Wall clock time and date at job start Tue Mar 31 2020 10:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.50706 * 109.47103 * 185.00428 * 3 2 1 6 6 O 1.21279 * 119.99507 * 240.00171 * 5 3 2 7 7 N 1.34774 * 120.00020 * 59.99861 * 5 3 2 8 8 C 1.46496 * 119.99544 * 180.02562 * 7 5 3 9 9 C 1.53005 * 109.47059 * 180.02562 * 8 7 5 10 10 C 1.53008 * 109.46851 * 300.00042 * 9 8 7 11 11 C 1.53002 * 109.47274 * 59.99575 * 9 8 7 12 12 C 1.52996 * 109.47571 * 180.02562 * 9 8 7 13 13 C 1.50695 * 109.47381 * 180.02562 * 12 9 8 14 14 H 1.07998 * 120.00167 * 359.97438 * 13 12 9 15 15 C 1.37876 * 120.00453 * 179.97438 * 13 12 9 16 16 N 1.31518 * 119.99589 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00712 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47021 * 59.99514 * 17 15 13 19 19 H 1.48496 * 109.47490 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46959 * 300.00409 * 17 15 13 21 21 C 1.50698 * 109.47342 * 65.00094 * 3 2 1 22 22 C 1.38238 * 119.99510 * 59.72627 * 21 3 2 23 23 C 1.38236 * 119.99716 * 179.79025 * 22 21 3 24 24 C 1.38235 * 119.99863 * 0.44186 * 23 22 21 25 25 C 1.38235 * 120.00068 * 359.80660 * 24 23 22 26 26 C 1.38228 * 120.00139 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 29 29 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 30 30 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 31 31 H 1.08993 * 109.47618 * 120.00236 * 2 1 3 32 32 H 0.96994 * 119.99756 * 0.02562 * 7 5 3 33 33 H 1.08996 * 109.47366 * 299.99598 * 8 7 5 34 34 H 1.08992 * 109.47635 * 60.00246 * 8 7 5 35 35 H 1.09002 * 109.47288 * 59.99661 * 10 9 8 36 36 H 1.09004 * 109.46943 * 180.02562 * 10 9 8 37 37 H 1.09001 * 109.46630 * 299.99898 * 10 9 8 38 38 H 1.09004 * 109.46930 * 60.00379 * 11 9 8 39 39 H 1.09000 * 109.47312 * 180.02562 * 11 9 8 40 40 H 1.09002 * 109.47067 * 300.00462 * 11 9 8 41 41 H 1.09004 * 109.46785 * 299.99714 * 12 9 8 42 42 H 1.09001 * 109.47364 * 59.99212 * 12 9 8 43 43 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 44 44 H 1.07998 * 120.00214 * 359.97438 * 22 21 3 45 45 H 1.08004 * 120.00154 * 180.27420 * 23 22 21 46 46 H 1.08007 * 119.99982 * 179.83552 * 24 23 22 47 47 H 1.08005 * 119.99969 * 180.02562 * 25 24 23 48 48 H 1.08003 * 120.00160 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 8 4.2216 1.9435 0.7476 7 7 4.1297 0.8912 -1.2033 8 6 5.5897 0.8925 -1.3234 9 6 5.9945 0.2091 -2.6311 10 6 5.4840 -1.2333 -2.6321 11 6 5.3848 0.9667 -3.8124 12 6 7.5193 0.2099 -2.7564 13 6 7.9179 -0.4626 -4.0447 14 1 7.1596 -0.8520 -4.7077 15 6 9.2508 -0.5808 -4.3771 16 7 10.1743 -0.1061 -3.5700 17 14 9.7450 -1.4150 -5.9737 18 1 9.1531 -0.6797 -7.1202 19 1 11.2249 -1.4141 -6.0953 20 1 9.2495 -2.8149 -5.9747 21 6 1.6413 2.1163 1.2877 22 6 2.0722 1.6048 2.4975 23 6 1.7101 2.2253 3.6785 24 6 0.9097 3.3520 3.6501 25 6 0.4747 3.8604 2.4405 26 6 0.8404 3.2426 1.2593 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.5860 0.4922 -1.9004 33 1 5.9534 1.9200 -1.3232 34 1 6.0241 0.3532 -0.4817 35 1 4.3976 -1.2342 -2.5426 36 1 5.7727 -1.7202 -3.5636 37 1 5.9183 -1.7729 -1.7905 38 1 5.7485 1.9942 -3.8118 39 1 5.6728 0.4796 -4.7440 40 1 4.2985 0.9657 -3.7230 41 1 7.8834 1.2374 -2.7555 42 1 7.9533 -0.3300 -1.9148 43 1 11.1120 -0.1889 -3.8040 44 1 2.6941 0.7221 2.5199 45 1 2.0504 1.8283 4.6235 46 1 0.6246 3.8353 4.5730 47 1 -0.1504 4.7410 2.4183 48 1 0.5002 3.6396 0.3143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359759612.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:22 Heat of formation + Delta-G solvation = -61.391385 kcal Electronic energy + Delta-G solvation = -24897.532460 eV Core-core repulsion = 21529.321323 eV Total energy + Delta-G solvation = -3368.211137 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.44918 -39.83778 -38.54961 -36.07060 -35.19421 -33.85232 -31.78119 -31.48036 -29.35429 -28.64530 -27.95304 -27.01907 -24.82945 -23.85409 -23.12584 -22.39590 -20.88832 -19.80154 -18.38102 -18.01938 -17.86104 -16.86154 -16.55199 -16.43373 -15.99713 -15.68959 -15.27088 -15.11462 -15.01341 -14.70006 -14.37103 -14.20094 -13.98685 -13.92982 -13.76771 -13.40692 -13.23334 -12.89224 -12.82301 -12.74275 -12.57448 -12.37552 -12.32313 -12.22078 -12.01745 -12.00701 -11.68695 -11.58990 -11.52408 -11.11784 -10.89119 -10.68093 -10.50752 -10.04347 -9.73606 -9.57316 -8.13899 -6.21995 0.47297 0.57414 1.42593 1.44722 1.51955 1.66202 2.24423 2.45291 2.97687 3.20471 3.56723 3.76282 3.95784 4.05180 4.09058 4.11248 4.20946 4.23281 4.28584 4.33418 4.49810 4.59188 4.69351 4.69865 4.72576 4.76827 4.82346 4.92291 4.97527 5.08080 5.10974 5.13202 5.19828 5.20436 5.25381 5.40947 5.44002 5.47810 5.50627 5.54358 5.57871 5.61318 5.67032 5.74436 5.80678 5.89943 6.16772 6.30181 6.61760 6.93317 7.29988 7.45916 8.98552 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.029316 B = 0.002752 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.870500 B =10171.987387 C =10600.838021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.060 4.060 4 H 0.129 0.871 5 C 0.509 3.491 6 O -0.581 6.581 7 N -0.707 5.707 8 C 0.143 3.857 9 C -0.064 4.064 10 C -0.121 4.121 11 C -0.122 4.122 12 C 0.040 3.960 13 C -0.514 4.514 14 H 0.074 0.926 15 C -0.006 4.006 16 N -0.940 5.940 17 Si 0.959 3.041 18 H -0.266 1.266 19 H -0.292 1.292 20 H -0.266 1.266 21 C -0.073 4.073 22 C -0.107 4.107 23 C -0.137 4.137 24 C -0.129 4.129 25 C -0.128 4.128 26 C -0.121 4.121 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.413 0.587 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.056 0.944 40 H 0.072 0.928 41 H -0.016 1.016 42 H -0.016 1.016 43 H 0.259 0.741 44 H 0.103 0.897 45 H 0.129 0.871 46 H 0.141 0.859 47 H 0.145 0.855 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.440 2.621 7.500 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.081 4.081 4 H 0.146 0.854 5 C 0.297 3.703 6 O -0.461 6.461 7 N -0.360 5.360 8 C 0.018 3.982 9 C -0.064 4.064 10 C -0.178 4.178 11 C -0.179 4.179 12 C 0.002 3.998 13 C -0.552 4.552 14 H 0.092 0.908 15 C -0.203 4.203 16 N -0.581 5.581 17 Si 0.784 3.216 18 H -0.191 1.191 19 H -0.218 1.218 20 H -0.191 1.191 21 C -0.073 4.073 22 C -0.125 4.125 23 C -0.155 4.155 24 C -0.147 4.147 25 C -0.146 4.146 26 C -0.139 4.139 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.252 0.748 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.068 0.932 44 H 0.121 0.879 45 H 0.147 0.853 46 H 0.158 0.842 47 H 0.162 0.838 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -24.773 2.977 8.116 26.238 hybrid contribution 1.314 -0.434 -0.664 1.535 sum -23.459 2.543 7.452 24.745 Atomic orbital electron populations 1.21721 0.93356 1.02564 1.02482 1.21562 0.97972 0.92098 1.03165 1.20442 0.89773 0.99878 0.98022 0.85361 1.21145 0.91344 0.76856 0.80995 1.90705 1.66800 1.46932 1.41663 1.45963 1.07225 1.59622 1.23176 1.21172 0.80216 0.99278 0.97508 1.20700 0.96470 0.96138 0.93105 1.21697 1.00006 0.94512 1.01632 1.21698 0.99633 0.98847 0.97706 1.18968 0.90581 0.94605 0.95620 1.21566 0.91877 1.36318 1.05394 0.90807 1.25968 0.97164 0.96730 1.00423 1.70123 1.00752 1.48194 1.39033 0.85590 0.76667 0.79409 0.79927 1.19064 1.21793 1.19074 1.19433 0.98039 0.96335 0.93532 1.20975 0.98492 1.00041 0.92984 1.21346 0.98954 0.96964 0.98208 1.21438 0.97887 0.96218 0.99113 1.21423 1.00494 1.00490 0.92201 1.21301 0.98179 0.94806 0.99627 0.91566 0.93195 0.91059 0.89653 0.92427 0.74844 0.93968 0.93909 0.90930 0.92522 0.94580 0.94589 0.92504 0.90945 0.99796 0.99771 0.93192 0.87917 0.85295 0.84157 0.83750 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.73 71.98 0.70 -1.04 16 2 C -0.11 -1.71 5.24 30.59 0.16 -1.55 16 3 C -0.06 -1.17 2.38 -12.29 -0.03 -1.20 16 4 H 0.13 1.84 7.88 -2.39 -0.02 1.82 16 5 C 0.51 14.47 7.03 87.66 0.62 15.09 16 6 O -0.58 -22.28 15.13 -3.02 -0.05 -22.32 16 7 N -0.71 -18.90 4.82 -463.07 -2.23 -21.13 16 8 C 0.14 5.09 4.56 86.38 0.39 5.49 16 9 C -0.06 -2.37 0.54 -52.18 -0.03 -2.40 16 10 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 11 C -0.12 -3.98 8.05 71.98 0.58 -3.41 16 12 C 0.04 2.03 4.04 29.85 0.12 2.15 16 13 C -0.51 -27.42 7.65 25.60 0.20 -27.22 16 14 H 0.07 3.65 5.68 -2.91 -0.02 3.64 16 15 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 16 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 17 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 C -0.07 -1.62 3.37 -19.87 -0.07 -1.68 16 22 C -0.11 -2.64 7.88 22.27 0.18 -2.47 16 23 C -0.14 -2.96 10.05 22.27 0.22 -2.73 16 24 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 25 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 26 C -0.12 -2.27 9.67 22.27 0.22 -2.06 16 27 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.05 0.70 7.38 -2.39 -0.02 0.68 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 1.09 7.43 -2.39 -0.02 1.08 16 31 H 0.06 1.05 7.21 -2.39 -0.02 1.04 16 32 H 0.41 8.28 5.52 -92.71 -0.51 7.77 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 36 H 0.06 1.99 6.62 -2.39 -0.02 1.97 16 37 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.06 1.99 6.62 -2.39 -0.02 1.98 16 40 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 41 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 42 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 43 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.10 2.74 7.48 -2.91 -0.02 2.72 16 45 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 46 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 47 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 48 H 0.14 1.93 7.95 -2.91 -0.02 1.91 16 Total: -1.00 -71.49 378.98 5.19 -66.30 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.42 Total: 19.27 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 4.75 Total: -30.41 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.95 Total: -78.30 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.32 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -71.49 5.19 -66.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359759612.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.907 kcal (2) G-P(sol) polarization free energy of solvation -71.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds