Wall clock time and date at job start Tue Mar 31 2020 10:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.50706 * 109.47103 * 185.00428 * 3 2 1 6 6 O 1.21279 * 119.99507 * 240.00171 * 5 3 2 7 7 N 1.34774 * 120.00020 * 59.99861 * 5 3 2 8 8 C 1.46496 * 119.99544 * 180.02562 * 7 5 3 9 9 C 1.53005 * 109.47059 * 180.02562 * 8 7 5 10 10 C 1.53008 * 109.46851 * 300.00042 * 9 8 7 11 11 C 1.53002 * 109.47274 * 59.99575 * 9 8 7 12 12 C 1.52996 * 109.47571 * 180.02562 * 9 8 7 13 13 C 1.50695 * 109.47381 * 180.02562 * 12 9 8 14 14 H 1.07998 * 120.00167 * 359.97438 * 13 12 9 15 15 C 1.37876 * 120.00453 * 179.97438 * 13 12 9 16 16 N 1.31518 * 119.99589 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00712 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47021 * 59.99514 * 17 15 13 19 19 H 1.48496 * 109.47490 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46959 * 300.00409 * 17 15 13 21 21 C 1.50698 * 109.47342 * 65.00094 * 3 2 1 22 22 C 1.38238 * 119.99510 * 59.72627 * 21 3 2 23 23 C 1.38236 * 119.99716 * 179.79025 * 22 21 3 24 24 C 1.38235 * 119.99863 * 0.44186 * 23 22 21 25 25 C 1.38235 * 120.00068 * 359.80660 * 24 23 22 26 26 C 1.38228 * 120.00139 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 29 29 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 30 30 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 31 31 H 1.08993 * 109.47618 * 120.00236 * 2 1 3 32 32 H 0.96994 * 119.99756 * 0.02562 * 7 5 3 33 33 H 1.08996 * 109.47366 * 299.99598 * 8 7 5 34 34 H 1.08992 * 109.47635 * 60.00246 * 8 7 5 35 35 H 1.09002 * 109.47288 * 59.99661 * 10 9 8 36 36 H 1.09004 * 109.46943 * 180.02562 * 10 9 8 37 37 H 1.09001 * 109.46630 * 299.99898 * 10 9 8 38 38 H 1.09004 * 109.46930 * 60.00379 * 11 9 8 39 39 H 1.09000 * 109.47312 * 180.02562 * 11 9 8 40 40 H 1.09002 * 109.47067 * 300.00462 * 11 9 8 41 41 H 1.09004 * 109.46785 * 299.99714 * 12 9 8 42 42 H 1.09001 * 109.47364 * 59.99212 * 12 9 8 43 43 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 44 44 H 1.07998 * 120.00214 * 359.97438 * 22 21 3 45 45 H 1.08004 * 120.00154 * 180.27420 * 23 22 21 46 46 H 1.08007 * 119.99982 * 179.83552 * 24 23 22 47 47 H 1.08005 * 119.99969 * 180.02562 * 25 24 23 48 48 H 1.08003 * 120.00160 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 8 4.2216 1.9435 0.7476 7 7 4.1297 0.8912 -1.2033 8 6 5.5897 0.8925 -1.3234 9 6 5.9945 0.2091 -2.6311 10 6 5.4840 -1.2333 -2.6321 11 6 5.3848 0.9667 -3.8124 12 6 7.5193 0.2099 -2.7564 13 6 7.9179 -0.4626 -4.0447 14 1 7.1596 -0.8520 -4.7077 15 6 9.2508 -0.5808 -4.3771 16 7 10.1743 -0.1061 -3.5700 17 14 9.7450 -1.4150 -5.9737 18 1 9.1531 -0.6797 -7.1202 19 1 11.2249 -1.4141 -6.0953 20 1 9.2495 -2.8149 -5.9747 21 6 1.6413 2.1163 1.2877 22 6 2.0722 1.6048 2.4975 23 6 1.7101 2.2253 3.6785 24 6 0.9097 3.3520 3.6501 25 6 0.4747 3.8604 2.4405 26 6 0.8404 3.2426 1.2593 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.5860 0.4922 -1.9004 33 1 5.9534 1.9200 -1.3232 34 1 6.0241 0.3532 -0.4817 35 1 4.3976 -1.2342 -2.5426 36 1 5.7727 -1.7202 -3.5636 37 1 5.9183 -1.7729 -1.7905 38 1 5.7485 1.9942 -3.8118 39 1 5.6728 0.4796 -4.7440 40 1 4.2985 0.9657 -3.7230 41 1 7.8834 1.2374 -2.7555 42 1 7.9533 -0.3300 -1.9148 43 1 11.1120 -0.1889 -3.8040 44 1 2.6941 0.7221 2.5199 45 1 2.0504 1.8283 4.6235 46 1 0.6246 3.8353 4.5730 47 1 -0.1504 4.7410 2.4183 48 1 0.5002 3.6396 0.3143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359759612.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:23 Heat of formation + Delta-G solvation = -44.687860 kcal Electronic energy + Delta-G solvation = -24896.808141 eV Core-core repulsion = 21529.321323 eV Total energy + Delta-G solvation = -3367.486818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39713 -38.80237 -37.08615 -35.20865 -33.55388 -32.05797 -31.01178 -30.74162 -28.01481 -27.02219 -26.52839 -25.71111 -23.10956 -22.97228 -22.37254 -21.32370 -19.80321 -18.32448 -17.04040 -16.86538 -16.32905 -15.78298 -15.43609 -14.95824 -14.70774 -14.50317 -14.41959 -14.01944 -13.65570 -13.39904 -13.17572 -13.12298 -12.76099 -12.66415 -12.55774 -12.15743 -12.07143 -12.02580 -11.65797 -11.33007 -11.16921 -11.01731 -10.91408 -10.88450 -10.87997 -10.64160 -10.41004 -10.27773 -9.88564 -9.68792 -9.18003 -8.95598 -8.92771 -8.75247 -8.70401 -8.36497 -6.00602 -4.02108 1.27544 1.37582 2.81691 3.31158 3.36584 3.36913 3.40556 3.82088 4.39807 4.44332 4.59251 4.80038 4.89243 4.92476 5.02948 5.07461 5.19841 5.28997 5.34724 5.43579 5.48646 5.53596 5.58446 5.62044 5.71812 5.74287 5.85411 5.93218 5.97340 6.03192 6.15527 6.21325 6.28502 6.38144 6.38494 6.45593 6.55897 6.56613 6.61374 6.76372 6.93739 7.04927 7.06029 7.11752 7.62898 7.75414 7.75803 7.97950 8.39034 8.45437 9.02521 9.60990 11.10844 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.029316 B = 0.002752 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.870500 B =10171.987387 C =10600.838021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.071 4.071 4 H 0.102 0.898 5 C 0.511 3.489 6 O -0.536 6.536 7 N -0.720 5.720 8 C 0.128 3.872 9 C -0.072 4.072 10 C -0.127 4.127 11 C -0.127 4.127 12 C 0.036 3.964 13 C -0.512 4.512 14 H 0.059 0.941 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.058 4.058 22 C -0.084 4.084 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.114 4.114 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.397 0.603 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.028 0.972 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.028 0.972 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.261 0.739 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.113 2.821 9.014 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.092 4.092 4 H 0.120 0.880 5 C 0.296 3.704 6 O -0.412 6.412 7 N -0.372 5.372 8 C 0.006 3.994 9 C -0.073 4.073 10 C -0.184 4.184 11 C -0.184 4.184 12 C -0.001 4.001 13 C -0.550 4.550 14 H 0.077 0.923 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.058 4.058 22 C -0.102 4.102 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.132 4.132 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.233 0.767 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.070 0.930 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.398 3.198 9.655 23.692 hybrid contribution 0.286 -0.547 -1.236 1.382 sum -21.111 2.650 8.419 22.882 Atomic orbital electron populations 1.21769 0.94834 1.01898 1.02216 1.21546 0.96793 0.93549 1.03160 1.20423 0.93259 0.98238 0.97314 0.88008 1.20388 0.89672 0.78300 0.82086 1.90719 1.65342 1.45050 1.40105 1.46200 1.08929 1.59556 1.22537 1.21617 0.77917 1.01036 0.98868 1.20902 1.00459 0.94171 0.91732 1.21761 0.97350 0.96529 1.02743 1.21761 0.97061 1.00166 0.99424 1.19081 0.86270 0.97464 0.97290 1.21141 0.91544 1.37361 1.04971 0.92321 1.25015 0.96874 0.95812 0.96789 1.69956 1.00497 1.46204 1.36734 0.86709 0.77380 0.80045 0.84148 1.20326 1.21393 1.20331 1.19266 0.97397 0.95574 0.93580 1.20918 0.97672 0.99797 0.91790 1.21109 0.98495 0.96327 0.98088 1.21108 0.98548 0.96698 0.97802 1.21041 1.00750 0.99944 0.92537 1.20987 0.98565 0.95361 0.98275 0.92398 0.92303 0.92527 0.90960 0.91089 0.76721 0.91901 0.91874 0.95274 0.91443 0.93385 0.93383 0.91436 0.95278 0.96379 0.96374 0.92970 0.86352 0.86260 0.86414 0.86301 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.73 37.16 0.36 -0.76 16 2 C -0.11 -1.00 5.24 -26.73 -0.14 -1.14 16 3 C -0.07 -0.76 2.38 -92.92 -0.22 -0.99 16 4 H 0.10 0.92 7.88 -51.93 -0.41 0.51 16 5 C 0.51 7.45 7.03 -10.98 -0.08 7.38 16 6 O -0.54 -10.02 15.13 5.56 0.08 -9.94 16 7 N -0.72 -10.17 4.82 -60.30 -0.29 -10.46 16 8 C 0.13 2.25 4.56 -4.04 -0.02 2.24 16 9 C -0.07 -1.35 0.54 -154.50 -0.08 -1.43 16 10 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 11 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 12 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 13 C -0.51 -13.51 7.65 -34.44 -0.26 -13.77 16 14 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 17 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.06 -0.67 3.37 -104.62 -0.35 -1.03 16 22 C -0.08 -1.02 7.88 -39.58 -0.31 -1.33 16 23 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 24 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 25 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 26 C -0.11 -1.19 9.67 -39.59 -0.38 -1.58 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.48 7.38 -51.93 -0.38 0.09 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.59 7.43 -51.93 -0.39 0.21 16 31 H 0.07 0.68 7.21 -51.93 -0.37 0.31 16 32 H 0.40 4.69 5.52 -40.82 -0.23 4.47 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 36 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 40 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.12 1.48 7.48 -52.49 -0.39 1.09 16 45 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 46 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 47 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 48 H 0.12 1.02 7.95 -52.48 -0.42 0.60 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -31.26 378.98 -9.15 -40.41 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.07 Total: 2.76 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -2.29 Total: -18.91 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.45 Total: -36.13 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.26 -9.15 -40.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359759612.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.281 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds