Wall clock time and date at job start Tue Mar 31 2020 10:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47366 * 2 1 4 4 H 1.08996 * 109.47223 * 182.18960 * 3 2 1 5 5 N 1.46901 * 109.47092 * 62.18891 * 3 2 1 6 6 C 1.46901 * 111.00037 * 89.05987 * 5 3 2 7 7 C 1.50700 * 109.47086 * 174.96143 * 6 5 3 8 8 C 1.38328 * 119.96260 * 269.71794 * 7 6 5 9 9 C 1.38277 * 120.13587 * 179.76789 * 8 7 6 10 10 C 1.38127 * 120.07195 * 0.51193 * 9 8 7 11 11 C 1.38858 * 119.92367 * 359.74816 * 10 9 8 12 12 O 1.35754 * 120.06187 * 179.97438 * 11 10 9 13 13 C 1.34828 * 117.00541 * 6.01800 * 12 11 10 14 14 H 1.08003 * 119.99726 * 5.42404 * 13 12 11 15 15 C 1.38652 * 120.00478 * 185.42665 * 13 12 11 16 16 N 1.31551 * 120.00164 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99770 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.46725 * 90.00246 * 17 15 13 19 19 H 1.48499 * 109.46880 * 209.99863 * 17 15 13 20 20 H 1.48492 * 109.47047 * 330.00192 * 17 15 13 21 21 C 1.38075 * 119.96887 * 90.00155 * 7 6 5 22 22 C 1.53004 * 109.47459 * 302.19158 * 3 2 1 23 23 C 1.54264 * 110.02898 * 297.16526 * 22 3 2 24 24 C 1.54884 * 104.19680 * 217.10028 * 23 22 3 25 25 C 1.54896 * 102.74607 * 37.94447 * 24 23 22 26 26 C 1.53871 * 110.03295 * 179.97438 * 22 3 2 27 27 H 1.09002 * 109.47048 * 295.49071 * 1 2 3 28 28 H 1.08993 * 109.47070 * 175.49296 * 1 2 3 29 29 H 1.08998 * 109.46957 * 55.48829 * 1 2 3 30 30 H 1.09001 * 109.47043 * 120.00476 * 2 1 3 31 31 H 1.09001 * 109.46962 * 239.99822 * 2 1 3 32 32 H 1.00902 * 111.00174 * 325.10869 * 5 3 2 33 33 H 1.09001 * 109.47368 * 294.95781 * 6 5 3 34 34 H 1.08996 * 109.47012 * 54.95715 * 6 5 3 35 35 H 1.07997 * 119.93221 * 0.02562 * 8 7 6 36 36 H 1.07999 * 119.96779 * 180.26267 * 9 8 7 37 37 H 1.08000 * 120.03458 * 179.76957 * 10 9 8 38 38 H 0.96996 * 120.00303 * 180.02562 * 16 15 13 39 39 H 1.08004 * 120.03448 * 359.95316 * 21 7 6 40 40 H 1.09005 * 110.01574 * 58.60615 * 22 3 2 41 41 H 1.09001 * 110.48941 * 335.78494 * 23 22 3 42 42 H 1.09004 * 110.48662 * 98.42380 * 23 22 3 43 43 H 1.08993 * 110.76011 * 279.62998 * 24 23 22 44 44 H 1.08997 * 110.91671 * 156.32458 * 24 23 22 45 45 H 1.08994 * 110.48684 * 203.37925 * 25 24 23 46 46 H 1.08997 * 110.59666 * 80.78970 * 25 24 23 47 47 H 1.08992 * 110.03391 * 238.56483 * 26 22 3 48 48 H 1.08998 * 110.03482 * 0.02562 * 26 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1293 1.4426 -0.0393 5 7 1.5941 2.1195 1.2250 6 6 2.5674 1.9390 2.3104 7 6 2.1392 2.7466 3.5086 8 6 2.5751 4.0513 3.6538 9 6 2.1806 4.7972 4.7493 10 6 1.3581 4.2377 5.7076 11 6 0.9232 2.9265 5.5673 12 8 0.1152 2.3736 6.5077 13 6 -0.3297 3.1865 7.4871 14 1 -0.1131 4.2440 7.4511 15 6 -1.0651 2.6650 8.5405 16 7 -1.4995 3.4582 9.4958 17 14 -1.4402 0.8360 8.6024 18 1 -0.3571 0.1332 9.3363 19 1 -2.7327 0.6192 9.3006 20 1 -1.5287 0.3018 7.2197 21 6 1.3169 2.1816 4.4631 22 6 1.4856 2.1795 -1.2208 23 6 2.0042 1.5213 -2.5160 24 6 2.2413 2.7115 -3.4783 25 6 2.7990 3.8071 -2.5360 26 6 1.9905 3.6330 -1.2331 27 1 -0.3633 0.4423 0.9276 28 1 -0.3633 -1.0244 -0.0808 29 1 -0.3633 0.5822 -0.8468 30 1 1.8934 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 0.6788 1.7983 1.5030 33 1 2.6173 0.8845 2.5821 34 1 3.5493 2.2752 1.9776 35 1 3.2216 4.4897 2.9080 36 1 2.5191 5.8169 4.8579 37 1 1.0533 4.8196 6.5649 38 1 -2.0136 3.0933 10.2329 39 1 0.9800 1.1616 4.3510 40 1 0.3958 2.1633 -1.2032 41 1 2.9378 0.9913 -2.3273 42 1 1.2555 0.8430 -2.9254 43 1 1.3044 3.0333 -3.9329 44 1 2.9720 2.4527 -4.2446 45 1 2.6303 4.7969 -2.9599 46 1 3.8612 3.6486 -2.3500 47 1 1.1459 4.3218 -1.2227 48 1 2.6309 3.8132 -0.3697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382811007.