Wall clock time and date at job start Tue Mar 31 2020 10:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47366 * 2 1 4 4 H 1.08996 * 109.47223 * 182.18960 * 3 2 1 5 5 N 1.46901 * 109.47092 * 62.18891 * 3 2 1 6 6 C 1.46901 * 111.00037 * 89.05987 * 5 3 2 7 7 C 1.50700 * 109.47086 * 174.96143 * 6 5 3 8 8 C 1.38328 * 119.96260 * 269.71794 * 7 6 5 9 9 C 1.38277 * 120.13587 * 179.76789 * 8 7 6 10 10 C 1.38127 * 120.07195 * 0.51193 * 9 8 7 11 11 C 1.38858 * 119.92367 * 359.74816 * 10 9 8 12 12 O 1.35754 * 120.06187 * 179.97438 * 11 10 9 13 13 C 1.34828 * 117.00541 * 6.01800 * 12 11 10 14 14 H 1.08003 * 119.99726 * 5.42404 * 13 12 11 15 15 C 1.38652 * 120.00478 * 185.42665 * 13 12 11 16 16 N 1.31551 * 120.00164 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99770 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.46725 * 90.00246 * 17 15 13 19 19 H 1.48499 * 109.46880 * 209.99863 * 17 15 13 20 20 H 1.48492 * 109.47047 * 330.00192 * 17 15 13 21 21 C 1.38075 * 119.96887 * 90.00155 * 7 6 5 22 22 C 1.53004 * 109.47459 * 302.19158 * 3 2 1 23 23 C 1.54264 * 110.02898 * 297.16526 * 22 3 2 24 24 C 1.54884 * 104.19680 * 217.10028 * 23 22 3 25 25 C 1.54896 * 102.74607 * 37.94447 * 24 23 22 26 26 C 1.53871 * 110.03295 * 179.97438 * 22 3 2 27 27 H 1.09002 * 109.47048 * 295.49071 * 1 2 3 28 28 H 1.08993 * 109.47070 * 175.49296 * 1 2 3 29 29 H 1.08998 * 109.46957 * 55.48829 * 1 2 3 30 30 H 1.09001 * 109.47043 * 120.00476 * 2 1 3 31 31 H 1.09001 * 109.46962 * 239.99822 * 2 1 3 32 32 H 1.00902 * 111.00174 * 325.10869 * 5 3 2 33 33 H 1.09001 * 109.47368 * 294.95781 * 6 5 3 34 34 H 1.08996 * 109.47012 * 54.95715 * 6 5 3 35 35 H 1.07997 * 119.93221 * 0.02562 * 8 7 6 36 36 H 1.07999 * 119.96779 * 180.26267 * 9 8 7 37 37 H 1.08000 * 120.03458 * 179.76957 * 10 9 8 38 38 H 0.96996 * 120.00303 * 180.02562 * 16 15 13 39 39 H 1.08004 * 120.03448 * 359.95316 * 21 7 6 40 40 H 1.09005 * 110.01574 * 58.60615 * 22 3 2 41 41 H 1.09001 * 110.48941 * 335.78494 * 23 22 3 42 42 H 1.09004 * 110.48662 * 98.42380 * 23 22 3 43 43 H 1.08993 * 110.76011 * 279.62998 * 24 23 22 44 44 H 1.08997 * 110.91671 * 156.32458 * 24 23 22 45 45 H 1.08994 * 110.48684 * 203.37925 * 25 24 23 46 46 H 1.08997 * 110.59666 * 80.78970 * 25 24 23 47 47 H 1.08992 * 110.03391 * 238.56483 * 26 22 3 48 48 H 1.08998 * 110.03482 * 0.02562 * 26 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1293 1.4426 -0.0393 5 7 1.5941 2.1195 1.2250 6 6 2.5674 1.9390 2.3104 7 6 2.1392 2.7466 3.5086 8 6 2.5751 4.0513 3.6538 9 6 2.1806 4.7972 4.7493 10 6 1.3581 4.2377 5.7076 11 6 0.9232 2.9265 5.5673 12 8 0.1152 2.3736 6.5077 13 6 -0.3297 3.1865 7.4871 14 1 -0.1131 4.2440 7.4511 15 6 -1.0651 2.6650 8.5405 16 7 -1.4995 3.4582 9.4958 17 14 -1.4402 0.8360 8.6024 18 1 -0.3571 0.1332 9.3363 19 1 -2.7327 0.6192 9.3006 20 1 -1.5287 0.3018 7.2197 21 6 1.3169 2.1816 4.4631 22 6 1.4856 2.1795 -1.2208 23 6 2.0042 1.5213 -2.5160 24 6 2.2413 2.7115 -3.4783 25 6 2.7990 3.8071 -2.5360 26 6 1.9905 3.6330 -1.2331 27 1 -0.3633 0.4423 0.9276 28 1 -0.3633 -1.0244 -0.0808 29 1 -0.3633 0.5822 -0.8468 30 1 1.8934 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 0.6788 1.7983 1.5030 33 1 2.6173 0.8845 2.5821 34 1 3.5493 2.2752 1.9776 35 1 3.2216 4.4897 2.9080 36 1 2.5191 5.8169 4.8579 37 1 1.0533 4.8196 6.5649 38 1 -2.0136 3.0933 10.2329 39 1 0.9800 1.1616 4.3510 40 1 0.3958 2.1633 -1.2032 41 1 2.9378 0.9913 -2.3273 42 1 1.2555 0.8430 -2.9254 43 1 1.3044 3.0333 -3.9329 44 1 2.9720 2.4527 -4.2446 45 1 2.6303 4.7969 -2.9599 46 1 3.8612 3.6486 -2.3500 47 1 1.1459 4.3218 -1.2227 48 1 2.6309 3.8132 -0.3697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382811007.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:02 Heat of formation + Delta-G solvation = -41.100208 kcal Electronic energy + Delta-G solvation = -24691.153838 eV Core-core repulsion = 21323.822592 eV Total energy + Delta-G solvation = -3367.331245 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.93990 -40.11412 -38.54901 -36.84112 -34.48475 -33.90942 -31.53857 -30.78627 -29.66997 -29.29571 -27.30868 -26.31453 -25.35821 -23.25086 -22.33387 -21.83105 -21.25815 -20.03645 -19.63089 -18.82690 -16.96088 -16.84297 -16.70049 -16.30330 -16.17202 -15.76010 -15.74660 -15.54948 -15.03733 -14.59636 -14.46419 -14.36589 -14.19409 -14.08088 -13.85320 -13.66178 -13.17094 -12.98927 -12.58170 -12.48534 -12.46554 -12.26655 -12.10964 -11.94492 -11.90664 -11.79265 -11.74595 -11.51643 -11.47518 -11.33466 -11.28292 -10.94545 -10.90976 -9.72701 -9.20095 -9.05147 -8.50509 -6.23083 0.50712 0.71556 1.29781 1.34181 1.50448 2.27074 2.73279 3.02730 3.10493 3.44090 3.79939 3.87265 3.96150 4.00241 4.10143 4.18608 4.22875 4.28301 4.33780 4.45401 4.61610 4.64999 4.69180 4.71250 4.72138 4.73535 4.83586 4.87063 4.91508 4.96225 4.98026 5.05611 5.14752 5.17531 5.20408 5.27001 5.29450 5.33896 5.40991 5.44885 5.56399 5.59923 5.68254 5.70862 5.76679 5.78891 5.92048 6.19100 6.28789 6.49500 6.84056 7.59225 8.61472 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021060 B = 0.003019 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.189880 B = 9273.700733 C =10150.105896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.150 4.150 3 C 0.098 3.902 4 H 0.080 0.920 5 N -0.683 5.683 6 C 0.112 3.888 7 C -0.036 4.036 8 C -0.160 4.160 9 C -0.078 4.078 10 C -0.239 4.239 11 C 0.119 3.881 12 O -0.247 6.247 13 C -0.397 4.397 14 H 0.079 0.921 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.971 3.029 18 H -0.266 1.266 19 H -0.267 1.267 20 H -0.263 1.263 21 C -0.184 4.184 22 C -0.077 4.077 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.108 4.108 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.340 0.660 33 H 0.040 0.960 34 H 0.095 0.905 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.105 0.895 38 H 0.285 0.715 39 H 0.119 0.881 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.046 0.954 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.505 -5.396 -25.849 28.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.189 4.189 3 C -0.012 4.012 4 H 0.098 0.902 5 N -0.314 5.314 6 C -0.016 4.016 7 C -0.036 4.036 8 C -0.179 4.179 9 C -0.096 4.096 10 C -0.259 4.259 11 C 0.071 3.929 12 O -0.155 6.155 13 C -0.474 4.474 14 H 0.096 0.904 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.793 3.207 18 H -0.191 1.191 19 H -0.191 1.191 20 H -0.187 1.187 21 C -0.204 4.204 22 C -0.096 4.096 23 C -0.152 4.152 24 C -0.161 4.161 25 C -0.164 4.164 26 C -0.146 4.146 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.160 0.840 33 H 0.058 0.942 34 H 0.113 0.887 35 H 0.162 0.838 36 H 0.156 0.844 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.560 -4.984 -25.817 27.978 hybrid contribution -0.778 -0.948 1.311 1.795 sum 8.783 -5.932 -24.506 26.699 Atomic orbital electron populations 1.21836 0.95902 1.01909 1.01699 1.22148 0.96510 0.97737 1.02492 1.21726 0.99305 0.90775 0.89385 0.90206 1.60591 1.05353 1.61696 1.03782 1.20806 0.96505 0.96410 0.87920 1.19623 0.94959 0.94746 0.94293 1.20958 1.04139 0.93992 0.98842 1.21128 0.95229 1.00080 0.93143 1.21318 1.05541 0.96218 1.02787 1.19598 0.90585 0.92920 0.89814 1.83516 1.58618 1.38602 1.34716 1.20677 1.33875 0.91718 1.01108 0.90389 1.25279 0.95654 1.04518 0.93447 1.69728 1.37359 1.37800 1.11670 0.85213 0.78334 0.78036 0.79088 1.19127 1.19134 1.18738 1.20275 1.05237 1.00475 0.94411 1.21743 0.99897 0.94640 0.93320 1.22396 1.01147 0.97430 0.94241 1.22486 1.00852 0.95361 0.97446 1.22409 0.99592 0.98849 0.95557 1.22014 0.99181 0.95882 0.97548 0.93856 0.92387 0.91590 0.92806 0.90142 0.84033 0.94202 0.88711 0.83847 0.84414 0.87673 0.90586 0.86253 0.91655 0.91137 0.91400 0.91841 0.90986 0.92082 0.91686 0.93497 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.32 71.98 0.67 -1.87 16 2 C -0.15 -2.27 5.58 30.59 0.17 -2.10 16 3 C 0.10 1.60 1.59 44.91 0.07 1.67 16 4 H 0.08 1.26 7.63 -2.39 -0.02 1.24 16 5 N -0.68 -14.51 5.59 -495.58 -2.77 -17.28 16 6 C 0.11 2.55 5.67 85.56 0.49 3.04 16 7 C -0.04 -1.10 5.43 -19.88 -0.11 -1.21 16 8 C -0.16 -4.89 9.70 22.30 0.22 -4.67 16 9 C -0.08 -2.74 10.04 22.25 0.22 -2.52 16 10 C -0.24 -10.77 9.13 22.39 0.20 -10.57 16 11 C 0.12 5.70 6.65 22.58 0.15 5.85 16 12 O -0.25 -13.65 8.59 -22.77 -0.20 -13.84 16 13 C -0.40 -23.85 9.90 67.92 0.67 -23.18 16 14 H 0.08 4.93 5.53 -2.91 -0.02 4.91 16 15 C 0.01 0.54 5.49 84.83 0.47 1.00 16 16 N -0.92 -56.00 13.96 21.61 0.30 -55.70 16 17 Si 0.97 46.03 28.62 68.60 1.96 48.00 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 21 C -0.18 -7.14 9.65 22.39 0.22 -6.92 16 22 C -0.08 -1.21 2.31 -10.07 -0.02 -1.23 16 23 C -0.11 -1.41 5.36 31.67 0.17 -1.24 16 24 C -0.12 -1.52 6.91 31.89 0.22 -1.30 16 25 C -0.13 -1.79 6.83 31.69 0.22 -1.57 16 26 C -0.11 -1.89 6.20 31.33 0.19 -1.70 16 27 H 0.04 0.83 6.49 -2.39 -0.02 0.81 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 1.01 6.12 -2.39 -0.01 1.00 16 30 H 0.05 0.90 7.81 -2.39 -0.02 0.88 16 31 H 0.08 1.02 7.34 -2.39 -0.02 1.00 16 32 H 0.34 7.98 6.46 -89.69 -0.58 7.40 16 33 H 0.04 0.88 7.75 -2.39 -0.02 0.87 16 34 H 0.09 1.84 7.87 -2.39 -0.02 1.83 16 35 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.11 5.23 5.72 -2.91 -0.02 5.21 16 38 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 39 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 40 H 0.07 1.15 6.25 -2.38 -0.01 1.13 16 41 H 0.07 0.81 7.75 -2.39 -0.02 0.79 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 45 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.06 1.24 7.37 -2.39 -0.02 1.22 16 Total: -1.00 -64.74 373.38 3.88 -60.86 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.36 Total: 26.49 kcal Atomic # 6 Polarization: -52.74 SS G_CDS: 4.22 Total: -48.53 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -2.47 Total: -72.97 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.20 Total: -13.84 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.96 Total: 48.00 kcal Total: -64.74 3.88 -60.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382811007.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.759 kcal (2) G-P(sol) polarization free energy of solvation -64.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds