Wall clock time and date at job start Tue Mar 31 2020 08:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47419 * 2 1 4 4 C 1.52999 * 109.47419 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46791 * 55.00074 * 4 3 2 6 6 C 1.53000 * 109.46855 * 174.99996 * 4 3 2 7 7 C 1.50705 * 109.46710 * 184.99724 * 6 4 3 8 8 C 1.38234 * 120.00349 * 269.72795 * 7 6 4 9 9 C 1.38237 * 120.00149 * 179.76447 * 8 7 6 10 10 C 1.38232 * 119.99827 * 0.51273 * 9 8 7 11 11 C 1.38238 * 119.99886 * 359.73857 * 10 9 8 12 12 C 1.38232 * 119.99829 * 90.00042 * 7 6 4 13 13 N 1.46504 * 109.46896 * 294.99955 * 4 3 2 14 14 C 1.46498 * 119.99952 * 300.00112 * 13 4 3 15 15 C 1.53001 * 109.47310 * 90.00069 * 14 13 4 16 16 C 1.52999 * 109.46768 * 179.97438 * 15 14 13 17 17 C 1.34776 * 119.99803 * 119.99952 * 13 4 3 18 18 O 1.21686 * 119.99923 * 0.02562 * 17 13 4 19 19 C 1.46379 * 119.99740 * 179.97438 * 17 13 4 20 20 H 1.07997 * 119.99639 * 355.03403 * 19 17 13 21 21 C 1.40048 * 119.99576 * 175.03191 * 19 17 13 22 22 N 1.30670 * 120.00388 * 6.22489 * 21 19 17 23 23 Si 1.86799 * 119.99698 * 186.22058 * 21 19 17 24 24 H 1.48501 * 109.47203 * 94.98464 * 23 21 19 25 25 H 1.48506 * 109.46985 * 214.98389 * 23 21 19 26 26 H 1.48501 * 109.47205 * 334.98037 * 23 21 19 27 27 H 1.09001 * 109.46964 * 300.00393 * 1 2 3 28 28 H 1.09001 * 109.47114 * 60.00036 * 1 2 3 29 29 H 1.08995 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46964 * 239.99607 * 2 1 3 31 31 H 1.09001 * 109.47114 * 119.99964 * 2 1 3 32 32 H 1.09006 * 109.46940 * 59.99268 * 3 2 1 33 33 H 1.09001 * 109.46948 * 300.00065 * 3 2 1 34 34 H 1.08997 * 109.47275 * 304.99487 * 6 4 3 35 35 H 1.09001 * 109.47455 * 65.00514 * 6 4 3 36 36 H 1.08008 * 119.99851 * 0.02562 * 8 7 6 37 37 H 1.08000 * 119.99817 * 180.22867 * 9 8 7 38 38 H 1.07995 * 120.00066 * 179.72687 * 10 9 8 39 39 H 1.08001 * 119.99836 * 179.97438 * 11 10 9 40 40 H 1.08000 * 120.00108 * 359.97438 * 12 7 6 41 41 H 1.09002 * 109.47298 * 329.99801 * 14 13 4 42 42 H 1.09005 * 109.46970 * 210.00233 * 14 13 4 43 43 H 1.08999 * 109.46906 * 299.99379 * 15 14 13 44 44 H 1.08992 * 109.46902 * 60.00129 * 15 14 13 45 45 H 1.09002 * 109.47520 * 59.99928 * 16 15 14 46 46 H 1.09002 * 109.46730 * 180.02562 * 16 15 14 47 47 H 1.08996 * 109.47651 * 299.99587 * 16 15 14 48 48 H 0.96998 * 119.99925 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0800 2.8795 -0.1251 7 6 5.5820 2.8704 -0.2479 8 6 6.3688 2.9414 0.8865 9 6 7.7465 2.9282 0.7741 10 6 8.3375 2.8547 -0.4734 11 6 7.5507 2.7889 -1.6081 12 6 6.1730 2.7968 -1.4953 13 7 4.0578 0.8589 1.2528 14 6 3.7033 1.4737 2.5344 15 6 2.4020 0.8580 3.0528 16 6 2.0323 1.4997 4.3916 17 6 4.8326 -0.2435 1.2256 18 8 5.1274 -0.7539 0.1610 19 6 5.3204 -0.8263 2.4767 20 1 5.1272 -0.3287 3.4155 21 6 6.0377 -2.0290 2.4560 22 7 6.3768 -2.5680 1.3150 23 14 6.5096 -2.8626 4.0597 24 1 5.4909 -3.8868 4.4037 25 1 7.8352 -3.5145 3.9073 26 1 6.5780 -1.8491 5.1430 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.6459 3.3429 -1.0109 35 1 3.7914 3.4462 0.7601 36 1 5.9070 3.0030 1.8609 37 1 8.3611 2.9800 1.6607 38 1 9.4138 2.8488 -0.5615 39 1 8.0125 2.7318 -2.5828 40 1 5.5584 2.7453 -2.3819 41 1 3.5685 2.5466 2.3978 42 1 4.5015 1.2967 3.2554 43 1 1.6039 1.0351 2.3319 44 1 2.5369 -0.2148 3.1895 45 1 1.8976 2.5728 4.2554 46 1 1.1055 1.0608 4.7611 47 1 2.8304 1.3224 5.1124 48 1 6.8733 -3.4012 1.3008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356195175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:52 Heat of formation + Delta-G solvation = -51.621658 kcal Electronic energy + Delta-G solvation = -26616.006931 eV Core-core repulsion = 23248.219441 eV Total energy + Delta-G solvation = -3367.787490 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 6.55 seconds Orbital eigenvalues (eV) -40.76411 -39.48832 -37.30412 -35.30585 -34.62161 -34.25369 -32.56863 -31.66530 -30.50184 -28.07022 -27.09630 -26.70041 -23.61404 -23.40851 -22.34550 -22.24407 -21.69251 -20.14991 -18.47869 -17.82156 -17.57913 -16.75136 -16.13359 -15.93167 -15.71689 -15.56857 -15.46247 -15.08516 -14.58618 -14.33443 -14.23913 -14.06819 -13.78368 -13.64062 -13.44275 -13.26072 -13.07884 -12.82429 -12.79962 -12.71378 -12.56191 -12.27731 -12.22581 -12.07272 -11.98686 -11.87803 -11.77022 -11.53715 -11.45752 -11.28337 -11.12823 -10.87152 -9.70351 -9.59278 -9.48095 -8.80809 -8.20220 -6.69807 0.58366 0.62376 1.36408 1.36920 1.50998 2.24450 2.58440 2.96228 2.98323 3.75915 3.86564 4.03750 4.08361 4.18763 4.21066 4.25202 4.29699 4.32624 4.42139 4.46068 4.62634 4.68796 4.69350 4.70833 4.73220 4.83119 4.87266 4.92288 4.94689 4.99776 5.10303 5.16285 5.18849 5.25810 5.28120 5.29476 5.38442 5.40392 5.44028 5.51728 5.54398 5.65550 5.69380 5.73278 5.84421 5.97888 6.25753 6.28198 6.66199 6.98943 7.63720 8.62182 8.84438 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.008760 B = 0.007763 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.405375 B = 3606.082225 C = 5289.521570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C -0.116 4.116 4 C 0.151 3.849 5 H 0.046 0.954 6 C -0.083 4.083 7 C -0.078 4.078 8 C -0.115 4.115 9 C -0.135 4.135 10 C -0.141 4.141 11 C -0.133 4.133 12 C -0.135 4.135 13 N -0.620 5.620 14 C 0.128 3.872 15 C -0.142 4.142 16 C -0.140 4.140 17 C 0.560 3.440 18 O -0.631 6.631 19 C -0.562 4.562 20 H 0.083 0.917 21 C 0.033 3.967 22 N -0.822 5.822 23 Si 0.976 3.024 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.248 1.248 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.027 0.973 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.048 0.952 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.937 13.002 1.752 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C -0.154 4.154 4 C 0.046 3.954 5 H 0.064 0.936 6 C -0.121 4.121 7 C -0.078 4.078 8 C -0.133 4.133 9 C -0.153 4.153 10 C -0.159 4.159 11 C -0.151 4.151 12 C -0.153 4.153 13 N -0.354 5.354 14 C 0.004 3.996 15 C -0.181 4.181 16 C -0.198 4.198 17 C 0.365 3.635 18 O -0.517 6.517 19 C -0.599 4.599 20 H 0.101 0.899 21 C -0.181 4.181 22 N -0.452 5.452 23 Si 0.797 3.203 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.171 1.171 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.145 0.855 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.693 12.612 1.075 14.318 hybrid contribution 0.727 -1.200 0.438 1.469 sum -5.967 11.412 1.513 12.966 Atomic orbital electron populations 1.21691 0.93846 1.01469 1.02545 1.21412 0.96825 0.97393 1.00121 1.21990 0.93641 0.96414 1.03309 1.20745 0.93738 0.92573 0.88344 0.93599 1.21022 0.90387 0.96736 1.03923 1.20011 0.96645 0.98039 0.93142 1.21120 0.93997 0.99899 0.98318 1.21359 0.95339 1.00407 0.98173 1.21334 1.00565 1.01254 0.92755 1.21352 0.94043 1.00374 0.99299 1.21242 0.95456 1.01076 0.97490 1.47637 1.53479 1.29314 1.04958 1.21336 0.96307 0.96621 0.85289 1.22118 0.98159 0.99589 0.98207 1.21660 1.01140 1.01148 0.95875 1.18243 0.77092 0.78667 0.89488 1.90546 1.62940 1.63950 1.34313 1.21424 1.36695 1.08254 0.93479 0.89872 1.26780 0.93475 0.97560 1.00290 1.70215 1.29737 1.16561 1.28711 0.85316 0.77853 0.78836 0.78270 1.19223 1.20222 1.17120 0.91634 0.91502 0.93527 0.95421 0.94288 0.89755 0.89766 0.88611 0.89391 0.86366 0.85431 0.84721 0.84636 0.85485 0.90191 0.92421 0.90734 0.94773 0.91164 0.92224 0.93291 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.91 71.98 0.71 -2.72 16 2 C -0.12 -4.02 5.17 30.59 0.16 -3.86 16 3 C -0.12 -3.32 4.16 30.59 0.13 -3.20 16 4 C 0.15 5.53 2.02 44.99 0.09 5.62 16 5 H 0.05 2.14 6.90 -2.39 -0.02 2.12 16 6 C -0.08 -2.45 4.78 29.85 0.14 -2.30 16 7 C -0.08 -2.76 4.95 -19.87 -0.10 -2.86 16 8 C -0.12 -4.18 9.32 22.27 0.21 -3.97 16 9 C -0.13 -4.74 10.05 22.27 0.22 -4.51 16 10 C -0.14 -4.70 10.05 22.27 0.22 -4.48 16 11 C -0.13 -4.40 10.05 22.27 0.22 -4.18 16 12 C -0.13 -4.65 9.70 22.27 0.22 -4.44 16 13 N -0.62 -26.05 1.24 -802.87 -1.00 -27.05 16 14 C 0.13 4.34 3.97 86.38 0.34 4.69 16 15 C -0.14 -4.34 5.01 30.59 0.15 -4.19 16 16 C -0.14 -3.25 9.91 71.98 0.71 -2.54 16 17 C 0.56 31.39 7.61 86.36 0.66 32.04 16 18 O -0.63 -41.85 14.37 -4.30 -0.06 -41.91 16 19 C -0.56 -31.48 8.76 24.83 0.22 -31.26 16 20 H 0.08 4.26 5.95 -2.91 -0.02 4.25 16 21 C 0.03 1.89 5.49 85.30 0.47 2.36 16 22 N -0.82 -51.29 11.85 21.84 0.26 -51.03 16 23 Si 0.98 42.21 29.56 68.60 2.03 44.24 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 1.57 6.45 -2.39 -0.02 1.55 16 32 H 0.08 2.10 5.72 -2.38 -0.01 2.09 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.10 2.31 8.09 -2.39 -0.02 2.29 16 35 H 0.09 2.24 6.42 -2.39 -0.02 2.23 16 36 H 0.12 4.06 7.46 -2.91 -0.02 4.04 16 37 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 39 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 40 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 41 H 0.08 2.19 6.34 -2.39 -0.02 2.18 16 42 H 0.06 2.17 6.03 -2.38 -0.01 2.15 16 43 H 0.07 2.11 4.56 -2.39 -0.01 2.09 16 44 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.27 15.35 8.29 -92.71 -0.77 14.58 16 Total: -1.00 -76.53 376.97 6.93 -69.60 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.92 Total: 35.95 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 4.78 Total: -29.79 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -0.74 Total: -78.09 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -0.06 Total: -41.91 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -76.53 6.93 -69.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356195175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.978 kcal (2) G-P(sol) polarization free energy of solvation -76.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.55 seconds