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:03 Heat of formation + Delta-G solvation = -26.648645 kcal Electronic energy + Delta-G solvation = -24690.527171 eV Core-core repulsion = 21323.822592 eV Total energy + Delta-G solvation = -3366.704579 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.54820 -39.02675 -37.03436 -35.87923 -32.89369 -32.35098 -30.27499 -29.32806 -28.79454 -28.58249 -25.59264 -25.09185 -24.31260 -21.75057 -21.27994 -20.61981 -20.49195 -19.21644 -17.69687 -17.13000 -16.15650 -15.55367 -15.50221 -15.19211 -14.96603 -14.59994 -14.10541 -13.88301 -13.87321 -13.58894 -13.46125 -13.37097 -12.97872 -12.58203 -12.48544 -12.15740 -12.00097 -11.69885 -11.42587 -11.33892 -11.24168 -11.12595 -11.09738 -10.96684 -10.84549 -10.76961 -10.74178 -10.63297 -10.52560 -10.20163 -10.11760 -9.40080 -8.86223 -8.37128 -8.08814 -7.34252 -6.40137 -4.06876 2.05419 2.31441 3.21901 3.25553 3.40075 4.11198 4.24321 4.48918 4.53632 4.56669 4.74824 4.82479 4.89226 4.92386 4.96767 5.10799 5.24867 5.32887 5.38993 5.41763 5.45284 5.50367 5.53904 5.58019 5.64007 5.68998 5.72913 5.77698 5.80796 5.85077 5.87174 5.91965 5.98316 6.04473 6.12266 6.15956 6.23174 6.27815 6.33594 6.44506 6.55576 6.81196 7.10957 7.14048 7.27783 7.34692 7.48776 7.63241 7.82083 8.05941 8.95487 9.58617 10.67857 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021060 B = 0.003019 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.189880 B = 9273.700733 C =10150.105896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.155 4.155 3 C 0.093 3.907 4 H 0.074 0.926 5 N -0.677 5.677 6 C 0.106 3.894 7 C -0.046 4.046 8 C -0.180 4.180 9 C -0.079 4.079 10 C -0.218 4.218 11 C 0.158 3.842 12 O -0.220 6.220 13 C -0.388 4.388 14 H 0.105 0.895 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.905 3.095 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.260 1.260 21 C -0.185 4.185 22 C -0.080 4.080 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.108 4.108 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.345 0.655 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.279 0.721 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.795 -4.051 -22.694 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.194 4.194 3 C -0.017 4.017 4 H 0.092 0.908 5 N -0.309 5.309 6 C -0.022 4.022 7 C -0.047 4.047 8 C -0.199 4.199 9 C -0.097 4.097 10 C -0.238 4.238 11 C 0.106 3.894 12 O -0.126 6.126 13 C -0.464 4.464 14 H 0.123 0.877 15 C -0.140 4.140 16 N -0.519 5.519 17 Si 0.731 3.269 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.184 1.184 21 C -0.205 4.205 22 C -0.099 4.099 23 C -0.157 4.157 24 C -0.163 4.163 25 C -0.166 4.166 26 C -0.146 4.146 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.089 0.911 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.820 -3.652 -22.621 24.212 hybrid contribution -0.427 -1.505 0.605 1.677 sum 7.394 -5.157 -22.016 23.790 Atomic orbital electron populations 1.21845 0.95623 1.01652 1.02285 1.22196 0.96840 0.98263 1.02099 1.21708 0.99030 0.90513 0.90445 0.90791 1.60591 1.05805 1.60986 1.03480 1.20817 0.95586 0.96670 0.89144 1.19168 0.97061 0.94413 0.94037 1.20469 1.05655 0.94365 0.99452 1.20801 0.96506 0.98582 0.93817 1.21308 1.03878 0.96423 1.02165 1.19054 0.89493 0.91680 0.89137 1.83580 1.56336 1.38699 1.33948 1.20748 1.33223 0.92292 1.00099 0.87722 1.24455 0.95763 0.99931 0.93874 1.69643 1.35792 1.35863 1.10652 0.86188 0.77799 0.83657 0.79282 1.19965 1.20805 1.18425 1.20014 1.05180 1.00188 0.95101 1.21778 1.00406 0.94925 0.92769 1.22418 1.00752 0.97337 0.95144 1.22483 1.00579 0.95827 0.97402 1.22422 0.99619 0.98373 0.96161 1.22042 0.99662 0.95695 0.97185 0.92441 0.92878 0.91996 0.92202 0.91580 0.83456 0.94896 0.90725 0.87501 0.87274 0.85091 0.91101 0.87060 0.90819 0.91773 0.92045 0.91783 0.92093 0.92201 0.92078 0.92253 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.32 37.16 0.35 -1.08 16 2 C -0.15 -1.39 5.58 -26.73 -0.15 -1.54 16 3 C 0.09 0.90 1.59 -67.71 -0.11 0.79 16 4 H 0.07 0.73 7.63 -51.93 -0.40 0.33 16 5 N -0.68 -8.09 5.59 -107.99 -0.60 -8.69 16 6 C 0.11 1.39 5.67 -4.98 -0.03 1.36 16 7 C -0.05 -0.77 5.43 -104.65 -0.57 -1.34 16 8 C -0.18 -3.04 9.70 -39.53 -0.38 -3.42 16 9 C -0.08 -1.45 10.04 -39.61 -0.40 -1.84 16 10 C -0.22 -4.76 9.13 -39.39 -0.36 -5.12 16 11 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 12 O -0.22 -5.84 8.59 0.04 0.00 -5.84 16 13 C -0.39 -11.01 9.90 30.89 0.31 -10.70 16 14 H 0.11 3.04 5.53 -52.48 -0.29 2.75 16 15 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 16 N -0.88 -25.62 13.96 55.48 0.77 -24.85 16 17 Si 0.91 21.80 28.62 -169.99 -4.86 16.93 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 21 C -0.18 -3.64 9.65 -39.40 -0.38 -4.02 16 22 C -0.08 -0.73 2.31 -89.50 -0.21 -0.93 16 23 C -0.12 -0.92 5.36 -25.08 -0.13 -1.05 16 24 C -0.13 -0.94 6.91 -24.74 -0.17 -1.12 16 25 C -0.13 -1.07 6.83 -25.04 -0.17 -1.24 16 26 C -0.11 -1.06 6.20 -25.59 -0.16 -1.22 16 27 H 0.06 0.58 6.49 -51.93 -0.34 0.25 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.53 6.12 -51.93 -0.32 0.22 16 30 H 0.06 0.58 7.81 -51.93 -0.41 0.18 16 31 H 0.07 0.53 7.34 -51.93 -0.38 0.15 16 32 H 0.34 4.37 6.46 -39.29 -0.25 4.11 16 33 H 0.03 0.42 7.75 -51.93 -0.40 0.02 16 34 H 0.07 0.90 7.87 -51.93 -0.41 0.50 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.13 3.01 5.72 -52.49 -0.30 2.71 16 38 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.11 2.07 8.06 -52.48 -0.42 1.65 16 40 H 0.07 0.72 6.25 -51.93 -0.32 0.40 16 41 H 0.06 0.49 7.75 -51.93 -0.40 0.08 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.83 7.37 -51.93 -0.38 0.45 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -28.57 373.38 -9.95 -38.52 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.97 Total: 5.69 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: -2.92 Total: -27.39 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.17 Total: -33.54 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: 0.00 Total: -5.84 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.86 Total: 16.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.57 -9.95 -38.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382811007.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.873 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds