Wall clock time and date at job start Tue Mar 31 2020 08:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47216 * 2 1 4 4 C 1.53006 * 109.46930 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47261 * 304.99661 * 4 3 2 6 6 C 1.53002 * 109.46805 * 184.99877 * 4 3 2 7 7 C 1.50700 * 109.47028 * 66.49217 * 6 4 3 8 8 C 1.38226 * 120.00454 * 271.63391 * 7 6 4 9 9 C 1.38232 * 120.00588 * 179.76761 * 8 7 6 10 10 C 1.38234 * 119.99660 * 0.50566 * 9 8 7 11 11 C 1.38234 * 119.99914 * 359.74929 * 10 9 8 12 12 C 1.38236 * 120.00063 * 359.97438 * 11 10 9 13 13 N 1.46492 * 109.46916 * 65.00007 * 4 3 2 14 14 C 1.46498 * 120.00364 * 65.00919 * 13 4 3 15 15 C 1.53000 * 109.47439 * 96.03448 * 14 13 4 16 16 C 1.53002 * 109.47561 * 174.88760 * 15 14 13 17 17 C 1.34783 * 120.00217 * 245.00379 * 13 4 3 18 18 O 1.21689 * 119.99672 * 0.02562 * 17 13 4 19 19 C 1.46374 * 120.00256 * 180.02562 * 17 13 4 20 20 H 1.08002 * 119.99861 * 0.02562 * 19 17 13 21 21 C 1.40046 * 119.99695 * 180.02562 * 19 17 13 22 22 N 1.30675 * 120.00323 * 0.02562 * 21 19 17 23 23 Si 1.86805 * 119.99840 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47124 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47470 * 119.99956 * 23 21 19 26 26 H 1.48498 * 109.47086 * 240.00054 * 23 21 19 27 27 H 1.09001 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47224 * 300.00339 * 1 2 3 29 29 H 1.09005 * 109.46670 * 59.99917 * 1 2 3 30 30 H 1.09000 * 109.47224 * 239.99661 * 2 1 3 31 31 H 1.09005 * 109.46670 * 120.00083 * 2 1 3 32 32 H 1.09000 * 109.47300 * 59.99708 * 3 2 1 33 33 H 1.08997 * 109.46728 * 299.99593 * 3 2 1 34 34 H 1.08994 * 109.46983 * 186.49554 * 6 4 3 35 35 H 1.09000 * 109.47117 * 306.49540 * 6 4 3 36 36 H 1.08012 * 119.99918 * 0.02562 * 8 7 6 37 37 H 1.08000 * 120.00829 * 180.22905 * 9 8 7 38 38 H 1.07999 * 120.00290 * 179.72120 * 10 9 8 39 39 H 1.08005 * 119.99964 * 179.97438 * 11 10 9 40 40 H 1.08004 * 119.99819 * 179.97438 * 12 11 10 41 41 H 1.09001 * 109.47165 * 336.03378 * 14 13 4 42 42 H 1.08996 * 109.47493 * 216.03839 * 14 13 4 43 43 H 1.09003 * 109.47251 * 294.88792 * 15 14 13 44 44 H 1.09004 * 109.46921 * 54.88360 * 15 14 13 45 45 H 1.09000 * 109.47429 * 180.02562 * 16 15 14 46 46 H 1.09009 * 109.46575 * 299.99959 * 16 15 14 47 47 H 1.08993 * 109.46870 * 59.99890 * 16 15 14 48 48 H 0.96994 * 119.99518 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0800 2.8795 0.1263 7 6 3.7126 3.4261 1.4818 8 6 2.4947 4.0531 1.6673 9 6 2.1556 4.5503 2.9117 10 6 3.0388 4.4297 3.9682 11 6 4.2590 3.8074 3.7815 12 6 4.5956 3.3051 2.5384 13 7 4.0588 0.8585 -1.2508 14 6 3.7982 1.5331 -2.5249 15 6 5.0073 2.3902 -2.9049 16 6 4.7887 2.9934 -4.2939 17 6 4.7484 -0.2994 -1.2302 18 8 4.9646 -0.8599 -0.1719 19 6 5.2373 -0.8825 -2.4806 20 1 5.0457 -0.3848 -3.4197 21 6 5.9533 -2.0859 -2.4590 22 7 6.1846 -2.6884 -1.3228 23 14 6.5778 -2.8298 -4.0547 24 1 6.1864 -1.9600 -5.1929 25 1 8.0576 -2.9419 -4.0028 26 1 5.9853 -4.1792 -4.2370 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 5.1638 2.8918 0.0112 35 1 3.6252 3.4956 -0.6493 36 1 1.8062 4.1509 0.8408 37 1 1.2025 5.0369 3.0576 38 1 2.7759 4.8221 4.9394 39 1 4.9492 3.7135 4.6069 40 1 5.5491 2.8193 2.3924 41 1 2.9186 2.1692 -2.4259 42 1 3.6225 0.7884 -3.3011 43 1 5.1283 3.1914 -2.1758 44 1 5.9036 1.7699 -2.9150 45 1 5.6503 3.6036 -4.5648 46 1 4.6678 2.1920 -5.0230 47 1 3.8925 3.6136 -4.2837 48 1 6.6808 -3.5217 -1.3079 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356195176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:59 Heat of formation + Delta-G solvation = -56.967474 kcal Electronic energy + Delta-G solvation = -25906.876539 eV Core-core repulsion = 22538.857237 eV Total energy + Delta-G solvation = -3368.019302 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.78947 -39.66629 -37.25630 -35.73124 -34.61125 -34.03330 -32.82014 -31.74516 -30.25960 -28.07170 -27.35357 -26.71996 -23.73057 -23.47039 -22.55322 -22.09377 -21.68911 -20.18675 -18.50701 -17.95981 -17.38711 -16.82738 -16.21818 -16.06966 -15.80505 -15.69858 -15.32282 -15.07164 -14.68386 -14.39547 -14.21161 -14.07603 -13.93317 -13.73265 -13.53220 -13.31732 -13.10834 -12.90077 -12.84052 -12.77881 -12.68659 -12.32418 -12.15447 -12.00950 -11.97750 -11.87092 -11.77150 -11.57593 -11.49080 -11.48378 -11.30532 -10.91953 -9.76884 -9.68789 -9.60913 -8.90724 -8.24281 -6.76788 0.49318 0.54400 1.37074 1.37605 1.54288 2.23512 2.51458 2.81652 2.99008 3.68312 3.81908 3.98628 4.02287 4.13049 4.19284 4.21280 4.24081 4.32477 4.37782 4.43213 4.50882 4.63767 4.66419 4.69561 4.71074 4.74117 4.84011 4.90505 4.91502 4.97070 5.04569 5.14680 5.16251 5.21202 5.22193 5.27679 5.35688 5.37664 5.39017 5.45483 5.51508 5.61155 5.63304 5.66118 5.80419 5.91594 6.17770 6.23107 6.56544 6.93402 7.53404 8.55829 8.75114 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014556 B = 0.004366 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.175145 B = 6411.832314 C = 6562.263444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C -0.112 4.112 4 C 0.155 3.845 5 H 0.040 0.960 6 C -0.075 4.075 7 C -0.084 4.084 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.130 4.130 11 C -0.128 4.128 12 C -0.142 4.142 13 N -0.631 5.631 14 C 0.130 3.870 15 C -0.139 4.139 16 C -0.139 4.139 17 C 0.547 3.453 18 O -0.633 6.633 19 C -0.560 4.560 20 H 0.089 0.911 21 C 0.030 3.970 22 N -0.824 5.824 23 Si 0.985 3.015 24 H -0.245 1.245 25 H -0.271 1.271 26 H -0.271 1.271 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.030 0.970 31 H 0.024 0.976 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.141 0.859 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.132 0.868 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.036 0.964 45 H 0.059 0.941 46 H 0.050 0.950 47 H 0.071 0.929 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.632 15.853 0.962 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.150 4.150 4 C 0.051 3.949 5 H 0.059 0.941 6 C -0.113 4.113 7 C -0.084 4.084 8 C -0.137 4.137 9 C -0.138 4.138 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.160 4.160 13 N -0.365 5.365 14 C 0.007 3.993 15 C -0.178 4.178 16 C -0.196 4.196 17 C 0.353 3.647 18 O -0.520 6.520 19 C -0.597 4.597 20 H 0.107 0.893 21 C -0.185 4.185 22 N -0.454 5.454 23 Si 0.805 3.195 24 H -0.168 1.168 25 H -0.197 1.197 26 H -0.196 1.196 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.159 0.841 37 H 0.168 0.832 38 H 0.163 0.837 39 H 0.150 0.850 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.459 15.412 1.620 18.155 hybrid contribution 1.083 -1.131 -0.298 1.594 sum -8.376 14.281 1.321 16.608 Atomic orbital electron populations 1.21684 0.93498 1.01605 1.02623 1.21339 0.97115 0.97357 0.99593 1.21933 0.93908 0.96231 1.02962 1.20627 0.94137 0.92348 0.87822 0.94119 1.20906 1.00371 0.95402 0.94609 1.19894 0.95375 0.98230 0.94941 1.21279 0.95544 0.98106 0.98721 1.21493 1.00432 0.99398 0.92453 1.21459 0.93722 0.99414 1.00223 1.21352 0.98072 0.98508 0.96647 1.21204 0.99743 1.00822 0.94238 1.47841 1.58562 1.24184 1.05904 1.21318 0.97284 0.95287 0.85423 1.21984 0.98715 0.98856 0.98257 1.21641 1.02295 1.00552 0.95156 1.18511 0.77117 0.79209 0.89879 1.90546 1.63074 1.63561 1.34824 1.21497 1.36777 1.08027 0.93349 0.89327 1.26900 0.94147 0.96725 1.00684 1.70219 1.31305 1.14866 1.29004 0.85157 0.78118 0.78450 0.77792 1.16772 1.19656 1.19593 0.93358 0.91501 0.91410 0.95079 0.95690 0.89888 0.90174 0.93235 0.88874 0.84139 0.83233 0.83680 0.84999 0.88147 0.89690 0.92340 0.91950 0.94463 0.92229 0.93089 0.91008 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.91 71.98 0.71 -2.95 16 2 C -0.12 -4.25 5.82 30.59 0.18 -4.07 16 3 C -0.11 -3.55 4.39 30.60 0.13 -3.41 16 4 C 0.16 6.09 2.06 45.00 0.09 6.18 16 5 H 0.04 2.03 6.91 -2.39 -0.02 2.01 16 6 C -0.07 -2.38 3.58 29.85 0.11 -2.27 16 7 C -0.08 -2.42 4.80 -19.87 -0.10 -2.51 16 8 C -0.12 -2.70 7.87 22.27 0.18 -2.52 16 9 C -0.12 -2.34 10.05 22.27 0.22 -2.11 16 10 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 11 C -0.13 -3.16 10.05 22.27 0.22 -2.94 16 12 C -0.14 -4.30 9.69 22.27 0.22 -4.08 16 13 N -0.63 -28.04 1.84 -802.89 -1.48 -29.52 16 14 C 0.13 4.57 4.22 86.38 0.36 4.94 16 15 C -0.14 -4.48 5.85 30.60 0.18 -4.31 16 16 C -0.14 -3.36 9.91 71.98 0.71 -2.65 16 17 C 0.55 31.71 7.50 86.36 0.65 32.36 16 18 O -0.63 -43.00 14.35 -4.31 -0.06 -43.06 16 19 C -0.56 -31.70 8.19 24.83 0.20 -31.50 16 20 H 0.09 4.54 5.97 -2.91 -0.02 4.53 16 21 C 0.03 1.69 5.50 85.30 0.47 2.16 16 22 N -0.82 -51.50 11.83 21.84 0.26 -51.24 16 23 Si 0.98 41.86 29.56 68.60 2.03 43.89 16 24 H -0.24 -9.55 7.11 99.48 0.71 -8.84 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.03 1.35 7.68 -2.39 -0.02 1.33 16 31 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.08 2.31 5.82 -2.39 -0.01 2.30 16 33 H 0.08 2.15 6.77 -2.39 -0.02 2.13 16 34 H 0.05 1.79 7.72 -2.39 -0.02 1.77 16 35 H 0.09 2.47 7.12 -2.39 -0.02 2.45 16 36 H 0.14 2.57 7.82 -2.90 -0.02 2.55 16 37 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.10 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.08 2.38 6.49 -2.39 -0.02 2.37 16 42 H 0.06 2.22 6.45 -2.39 -0.02 2.20 16 43 H 0.06 1.88 6.23 -2.39 -0.01 1.87 16 44 H 0.04 1.47 7.55 -2.39 -0.02 1.46 16 45 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.27 15.39 8.29 -92.71 -0.77 14.62 16 Total: -1.00 -77.40 378.39 6.44 -70.96 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.92 Total: 31.07 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 4.77 Total: -22.10 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -1.22 Total: -80.76 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.06 Total: -43.06 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -77.40 6.44 -70.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356195176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.993 kcal (2) G-P(sol) polarization free energy of solvation -77.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds