Wall clock time and date at job start Tue Mar 31 2020 08:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47216 * 2 1 4 4 C 1.53006 * 109.46930 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47261 * 304.99661 * 4 3 2 6 6 C 1.53002 * 109.46805 * 184.99877 * 4 3 2 7 7 C 1.50700 * 109.47028 * 66.49217 * 6 4 3 8 8 C 1.38226 * 120.00454 * 271.63391 * 7 6 4 9 9 C 1.38232 * 120.00588 * 179.76761 * 8 7 6 10 10 C 1.38234 * 119.99660 * 0.50566 * 9 8 7 11 11 C 1.38234 * 119.99914 * 359.74929 * 10 9 8 12 12 C 1.38236 * 120.00063 * 359.97438 * 11 10 9 13 13 N 1.46492 * 109.46916 * 65.00007 * 4 3 2 14 14 C 1.46498 * 120.00364 * 65.00919 * 13 4 3 15 15 C 1.53000 * 109.47439 * 96.03448 * 14 13 4 16 16 C 1.53002 * 109.47561 * 174.88760 * 15 14 13 17 17 C 1.34783 * 120.00217 * 245.00379 * 13 4 3 18 18 O 1.21689 * 119.99672 * 0.02562 * 17 13 4 19 19 C 1.46374 * 120.00256 * 180.02562 * 17 13 4 20 20 H 1.08002 * 119.99861 * 0.02562 * 19 17 13 21 21 C 1.40046 * 119.99695 * 180.02562 * 19 17 13 22 22 N 1.30675 * 120.00323 * 0.02562 * 21 19 17 23 23 Si 1.86805 * 119.99840 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47124 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47470 * 119.99956 * 23 21 19 26 26 H 1.48498 * 109.47086 * 240.00054 * 23 21 19 27 27 H 1.09001 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47224 * 300.00339 * 1 2 3 29 29 H 1.09005 * 109.46670 * 59.99917 * 1 2 3 30 30 H 1.09000 * 109.47224 * 239.99661 * 2 1 3 31 31 H 1.09005 * 109.46670 * 120.00083 * 2 1 3 32 32 H 1.09000 * 109.47300 * 59.99708 * 3 2 1 33 33 H 1.08997 * 109.46728 * 299.99593 * 3 2 1 34 34 H 1.08994 * 109.46983 * 186.49554 * 6 4 3 35 35 H 1.09000 * 109.47117 * 306.49540 * 6 4 3 36 36 H 1.08012 * 119.99918 * 0.02562 * 8 7 6 37 37 H 1.08000 * 120.00829 * 180.22905 * 9 8 7 38 38 H 1.07999 * 120.00290 * 179.72120 * 10 9 8 39 39 H 1.08005 * 119.99964 * 179.97438 * 11 10 9 40 40 H 1.08004 * 119.99819 * 179.97438 * 12 11 10 41 41 H 1.09001 * 109.47165 * 336.03378 * 14 13 4 42 42 H 1.08996 * 109.47493 * 216.03839 * 14 13 4 43 43 H 1.09003 * 109.47251 * 294.88792 * 15 14 13 44 44 H 1.09004 * 109.46921 * 54.88360 * 15 14 13 45 45 H 1.09000 * 109.47429 * 180.02562 * 16 15 14 46 46 H 1.09009 * 109.46575 * 299.99959 * 16 15 14 47 47 H 1.08993 * 109.46870 * 59.99890 * 16 15 14 48 48 H 0.96994 * 119.99518 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0800 2.8795 0.1263 7 6 3.7126 3.4261 1.4818 8 6 2.4947 4.0531 1.6673 9 6 2.1556 4.5503 2.9117 10 6 3.0388 4.4297 3.9682 11 6 4.2590 3.8074 3.7815 12 6 4.5956 3.3051 2.5384 13 7 4.0588 0.8585 -1.2508 14 6 3.7982 1.5331 -2.5249 15 6 5.0073 2.3902 -2.9049 16 6 4.7887 2.9934 -4.2939 17 6 4.7484 -0.2994 -1.2302 18 8 4.9646 -0.8599 -0.1719 19 6 5.2373 -0.8825 -2.4806 20 1 5.0457 -0.3848 -3.4197 21 6 5.9533 -2.0859 -2.4590 22 7 6.1846 -2.6884 -1.3228 23 14 6.5778 -2.8298 -4.0547 24 1 6.1864 -1.9600 -5.1929 25 1 8.0576 -2.9419 -4.0028 26 1 5.9853 -4.1792 -4.2370 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 5.1638 2.8918 0.0112 35 1 3.6252 3.4956 -0.6493 36 1 1.8062 4.1509 0.8408 37 1 1.2025 5.0369 3.0576 38 1 2.7759 4.8221 4.9394 39 1 4.9492 3.7135 4.6069 40 1 5.5491 2.8193 2.3924 41 1 2.9186 2.1692 -2.4259 42 1 3.6225 0.7884 -3.3011 43 1 5.1283 3.1914 -2.1758 44 1 5.9036 1.7699 -2.9150 45 1 5.6503 3.6036 -4.5648 46 1 4.6678 2.1920 -5.0230 47 1 3.8925 3.6136 -4.2837 48 1 6.6808 -3.5217 -1.3079 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356195176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:10 Heat of formation + Delta-G solvation = -40.762642 kcal Electronic energy + Delta-G solvation = -25906.173844 eV Core-core repulsion = 22538.857237 eV Total energy + Delta-G solvation = -3367.316607 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 8.92 seconds Orbital eigenvalues (eV) -39.48862 -38.18463 -35.42915 -34.27912 -32.84733 -32.48339 -31.33120 -30.76233 -28.87113 -26.15570 -26.05611 -25.28933 -22.46563 -22.31164 -21.19108 -20.61949 -20.35211 -18.51242 -16.86163 -16.32409 -15.90954 -15.09915 -15.03851 -14.92119 -14.33807 -14.16687 -13.86225 -13.64060 -13.36707 -13.11171 -12.93919 -12.77283 -12.53811 -12.34307 -12.17908 -11.88943 -11.64511 -11.46691 -11.35529 -11.15701 -11.08794 -10.98966 -10.84051 -10.67391 -10.63801 -10.33758 -10.17993 -10.13838 -10.06707 -9.94704 -9.87339 -8.84258 -8.76521 -8.52501 -7.52491 -7.13869 -6.16516 -4.60453 1.50858 1.53810 3.12669 3.21674 3.25137 3.91520 4.10305 4.52408 4.59115 4.98915 5.05574 5.14530 5.24606 5.28722 5.49696 5.52344 5.53928 5.57421 5.63014 5.66934 5.76868 5.80247 5.84929 5.94855 5.97900 6.00945 6.04935 6.13725 6.21461 6.23516 6.30883 6.33595 6.36566 6.42334 6.45622 6.58036 6.61667 6.63383 6.69619 6.76707 6.85120 6.91193 6.97658 7.01366 7.16028 7.47695 7.73966 8.20311 8.42846 9.05916 9.48800 10.61388 10.81226 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014556 B = 0.004366 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.175145 B = 6411.832314 C = 6562.263444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.126 4.126 4 C 0.155 3.845 5 H 0.093 0.907 6 C -0.091 4.091 7 C -0.065 4.065 8 C -0.117 4.117 9 C -0.123 4.123 10 C -0.133 4.133 11 C -0.119 4.119 12 C -0.114 4.114 13 N -0.634 5.634 14 C 0.133 3.867 15 C -0.146 4.146 16 C -0.146 4.146 17 C 0.560 3.440 18 O -0.577 6.577 19 C -0.540 4.540 20 H 0.072 0.928 21 C 0.088 3.912 22 N -0.767 5.767 23 Si 0.900 3.100 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.277 1.277 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.046 0.954 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 12.957 2.365 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.164 4.164 4 C 0.050 3.950 5 H 0.111 0.889 6 C -0.129 4.129 7 C -0.065 4.065 8 C -0.135 4.135 9 C -0.141 4.141 10 C -0.151 4.151 11 C -0.137 4.137 12 C -0.133 4.133 13 N -0.370 5.370 14 C 0.008 3.992 15 C -0.185 4.185 16 C -0.204 4.204 17 C 0.366 3.634 18 O -0.459 6.459 19 C -0.576 4.576 20 H 0.090 0.910 21 C -0.131 4.131 22 N -0.396 5.396 23 Si 0.725 3.275 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.203 1.203 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.932 12.453 3.046 14.574 hybrid contribution 0.334 -0.299 -0.855 0.965 sum -6.598 12.153 2.191 14.001 Atomic orbital electron populations 1.21763 0.97014 1.00898 1.00733 1.21397 0.94093 0.96957 1.03103 1.22026 0.96489 0.97022 1.00895 1.20563 0.92132 0.91476 0.90832 0.88909 1.21140 1.01893 0.97361 0.92541 1.19970 0.94004 0.96597 0.95949 1.21051 0.96384 0.98806 0.97290 1.21076 0.99321 1.00441 0.93269 1.21056 0.94643 1.00698 0.98699 1.21120 0.96858 0.98610 0.97154 1.21161 0.99932 0.99461 0.92701 1.48046 1.59965 1.25409 1.03570 1.21104 0.95190 0.95246 0.87661 1.22090 1.01241 0.99456 0.95683 1.21698 1.00522 1.00355 0.97842 1.18203 0.76866 0.77855 0.90458 1.90594 1.60837 1.61351 1.33151 1.21040 1.36543 1.07378 0.92681 0.90986 1.25712 0.94427 0.96436 0.96541 1.70033 1.29837 1.14025 1.25726 0.86430 0.78833 0.79331 0.82892 1.18746 1.20255 1.20261 0.93304 0.93516 0.93360 0.91240 0.92305 0.91981 0.92716 0.90747 0.91289 0.86235 0.86538 0.86641 0.86406 0.85984 0.93234 0.91014 0.92797 0.90648 0.93437 0.92768 0.93534 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.73 16 2 C -0.12 -2.10 5.82 -26.73 -0.16 -2.25 16 3 C -0.13 -2.04 4.39 -26.73 -0.12 -2.16 16 4 C 0.16 2.92 2.06 -67.93 -0.14 2.78 16 5 H 0.09 2.10 6.91 -51.93 -0.36 1.74 16 6 C -0.09 -1.43 3.58 -27.88 -0.10 -1.53 16 7 C -0.06 -0.94 4.80 -104.63 -0.50 -1.44 16 8 C -0.12 -1.51 7.87 -39.59 -0.31 -1.82 16 9 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 10 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 11 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 12 C -0.11 -1.66 9.69 -39.58 -0.38 -2.04 16 13 N -0.63 -13.48 1.84 -167.76 -0.31 -13.79 16 14 C 0.13 2.37 4.22 -4.04 -0.02 2.35 16 15 C -0.15 -2.39 5.85 -26.73 -0.16 -2.55 16 16 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 17 C 0.56 15.19 7.50 -12.98 -0.10 15.09 16 18 O -0.58 -18.01 14.35 5.20 0.07 -17.93 16 19 C -0.54 -14.62 8.19 -35.63 -0.29 -14.92 16 20 H 0.07 1.80 5.97 -52.49 -0.31 1.49 16 21 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 22 N -0.77 -22.64 11.83 55.55 0.66 -21.99 16 23 Si 0.90 19.92 29.56 -169.99 -5.02 14.90 16 24 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.44 7.68 -51.93 -0.40 1.04 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.93 5.82 -51.93 -0.30 0.63 16 33 H 0.05 0.83 6.77 -51.93 -0.35 0.47 16 34 H 0.07 1.27 7.72 -51.93 -0.40 0.87 16 35 H 0.07 0.99 7.12 -51.93 -0.37 0.62 16 36 H 0.12 1.37 7.82 -52.48 -0.41 0.96 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 40 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.05 0.77 6.49 -51.93 -0.34 0.43 16 42 H 0.07 1.37 6.45 -51.93 -0.34 1.04 16 43 H 0.05 0.84 6.23 -51.93 -0.32 0.51 16 44 H 0.07 1.46 7.55 -51.93 -0.39 1.07 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.27 7.17 8.29 -40.82 -0.34 6.84 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -31.82 378.39 -9.80 -41.63 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -8.08 Total: 6.67 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -2.82 Total: -15.19 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.35 Total: -35.77 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.07 Total: -17.93 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.82 -9.80 -41.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356195176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.864 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.92 seconds