Wall clock time and date at job start Tue Mar 31 2020 08:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47419 * 2 1 4 4 C 1.52999 * 109.47419 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46791 * 55.00074 * 4 3 2 6 6 C 1.53000 * 109.46855 * 174.99996 * 4 3 2 7 7 C 1.50705 * 109.46710 * 184.99724 * 6 4 3 8 8 C 1.38234 * 120.00349 * 269.72795 * 7 6 4 9 9 C 1.38237 * 120.00149 * 179.76447 * 8 7 6 10 10 C 1.38232 * 119.99827 * 0.51273 * 9 8 7 11 11 C 1.38238 * 119.99886 * 359.73857 * 10 9 8 12 12 C 1.38232 * 119.99829 * 90.00042 * 7 6 4 13 13 N 1.46504 * 109.46896 * 294.99955 * 4 3 2 14 14 C 1.46498 * 119.99952 * 300.00112 * 13 4 3 15 15 C 1.53001 * 109.47310 * 90.00069 * 14 13 4 16 16 C 1.52999 * 109.46768 * 179.97438 * 15 14 13 17 17 C 1.34776 * 119.99803 * 119.99952 * 13 4 3 18 18 O 1.21686 * 119.99923 * 0.02562 * 17 13 4 19 19 C 1.46379 * 119.99740 * 179.97438 * 17 13 4 20 20 H 1.07997 * 119.99639 * 355.03403 * 19 17 13 21 21 C 1.40048 * 119.99576 * 175.03191 * 19 17 13 22 22 N 1.30670 * 120.00388 * 6.22489 * 21 19 17 23 23 Si 1.86799 * 119.99698 * 186.22058 * 21 19 17 24 24 H 1.48501 * 109.47203 * 94.98464 * 23 21 19 25 25 H 1.48506 * 109.46985 * 214.98389 * 23 21 19 26 26 H 1.48501 * 109.47205 * 334.98037 * 23 21 19 27 27 H 1.09001 * 109.46964 * 300.00393 * 1 2 3 28 28 H 1.09001 * 109.47114 * 60.00036 * 1 2 3 29 29 H 1.08995 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46964 * 239.99607 * 2 1 3 31 31 H 1.09001 * 109.47114 * 119.99964 * 2 1 3 32 32 H 1.09006 * 109.46940 * 59.99268 * 3 2 1 33 33 H 1.09001 * 109.46948 * 300.00065 * 3 2 1 34 34 H 1.08997 * 109.47275 * 304.99487 * 6 4 3 35 35 H 1.09001 * 109.47455 * 65.00514 * 6 4 3 36 36 H 1.08008 * 119.99851 * 0.02562 * 8 7 6 37 37 H 1.08000 * 119.99817 * 180.22867 * 9 8 7 38 38 H 1.07995 * 120.00066 * 179.72687 * 10 9 8 39 39 H 1.08001 * 119.99836 * 179.97438 * 11 10 9 40 40 H 1.08000 * 120.00108 * 359.97438 * 12 7 6 41 41 H 1.09002 * 109.47298 * 329.99801 * 14 13 4 42 42 H 1.09005 * 109.46970 * 210.00233 * 14 13 4 43 43 H 1.08999 * 109.46906 * 299.99379 * 15 14 13 44 44 H 1.08992 * 109.46902 * 60.00129 * 15 14 13 45 45 H 1.09002 * 109.47520 * 59.99928 * 16 15 14 46 46 H 1.09002 * 109.46730 * 180.02562 * 16 15 14 47 47 H 1.08996 * 109.47651 * 299.99587 * 16 15 14 48 48 H 0.96998 * 119.99925 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0800 2.8795 -0.1251 7 6 5.5820 2.8704 -0.2479 8 6 6.3688 2.9414 0.8865 9 6 7.7465 2.9282 0.7741 10 6 8.3375 2.8547 -0.4734 11 6 7.5507 2.7889 -1.6081 12 6 6.1730 2.7968 -1.4953 13 7 4.0578 0.8589 1.2528 14 6 3.7033 1.4737 2.5344 15 6 2.4020 0.8580 3.0528 16 6 2.0323 1.4997 4.3916 17 6 4.8326 -0.2435 1.2256 18 8 5.1274 -0.7539 0.1610 19 6 5.3204 -0.8263 2.4767 20 1 5.1272 -0.3287 3.4155 21 6 6.0377 -2.0290 2.4560 22 7 6.3768 -2.5680 1.3150 23 14 6.5096 -2.8626 4.0597 24 1 5.4909 -3.8868 4.4037 25 1 7.8352 -3.5145 3.9073 26 1 6.5780 -1.8491 5.1430 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.6459 3.3429 -1.0109 35 1 3.7914 3.4462 0.7601 36 1 5.9070 3.0030 1.8609 37 1 8.3611 2.9800 1.6607 38 1 9.4138 2.8488 -0.5615 39 1 8.0125 2.7318 -2.5828 40 1 5.5584 2.7453 -2.3819 41 1 3.5685 2.5466 2.3978 42 1 4.5015 1.2967 3.2554 43 1 1.6039 1.0351 2.3319 44 1 2.5369 -0.2148 3.1895 45 1 1.8976 2.5728 4.2554 46 1 1.1055 1.0608 4.7611 47 1 2.8304 1.3224 5.1124 48 1 6.8733 -3.4012 1.3008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356195175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:57 Heat of formation + Delta-G solvation = -35.485504 kcal Electronic energy + Delta-G solvation = -26615.307215 eV Core-core repulsion = 23248.219441 eV Total energy + Delta-G solvation = -3367.087773 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.27586 -37.98076 -35.46279 -33.91525 -33.09108 -32.37790 -31.08175 -30.33753 -29.08438 -26.04560 -25.86156 -25.31330 -22.15313 -22.07344 -21.02550 -20.60678 -20.37453 -18.52905 -16.68563 -16.24710 -15.90818 -15.01997 -14.75063 -14.58848 -14.18840 -14.02791 -14.01973 -13.69555 -13.20929 -12.99165 -12.79936 -12.53529 -12.47120 -12.15662 -11.90842 -11.80837 -11.63653 -11.44725 -11.37321 -11.11334 -11.00858 -10.87448 -10.80868 -10.63930 -10.48313 -10.34492 -10.15503 -10.12197 -10.04479 -9.90149 -9.72107 -8.78573 -8.34814 -8.12795 -7.45000 -7.07833 -6.12616 -4.54868 1.92705 1.97587 3.14969 3.22932 3.25167 4.12441 4.32504 4.57655 4.64935 5.16770 5.31945 5.36451 5.46537 5.48313 5.53407 5.54891 5.57193 5.61982 5.72415 5.82001 5.87054 5.90643 5.92275 5.98284 6.02471 6.12035 6.14528 6.18483 6.20792 6.28832 6.32509 6.41010 6.43975 6.51517 6.56207 6.61122 6.69874 6.74406 6.86460 6.89287 6.98517 7.03669 7.05556 7.20351 7.51854 7.56886 7.78535 8.24775 8.47196 9.10555 9.55620 10.66585 10.87991 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.008760 B = 0.007763 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.405375 B = 3606.082225 C = 5289.521570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.126 4.126 4 C 0.152 3.848 5 H 0.093 0.907 6 C -0.092 4.092 7 C -0.061 4.061 8 C -0.096 4.096 9 C -0.116 4.116 10 C -0.130 4.130 11 C -0.122 4.122 12 C -0.117 4.117 13 N -0.628 5.628 14 C 0.130 3.870 15 C -0.150 4.150 16 C -0.147 4.147 17 C 0.566 3.434 18 O -0.575 6.575 19 C -0.541 4.541 20 H 0.069 0.931 21 C 0.090 3.910 22 N -0.766 5.766 23 Si 0.897 3.103 24 H -0.274 1.274 25 H -0.281 1.281 26 H -0.265 1.265 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.047 0.953 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.052 0.948 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.384 10.906 0.261 12.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.165 4.165 4 C 0.046 3.954 5 H 0.111 0.889 6 C -0.130 4.130 7 C -0.061 4.061 8 C -0.114 4.114 9 C -0.134 4.134 10 C -0.148 4.148 11 C -0.140 4.140 12 C -0.135 4.135 13 N -0.364 5.364 14 C 0.005 3.995 15 C -0.189 4.189 16 C -0.205 4.205 17 C 0.372 3.628 18 O -0.457 6.457 19 C -0.578 4.578 20 H 0.087 0.913 21 C -0.129 4.129 22 N -0.395 5.395 23 Si 0.722 3.278 24 H -0.199 1.199 25 H -0.206 1.206 26 H -0.189 1.189 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.100 10.456 -0.444 11.642 hybrid contribution 0.250 -0.594 0.969 1.164 sum -4.850 9.862 0.526 11.003 Atomic orbital electron populations 1.21769 0.96978 1.00926 1.00801 1.21475 0.94132 0.96976 1.03319 1.22053 0.96356 0.97079 1.00971 1.20645 0.91619 0.91844 0.91266 0.88893 1.21047 0.91620 0.98682 1.01661 1.19689 0.95370 0.98007 0.93035 1.20920 0.93411 0.99076 0.97953 1.21032 0.95043 1.00240 0.97115 1.20974 0.99160 1.01723 0.92930 1.20963 0.93933 1.01021 0.98070 1.20896 0.94695 1.01025 0.96867 1.47935 1.54910 1.30831 1.02725 1.21157 0.96077 0.94939 0.87302 1.22238 0.98868 1.01754 0.96051 1.21711 1.00738 0.99921 0.98130 1.18088 0.76814 0.77545 0.90355 1.90591 1.60699 1.61747 1.32672 1.20965 1.36558 1.07626 0.92632 0.91267 1.25671 0.93965 0.96933 0.96368 1.70030 1.28116 1.15764 1.25609 0.86528 0.78219 0.79873 0.83168 1.19947 1.20618 1.18947 0.93282 0.93504 0.93312 0.92377 0.90736 0.91875 0.92668 0.91385 0.91410 0.86625 0.86779 0.86987 0.86926 0.86894 0.93515 0.90688 0.91733 0.91118 0.93519 0.93497 0.92913 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -2.03 5.17 -26.73 -0.14 -2.17 16 3 C -0.13 -1.93 4.16 -26.73 -0.11 -2.05 16 4 C 0.15 2.79 2.02 -67.93 -0.14 2.65 16 5 H 0.09 2.07 6.90 -51.93 -0.36 1.71 16 6 C -0.09 -1.44 4.78 -27.88 -0.13 -1.57 16 7 C -0.06 -1.08 4.95 -104.62 -0.52 -1.60 16 8 C -0.10 -1.73 9.32 -39.58 -0.37 -2.10 16 9 C -0.12 -2.03 10.05 -39.58 -0.40 -2.43 16 10 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 11 C -0.12 -2.03 10.05 -39.58 -0.40 -2.43 16 12 C -0.12 -2.02 9.70 -39.59 -0.38 -2.40 16 13 N -0.63 -13.00 1.24 -167.75 -0.21 -13.21 16 14 C 0.13 2.28 3.97 -4.04 -0.02 2.26 16 15 C -0.15 -2.41 5.01 -26.73 -0.13 -2.54 16 16 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 17 C 0.57 15.18 7.61 -12.99 -0.10 15.09 16 18 O -0.57 -17.94 14.37 5.20 0.07 -17.87 16 19 C -0.54 -14.69 8.76 -35.63 -0.31 -15.00 16 20 H 0.07 1.75 5.95 -52.49 -0.31 1.43 16 21 C 0.09 2.48 5.49 -17.37 -0.10 2.39 16 22 N -0.77 -22.82 11.85 55.55 0.66 -22.16 16 23 Si 0.90 20.18 29.56 -169.99 -5.03 15.15 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.45 6.45 -51.93 -0.34 1.12 16 32 H 0.06 0.91 5.72 -51.93 -0.30 0.61 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 35 H 0.07 0.98 6.42 -51.93 -0.33 0.65 16 36 H 0.12 2.01 7.46 -52.48 -0.39 1.61 16 37 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.05 0.71 6.34 -51.93 -0.33 0.38 16 42 H 0.07 1.43 6.03 -51.93 -0.31 1.12 16 43 H 0.06 0.99 4.56 -51.93 -0.24 0.75 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.27 7.26 8.29 -40.82 -0.34 6.93 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -32.50 376.97 -9.68 -42.18 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.96 Total: 7.87 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -2.90 Total: -17.64 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.45 Total: -35.37 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.07 Total: -17.87 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.50 -9.68 -42.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356195175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.695 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds