Wall clock time and date at job start Tue Mar 31 2020 07:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50695 * 120.00257 * 2 1 4 4 C 1.31004 * 119.99875 * 180.02562 * 2 1 3 5 5 C 1.50704 * 119.99695 * 0.02562 * 4 2 1 6 6 C 1.53006 * 109.46894 * 125.00128 * 5 4 2 7 7 N 1.46900 * 109.47078 * 179.97438 * 6 5 4 8 8 C 1.46896 * 111.00195 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47382 * 179.97438 * 8 7 6 10 10 C 1.38280 * 119.97205 * 270.02476 * 9 8 7 11 11 C 1.38250 * 120.10833 * 180.02562 * 10 9 8 12 12 C 1.38159 * 120.05742 * 359.68104 * 11 10 9 13 13 C 1.38710 * 119.94311 * 0.57011 * 12 11 10 14 14 O 1.35900 * 120.05544 * 179.72143 * 13 12 11 15 15 C 1.42898 * 117.00172 * 359.72769 * 14 13 12 16 16 C 1.52997 * 109.47319 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46616 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47104 * 119.99966 * 21 19 17 24 24 H 1.48489 * 109.47200 * 240.00246 * 21 19 17 25 25 C 1.38129 * 119.97079 * 90.00085 * 9 8 7 26 26 H 1.08999 * 109.47171 * 240.00057 * 1 2 3 27 27 H 1.09006 * 109.46877 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47221 * 119.99543 * 1 2 3 29 29 H 1.09001 * 109.47383 * 269.99943 * 3 2 1 30 30 H 1.09004 * 109.46763 * 30.00173 * 3 2 1 31 31 H 1.09004 * 109.47154 * 149.99986 * 3 2 1 32 32 H 1.07997 * 119.99952 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47520 * 5.00424 * 5 4 2 34 34 H 1.08996 * 109.47045 * 244.99493 * 5 4 2 35 35 H 1.08996 * 109.47046 * 59.99370 * 6 5 4 36 36 H 1.09006 * 109.46798 * 299.99638 * 6 5 4 37 37 H 1.00901 * 111.00271 * 303.95429 * 7 6 5 38 38 H 1.09005 * 109.46944 * 59.99947 * 8 7 6 39 39 H 1.09002 * 109.47398 * 300.00389 * 8 7 6 40 40 H 1.08000 * 119.95034 * 0.02562 * 10 9 8 41 41 H 1.08006 * 119.97154 * 179.97438 * 11 10 9 42 42 H 1.08006 * 120.03137 * 180.29323 * 12 11 10 43 43 H 1.09002 * 109.47259 * 300.00149 * 15 14 13 44 44 H 1.09001 * 109.47074 * 60.00171 * 15 14 13 45 45 H 1.09002 * 109.47153 * 300.00307 * 16 15 14 46 46 H 1.08998 * 109.47533 * 59.99936 * 16 15 14 47 47 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 48 48 H 1.07998 * 120.02418 * 0.02613 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4084 -2.4396 -0.0017 6 6 1.8704 -3.2942 -1.1837 7 7 1.1363 -4.5666 -1.1846 8 6 1.5542 -5.4149 -2.3087 9 6 0.7819 -6.7085 -2.2762 10 6 1.2780 -7.7918 -1.5746 11 6 0.5720 -8.9801 -1.5433 12 6 -0.6345 -9.0858 -2.2080 13 6 -1.1318 -8.0022 -2.9169 14 8 -2.3157 -8.1054 -3.5762 15 6 -2.9924 -9.3618 -3.5015 16 6 -4.2965 -9.2869 -4.2981 17 6 -5.0104 -10.6116 -4.2189 18 1 -4.5776 -11.4255 -3.6563 19 6 -6.2168 -10.7843 -4.8639 20 7 -6.7441 -9.7930 -5.5486 21 14 -7.1015 -12.4266 -4.7663 22 1 -6.3045 -13.3698 -3.9414 23 1 -8.4367 -12.2335 -4.1457 24 1 -7.2667 -12.9818 -6.1335 25 6 -0.4213 -6.8108 -2.9470 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5137 -0.8900 29 1 2.4423 1.6197 -1.0277 30 1 1.6714 2.0647 0.5139 31 1 3.2130 1.1747 0.5139 32 1 3.2420 -1.1346 -0.0009 33 1 0.3402 -2.2423 -0.0916 34 1 1.6025 -2.9721 0.9294 35 1 2.9386 -3.4915 -1.0939 36 1 1.6763 -2.7617 -2.1149 37 1 1.2484 -5.0494 -0.3057 38 1 2.6204 -5.6266 -2.2273 39 1 1.3573 -4.8971 -3.2474 40 1 2.2185 -7.7097 -1.0501 41 1 0.9618 -9.8250 -0.9949 42 1 -1.1880 -10.0128 -2.1794 43 1 -2.3560 -10.1426 -3.9182 44 1 -3.2161 -9.5927 -2.4600 45 1 -4.9326 -8.5061 -3.8811 46 1 -4.0733 -9.0557 -5.3397 47 1 -7.5930 -9.9143 -6.0021 48 1 -0.8082 -5.9644 -3.4948 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359699817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:41 Heat of formation + Delta-G solvation = -26.753467 kcal Electronic energy + Delta-G solvation = -22879.978643 eV Core-core repulsion = 19513.269519 eV Total energy + Delta-G solvation = -3366.709124 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 6.36 seconds Orbital eigenvalues (eV) -39.80326 -38.00118 -37.30556 -35.73159 -33.37304 -32.27237 -30.84800 -30.07333 -29.09571 -28.12155 -26.55248 -25.10251 -24.21785 -22.34887 -22.04818 -21.59326 -20.13424 -18.20833 -17.60270 -16.44065 -16.17046 -15.63874 -15.54905 -15.38202 -15.19303 -14.98282 -14.63171 -14.44663 -14.14194 -13.90342 -13.70963 -13.09674 -12.85598 -12.73652 -12.61849 -12.33276 -12.30805 -12.16609 -11.95201 -11.83554 -11.51760 -11.38212 -11.25579 -11.15754 -11.01517 -10.88183 -10.67774 -10.42236 -9.84909 -9.64771 -9.27579 -9.00752 -8.78522 -8.57026 -8.44394 -7.82475 -6.09715 -4.14268 1.45814 1.69211 1.85134 3.27000 3.34000 3.37655 3.76769 3.86698 4.19782 4.41480 4.57051 4.64207 4.75966 4.86843 4.91531 5.00660 5.06686 5.17072 5.19369 5.23750 5.26755 5.29346 5.36351 5.44625 5.45665 5.48428 5.52377 5.56060 5.70959 5.72201 5.76620 5.86864 5.90066 6.05106 6.08085 6.20852 6.37820 6.56059 6.58897 6.59790 6.69070 6.74116 6.76618 7.01115 7.16128 7.52358 7.65442 7.82683 8.08473 8.24893 8.91577 9.50044 11.01891 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018758 B = 0.001957 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.335164 B =14300.596556 C =15467.817924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.131 4.131 3 C -0.117 4.117 4 C -0.167 4.167 5 C -0.093 4.093 6 C 0.065 3.935 7 N -0.685 5.685 8 C 0.103 3.897 9 C -0.052 4.052 10 C -0.167 4.167 11 C -0.081 4.081 12 C -0.211 4.211 13 C 0.145 3.855 14 O -0.315 6.315 15 C 0.065 3.935 16 C 0.024 3.976 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.138 4.138 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.342 0.658 38 H 0.038 0.962 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.129 0.871 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.263 0.737 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.843 15.770 11.576 28.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.131 4.131 3 C -0.174 4.174 4 C -0.185 4.185 5 C -0.131 4.131 6 C -0.064 4.064 7 N -0.316 5.316 8 C -0.025 4.025 9 C -0.052 4.052 10 C -0.186 4.186 11 C -0.099 4.099 12 C -0.230 4.230 13 C 0.098 3.902 14 O -0.228 6.228 15 C -0.009 4.009 16 C -0.013 4.013 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.158 4.158 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.160 0.840 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.147 0.853 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.072 0.928 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 20.027 16.224 11.000 28.023 hybrid contribution 0.398 -1.466 0.415 1.575 sum 20.424 14.757 