Wall clock time and date at job start Tue Mar 31 2020 07:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50695 * 120.00257 * 2 1 4 4 C 1.31004 * 119.99875 * 180.02562 * 2 1 3 5 5 C 1.50704 * 119.99695 * 0.02562 * 4 2 1 6 6 C 1.53006 * 109.46894 * 125.00128 * 5 4 2 7 7 N 1.46900 * 109.47078 * 179.97438 * 6 5 4 8 8 C 1.46896 * 111.00195 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47382 * 179.97438 * 8 7 6 10 10 C 1.38280 * 119.97205 * 270.02476 * 9 8 7 11 11 C 1.38250 * 120.10833 * 180.02562 * 10 9 8 12 12 C 1.38159 * 120.05742 * 359.68104 * 11 10 9 13 13 C 1.38710 * 119.94311 * 0.57011 * 12 11 10 14 14 O 1.35900 * 120.05544 * 179.72143 * 13 12 11 15 15 C 1.42898 * 117.00172 * 359.72769 * 14 13 12 16 16 C 1.52997 * 109.47319 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46616 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47104 * 119.99966 * 21 19 17 24 24 H 1.48489 * 109.47200 * 240.00246 * 21 19 17 25 25 C 1.38129 * 119.97079 * 90.00085 * 9 8 7 26 26 H 1.08999 * 109.47171 * 240.00057 * 1 2 3 27 27 H 1.09006 * 109.46877 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47221 * 119.99543 * 1 2 3 29 29 H 1.09001 * 109.47383 * 269.99943 * 3 2 1 30 30 H 1.09004 * 109.46763 * 30.00173 * 3 2 1 31 31 H 1.09004 * 109.47154 * 149.99986 * 3 2 1 32 32 H 1.07997 * 119.99952 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47520 * 5.00424 * 5 4 2 34 34 H 1.08996 * 109.47045 * 244.99493 * 5 4 2 35 35 H 1.08996 * 109.47046 * 59.99370 * 6 5 4 36 36 H 1.09006 * 109.46798 * 299.99638 * 6 5 4 37 37 H 1.00901 * 111.00271 * 303.95429 * 7 6 5 38 38 H 1.09005 * 109.46944 * 59.99947 * 8 7 6 39 39 H 1.09002 * 109.47398 * 300.00389 * 8 7 6 40 40 H 1.08000 * 119.95034 * 0.02562 * 10 9 8 41 41 H 1.08006 * 119.97154 * 179.97438 * 11 10 9 42 42 H 1.08006 * 120.03137 * 180.29323 * 12 11 10 43 43 H 1.09002 * 109.47259 * 300.00149 * 15 14 13 44 44 H 1.09001 * 109.47074 * 60.00171 * 15 14 13 45 45 H 1.09002 * 109.47153 * 300.00307 * 16 15 14 46 46 H 1.08998 * 109.47533 * 59.99936 * 16 15 14 47 47 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 48 48 H 1.07998 * 120.02418 * 0.02613 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4084 -2.4396 -0.0017 6 6 1.8704 -3.2942 -1.1837 7 7 1.1363 -4.5666 -1.1846 8 6 1.5542 -5.4149 -2.3087 9 6 0.7819 -6.7085 -2.2762 10 6 1.2780 -7.7918 -1.5746 11 6 0.5720 -8.9801 -1.5433 12 6 -0.6345 -9.0858 -2.2080 13 6 -1.1318 -8.0022 -2.9169 14 8 -2.3157 -8.1054 -3.5762 15 6 -2.9924 -9.3618 -3.5015 16 6 -4.2965 -9.2869 -4.2981 17 6 -5.0104 -10.6116 -4.2189 18 1 -4.5776 -11.4255 -3.6563 19 6 -6.2168 -10.7843 -4.8639 20 7 -6.7441 -9.7930 -5.5486 21 14 -7.1015 -12.4266 -4.7663 22 1 -6.3045 -13.3698 -3.9414 23 1 -8.4367 -12.2335 -4.1457 24 1 -7.2667 -12.9818 -6.1335 25 6 -0.4213 -6.8108 -2.9470 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5137 -0.8900 29 1 2.4423 1.6197 -1.0277 30 1 1.6714 2.0647 0.5139 31 1 3.2130 1.1747 0.5139 32 1 3.2420 -1.1346 -0.0009 33 1 0.3402 -2.2423 -0.0916 34 1 1.6025 -2.9721 0.9294 35 1 2.9386 -3.4915 -1.0939 36 1 1.6763 -2.7617 -2.1149 37 1 1.2484 -5.0494 -0.3057 38 1 2.6204 -5.6266 -2.2273 39 1 1.3573 -4.8971 -3.2474 40 1 2.2185 -7.7097 -1.0501 41 1 0.9618 -9.8250 -0.9949 42 1 -1.1880 -10.0128 -2.1794 43 1 -2.3560 -10.1426 -3.9182 44 1 -3.2161 -9.5927 -2.4600 45 1 -4.9326 -8.5061 -3.8811 46 1 -4.0733 -9.0557 -5.3397 47 1 -7.5930 -9.9143 -6.0021 48 1 -0.8082 -5.9644 -3.4948 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359699817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:36 Heat of formation + Delta-G solvation = -42.766299 kcal Electronic energy + Delta-G solvation = -22880.673012 eV Core-core repulsion = 19513.269519 eV Total energy + Delta-G solvation = -3367.403492 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.02 seconds Orbital eigenvalues (eV) -41.07769 -39.02528 -38.18329 -36.54057 -35.46385 -33.11844 -32.58194 -31.09181 -30.41754 -28.65056 -27.40997 -26.86863 -25.16210 -23.53132 -23.25885 -22.70821 -21.52105 -19.12838 -18.74442 -18.15209 -17.20995 -16.94371 -16.89774 -16.70503 -16.41015 -15.98124 -15.72730 -15.23026 -14.89625 -14.65534 -14.57750 -14.34520 -14.34399 -14.19419 -13.78792 -13.39002 -13.25143 -13.04330 -12.87665 -12.71018 -12.67925 -12.59256 -12.52724 -12.43034 -12.35997 -11.95930 -11.75506 -11.62641 -11.57580 -11.54280 -11.36252 -10.63589 -9.84033 -9.55727 -9.35879 -9.08157 -8.27375 -6.41319 0.34717 0.53813 1.29119 1.40680 1.41867 1.55389 2.27158 2.51351 2.76184 3.07009 3.38054 3.83345 3.92363 4.01260 4.11284 4.14403 4.21347 4.25562 4.26031 4.26621 4.38069 4.43317 4.52452 4.56114 4.66505 4.68091 4.70882 4.72787 4.82143 4.86352 4.92401 4.97059 5.09427 5.11119 5.14760 5.15383 5.30984 5.31481 5.44722 5.45604 5.52540 5.61226 5.68317 5.82748 5.89531 6.02134 6.06932 6.10320 6.46512 6.57994 6.73684 7.28941 8.86034 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018758 B = 0.001957 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.335164 B =14300.596556 C =15467.817924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.140 4.140 3 C -0.117 4.117 4 C -0.172 4.172 5 C -0.089 4.089 6 C 0.070 3.930 7 N -0.698 5.698 8 C 0.107 3.893 9 C -0.046 4.046 10 C -0.152 4.152 11 C -0.077 4.077 12 C -0.223 4.223 13 C 0.105 3.895 14 O -0.343 6.343 15 C 0.085 3.915 16 C 0.027 3.973 17 C -0.546 4.546 18 H 0.071 0.929 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.978 3.022 22 H -0.257 1.257 23 H -0.277 1.277 24 H -0.276 1.276 25 C -0.153 4.153 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.347 0.653 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.126 0.874 43 H 0.060 0.940 44 H 0.059 0.941 45 H -0.002 1.002 46 H -0.002 1.002 47 H 0.267 0.733 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.187 14.884 13.318 30.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.140 4.140 3 C -0.174 4.174 4 C -0.191 4.191 5 C -0.127 4.127 6 C -0.058 4.058 7 N -0.330 5.330 8 C -0.021 4.021 9 C -0.046 4.046 10 C -0.170 4.170 11 C -0.095 4.095 12 C -0.242 4.242 13 C 0.059 3.941 14 O -0.258 6.258 15 C 0.011 3.989 16 C -0.010 4.010 17 C -0.584 4.584 18 H 0.089 0.911 19 C -0.198 4.198 20 N -0.570 5.570 21 Si 0.801 3.199 22 H -0.181 1.181 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.172 4.172 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.166 0.834 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.169 0.831 41 H 0.170 0.830 42 H 0.144 0.856 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.016 0.984 46 H 0.017 0.983 47 H 0.076 0.924 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 22.401 15.349 12.758 30.002 hybrid contribution -0.210 -1.069 -0.083 1.092 sum 22.191 14.281 12.675 29.275 Atomic orbital electron populations 1.20873 0.92420 1.02539 1.01923 1.21884 0.96122 0.95763 1.00261 1.20877 0.99770 0.94372 1.02383 1.22624 0.99654 0.93422 1.03356 1.20650 1.00254 0.93806 0.97966 1.21849 0.95457 0.89530 0.98998 1.60402 1.60464 1.05700 1.06400 1.20799 0.96383 0.89383 0.95527 1.19687 0.93275 0.96021 0.95650 1.21215 1.01734 0.92451 1.01644 1.21229 0.92684 0.98812 0.96801 1.21506 1.00284 0.98736 1.03648 1.19534 0.85969 0.95590 0.92963 1.86085 1.32531 1.37916 1.69247 1.22846 0.93343 0.82445 1.00260 1.18977 0.90628 0.97017 0.94386 1.21432 1.05997 0.98047 1.32924 0.91068 1.26066 0.98092 1.01338 0.94283 1.70136 1.19426 1.33930 1.33532 0.85207 0.78136 0.78279 0.78251 1.18084 1.20220 1.20191 1.20402 0.96277 0.95594 1.04952 0.91593 0.91534 0.92012 0.91193 0.91393 0.91414 0.86686 0.91220 0.90829 0.94067 0.91725 0.83392 0.92020 0.90504 0.83057 0.83034 0.85579 0.92200 0.92288 0.98403 0.98339 0.92434 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 8.53 71.24 0.61 -1.06 16 2 C -0.14 -1.91 6.05 -16.49 -0.10 -2.01 16 3 C -0.12 -1.21 9.97 71.23 0.71 -0.50 16 4 C -0.17 -2.31 9.11 25.64 0.23 -2.08 16 5 C -0.09 -1.28 5.72 29.85 0.17 -1.11 16 6 C 0.07 1.04 5.67 86.31 0.49 1.53 16 7 N -0.70 -12.42 6.49 -517.93 -3.36 -15.78 16 8 C 0.11 1.96 5.81 85.56 0.50 2.46 16 9 C -0.05 -1.09 5.39 -19.88 -0.11 -1.20 16 10 C -0.15 -3.14 9.70 22.28 0.22 -2.92 16 11 C -0.08 -1.81 10.04 22.25 0.22 -1.59 16 12 C -0.22 -6.93 9.04 22.36 0.20 -6.73 16 13 C 0.10 3.83 6.69 22.50 0.15 3.98 16 14 O -0.34 -15.26 10.14 -92.43 -0.94 -16.20 16 15 C 0.09 3.87 4.68 71.98 0.34 4.20 16 16 C 0.03 1.52 5.34 29.85 0.16 1.68 16 17 C -0.55 -31.34 9.11 25.60 0.23 -31.10 16 18 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 19 C 0.00 0.04 5.46 84.65 0.46 0.50 16 20 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 21 Si 0.98 43.90 29.54 68.60 2.03 45.93 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 25 C -0.15 -4.85 9.64 22.37 0.22 -4.63 16 26 H 0.07 0.91 7.85 -2.39 -0.02 0.89 16 27 H 0.07 0.79 7.94 -2.38 -0.02 0.77 16 28 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.62 8.05 -2.38 -0.02 0.60 16 31 H 0.07 0.60 8.06 -2.39 -0.02 0.58 16 32 H 0.12 1.32 8.04 -2.91 -0.02 1.29 16 33 H 0.07 1.17 5.80 -2.39 -0.01 1.16 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 37 H 0.35 5.51 8.72 -89.69 -0.78 4.73 16 38 H 0.06 0.87 8.08 -2.38 -0.02 0.85 16 39 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 40 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.13 3.90 6.30 -2.91 -0.02 3.88 16 43 H 0.06 2.54 7.67 -2.39 -0.02 2.53 16 44 H 0.06 2.52 7.65 -2.39 -0.02 2.50 16 45 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 47 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 48 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -67.71 395.69 2.85 -64.86 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.13 Total: 18.80 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 4.70 Total: -40.57 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -3.08 Total: -72.82 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.94 Total: -16.20 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -67.71 2.85 -64.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359699817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.094 kcal (2) G-P(sol) polarization free energy of solvation -67.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.02 seconds