 0.145 0.855 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.571 -10.336 -5.881 12.740 hybrid contribution -0.317 1.022 1.334 1.711 sum -4.888 -9.314 -4.547 11.459 Atomic orbital electron populations 1.21870 0.93715 1.02807 1.02368 1.21809 0.97559 0.92916 1.03016 1.20457 0.79083 0.97041 0.94906 1.22190 1.01605 1.00698 0.97115 1.22168 1.01704 1.00686 0.96714 1.48203 1.06209 1.06544 1.74809 1.21962 0.97497 0.85414 1.02013 1.21061 0.91043 0.82848 0.74170 1.90524 1.70703 1.32757 1.49883 1.21754 0.90243 1.00990 1.03444 1.17525 0.88330 0.92543 0.94612 0.97039 1.20892 1.32607 1.07569 0.91296 0.95673 1.25179 0.95117 0.96070 0.99943 1.69756 1.35795 1.21268 1.25451 0.86067 0.78006 0.78707 0.81835 1.21365 1.20291 1.21079 1.20311 0.97193 0.93567 0.93996 1.21079 0.95340 0.98396 1.02346 1.21151 0.93319 0.99359 1.01946 1.21197 1.00054 0.94503 1.00902 1.21369 0.94809 0.99403 1.00859 1.21301 0.93512 0.99347 0.95693 0.90792 0.92685 0.91861 0.89878 0.91217 0.94296 0.89939 0.94015 0.92331 0.90028 0.94029 0.93243 0.88198 0.90967 0.86154 0.91458 0.92953 0.88074 0.85040 0.84576 0.85519 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.21 71.98 0.66 -1.81 16 2 C -0.12 -2.34 3.75 30.60 0.11 -2.22 16 3 C 0.17 4.98 0.82 3.61 0.00 4.98 16 4 C -0.16 -5.28 8.05 71.98 0.58 -4.71 16 5 C -0.15 -4.53 8.05 71.99 0.58 -3.95 16 6 N -0.62 -21.29 2.82 -799.36 -2.26 -23.54 16 7 C 0.07 1.90 9.40 127.77 1.20 3.10 16 8 C 0.52 22.88 6.84 87.66 0.60 23.48 16 9 O -0.56 -28.78 11.19 -3.03 -0.03 -28.81 16 10 C -0.12 -5.54 2.63 29.85 0.08 -5.46 16 11 C 0.09 4.52 1.97 -12.29 -0.02 4.49 16 12 H 0.01 0.60 7.91 -2.39 -0.02 0.58 16 13 C -0.49 -27.53 7.27 25.60 0.19 -27.35 16 14 H 0.02 1.54 7.82 -2.91 -0.02 1.51 16 15 C 0.04 1.97 5.12 84.66 0.43 2.40 16 16 N -0.88 -45.65 7.99 21.45 0.17 -45.48 16 17 Si 0.93 45.43 29.54 68.60 2.03 47.46 16 18 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 21 C -0.05 -2.35 4.69 -19.87 -0.09 -2.45 16 22 C -0.15 -6.67 9.71 22.27 0.22 -6.45 16 23 C -0.14 -5.13 10.05 22.27 0.22 -4.91 16 24 C -0.15 -5.14 10.05 22.27 0.22 -4.91 16 25 C -0.15 -5.49 10.05 22.27 0.22 -5.27 16 26 C -0.08 -3.49 7.45 22.27 0.17 -3.33 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 0.96 6.43 -2.39 -0.02 0.94 16 29 H 0.06 1.00 6.43 -2.39 -0.02 0.98 16 30 H 0.08 1.44 6.88 -2.39 -0.02 1.42 16 31 H 0.07 1.40 7.78 -2.39 -0.02 1.38 16 32 H 0.04 1.65 6.17 -2.39 -0.01 1.63 16 33 H 0.08 2.23 6.43 -2.39 -0.02 2.22 16 34 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.94 6.43 -2.39 -0.02 1.92 16 37 H 0.04 1.56 6.17 -2.39 -0.01 1.54 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.10 1.87 5.76 -2.39 -0.01 1.85 16 40 H 0.07 1.86 6.43 -2.38 -0.02 1.85 16 41 H 0.12 5.64 4.67 -2.39 -0.01 5.63 16 42 H 0.07 2.67 7.40 -2.39 -0.02 2.65 16 43 H 0.26 13.05 8.31 -92.71 -0.77 12.27 16 44 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 45 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 46 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 47 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 48 H 0.13 5.81 5.18 -2.91 -0.02 5.79 16 Total: -1.00 -65.20 358.94 6.22 -58.98 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.94 Total: 25.74 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 5.38 Total: -34.34 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -2.09 Total: -69.02 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.03 Total: -28.81 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -65.20 6.22 -58.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356174989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.648 kcal (2) G-P(sol) polarization free energy of solvation -65.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.05 seconds