11.415 27.663 Atomic orbital electron populations 1.20872 0.92190 1.02198 1.02424 1.21665 0.96001 0.94977 1.00448 1.20854 0.99558 0.95020 1.01988 1.22552 0.99193 0.93673 1.03132 1.20709 1.00973 0.93505 0.97894 1.21894 0.94926 0.90357 0.99248 1.60456 1.59622 1.05195 1.06317 1.20827 0.95655 0.90642 0.95406 1.19384 0.94492 0.94409 0.96944 1.20763 1.00974 0.93599 1.03241 1.20839 0.94011 0.97285 0.97755 1.21392 0.98946 0.99496 1.03158 1.19205 0.86379 0.93705 0.90954 1.86178 1.30503 1.38606 1.67543 1.23323 0.95224 0.81505 1.00821 1.19132 0.88471 0.98099 0.95565 1.21015 1.05389 0.97369 1.32659 0.92315 1.24996 0.97198 0.97022 0.95009 1.69991 1.18790 1.31310 1.32628 0.86429 0.79561 0.83499 0.77885 1.19649 1.20840 1.20843 1.20265 0.95048 0.96447 1.04007 0.91449 0.92282 0.91121 0.91525 0.91929 0.92082 0.87621 0.89940 0.91358 0.95425 0.90884 0.83965 0.94385 0.90051 0.86835 0.86250 0.85274 0.93168 0.93148 0.95356 0.95381 0.92767 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 8.53 36.01 0.31 -0.54 16 2 C -0.13 -0.96 6.05 -101.07 -0.61 -1.57 16 3 C -0.12 -0.69 9.97 36.00 0.36 -0.33 16 4 C -0.17 -1.23 9.11 -36.03 -0.33 -1.56 16 5 C -0.09 -0.72 5.72 -27.88 -0.16 -0.88 16 6 C 0.06 0.53 5.67 -3.82 -0.02 0.51 16 7 N -0.68 -6.72 6.49 -115.06 -0.75 -7.47 16 8 C 0.10 1.06 5.81 -4.98 -0.03 1.03 16 9 C -0.05 -0.66 5.39 -104.65 -0.56 -1.23 16 10 C -0.17 -2.02 9.70 -39.56 -0.38 -2.41 16 11 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 16 12 C -0.21 -3.35 9.04 -39.44 -0.36 -3.71 16 13 C 0.14 2.58 6.69 -39.22 -0.26 2.32 16 14 O -0.32 -6.64 10.14 -19.43 -0.20 -6.83 16 15 C 0.07 1.42 4.68 37.16 0.17 1.60 16 16 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 17 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 21 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.14 -2.16 9.64 -39.43 -0.38 -2.54 16 26 H 0.07 0.47 7.85 -51.93 -0.41 0.06 16 27 H 0.06 0.36 7.94 -51.93 -0.41 -0.05 16 28 H 0.07 0.53 7.66 -51.93 -0.40 0.13 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.33 8.05 -51.93 -0.42 -0.09 16 31 H 0.06 0.32 8.06 -51.93 -0.42 -0.10 16 32 H 0.11 0.71 8.04 -52.49 -0.42 0.28 16 33 H 0.08 0.71 5.80 -51.93 -0.30 0.41 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.34 3.14 8.72 -39.29 -0.34 2.80 16 38 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 39 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 40 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 42 H 0.13 2.02 6.30 -52.48 -0.33 1.69 16 43 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 44 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 395.69 15.07 5.96 5.96 Total: -1.00 -30.31 395.69 -10.91 -41.22 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -8.43 Total: 0.39 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -3.21 Total: -23.75 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: -0.01 Total: -33.32 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.20 Total: -6.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.31 -10.91 -41.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359699817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.464 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.36 seconds