Wall clock time and date at job start Tue Mar 31 2020 10:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46843 * 2 1 4 4 H 1.09002 * 109.47329 * 54.86303 * 3 2 1 5 5 N 1.46905 * 109.46827 * 174.86462 * 3 2 1 6 6 C 1.46904 * 110.99795 * 273.62147 * 5 3 2 7 7 C 1.50698 * 109.46886 * 176.01463 * 6 5 3 8 8 C 1.38324 * 119.96438 * 269.72802 * 7 6 5 9 9 C 1.38279 * 120.13882 * 179.76954 * 8 7 6 10 10 C 1.38124 * 120.06864 * 0.50246 * 9 8 7 11 11 C 1.38859 * 119.92843 * 359.75015 * 10 9 8 12 12 O 1.35754 * 120.07002 * 179.97438 * 11 10 9 13 13 C 1.34834 * 116.99853 * 5.23256 * 12 11 10 14 14 H 1.07996 * 119.99818 * 5.04740 * 13 12 11 15 15 C 1.38652 * 120.00104 * 185.04691 * 13 12 11 16 16 N 1.31556 * 119.99535 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00155 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47204 * 89.99715 * 17 15 13 19 19 H 1.48493 * 109.47136 * 210.00036 * 17 15 13 20 20 H 1.48502 * 109.46750 * 329.99918 * 17 15 13 21 21 C 1.38072 * 119.96601 * 89.99958 * 7 6 5 22 22 C 1.53003 * 109.47177 * 294.86013 * 3 2 1 23 23 C 1.54262 * 110.03234 * 297.91401 * 22 3 2 24 24 C 1.54964 * 104.15794 * 217.13381 * 23 22 3 25 25 C 1.54889 * 102.77905 * 37.88771 * 24 23 22 26 26 C 1.53874 * 110.03195 * 180.69156 * 22 3 2 27 27 H 1.09002 * 109.47144 * 297.29257 * 1 2 3 28 28 H 1.09003 * 109.47274 * 57.29185 * 1 2 3 29 29 H 1.09006 * 109.47112 * 177.29426 * 1 2 3 30 30 H 1.09001 * 109.47130 * 119.99717 * 2 1 3 31 31 H 1.08993 * 109.46937 * 240.00077 * 2 1 3 32 32 H 1.00895 * 110.99880 * 37.57532 * 5 3 2 33 33 H 1.08998 * 109.47113 * 296.01572 * 6 5 3 34 34 H 1.09006 * 109.46737 * 56.01420 * 6 5 3 35 35 H 1.07995 * 119.93283 * 359.97438 * 8 7 6 36 36 H 1.08001 * 119.97234 * 180.25095 * 9 8 7 37 37 H 1.07996 * 120.03663 * 179.76571 * 10 9 8 38 38 H 0.97005 * 119.99376 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.03644 * 359.95937 * 21 7 6 40 40 H 1.09008 * 110.01352 * 59.30145 * 22 3 2 41 41 H 1.08997 * 110.48668 * 335.78036 * 23 22 3 42 42 H 1.09001 * 110.49089 * 98.42556 * 23 22 3 43 43 H 1.09003 * 110.72316 * 279.57185 * 24 23 22 44 44 H 1.08996 * 110.76575 * 156.22174 * 24 23 22 45 45 H 1.08996 * 110.49103 * 203.40482 * 25 24 23 46 46 H 1.08999 * 110.59886 * 80.81300 * 25 24 23 47 47 H 1.09001 * 110.03329 * 238.57352 * 26 22 3 48 48 H 1.09001 * 110.03129 * 359.95400 * 26 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6034 1.9823 0.8404 5 7 3.5037 1.4444 0.1240 6 6 3.9126 1.3993 1.5342 7 6 5.4142 1.3038 1.6190 8 6 6.0271 0.0641 1.6471 9 6 7.4049 -0.0277 1.7200 10 6 8.1730 1.1189 1.7755 11 6 7.5603 2.3649 1.7528 12 8 8.3124 3.4937 1.8077 13 6 9.6514 3.3394 1.7738 14 1 10.0783 2.3588 1.6239 15 6 10.4803 4.4397 1.9315 16 7 9.9601 5.6342 2.1136 17 14 12.3354 4.2260 1.8838 18 1 12.8152 4.3766 0.4866 19 1 12.9746 5.2568 2.7404 20 1 12.6910 2.8747 2.3864 21 6 6.1764 2.4538 1.6742 22 6 1.6381 2.1255 -1.3089 23 6 2.2921 1.4027 -2.5045 24 6 2.6538 2.5455 -3.4866 25 6 3.1137 3.6800 -2.5376 26 6 2.1599 3.5729 -1.3299 27 1 -0.3633 0.4712 0.9133 28 1 -0.3634 0.5553 -0.8647 29 1 -0.3634 -1.0266 -0.0485 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 3.9115 0.6815 -0.3953 33 1 3.5771 2.3052 2.0390 34 1 3.4654 0.5289 2.0145 35 1 5.4286 -0.8340 1.6086 36 1 7.8809 -0.9971 1.7377 37 1 9.2488 1.0466 1.8363 38 1 10.5401 6.4041 2.2236 39 1 5.6970 3.4214 1.6560 40 1 0.5534 2.1180 -1.4159 41 1 3.1910 0.8749 -2.1860 42 1 1.5860 0.7119 -2.9653 43 1 1.7792 2.8525 -4.0601 44 1 3.4650 2.2435 -4.1490 45 1 3.0073 4.6501 -3.0229 46 1 4.1456 3.5227 -2.2237 47 1 1.3285 4.2679 -1.4480 48 1 2.6986 3.7891 -0.4073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382811009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:06 Heat of formation + Delta-G solvation = -28.063196 kcal Electronic energy + Delta-G solvation = -24874.724185 eV Core-core repulsion = 21507.958267 eV Total energy + Delta-G solvation = -3366.765918 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.45987 -38.85912 -36.79512 -35.48899 -33.05905 -32.22752 -30.35848 -29.16508 -28.60101 -28.37671 -25.64428 -24.97045 -23.60578 -21.98637 -21.56423 -20.68358 -20.27089 -19.00569 -17.64189 -16.93966 -15.99689 -15.60666 -15.23415 -14.97664 -14.84921 -14.52106 -14.30645 -13.97800 -13.59224 -13.41542 -13.29327 -13.08814 -12.69438 -12.54710 -12.38676 -12.17995 -11.81190 -11.75106 -11.51901 -11.27198 -11.23440 -10.94526 -10.88808 -10.79951 -10.73037 -10.69855 -10.57606 -10.46264 -10.42788 -10.34646 -10.07615 -9.32540 -8.81385 -8.25523 -8.00215 -7.20017 -6.41738 -4.00574 2.15667 2.40283 3.14751 3.15185 3.20014 3.98881 4.24474 4.55913 4.67468 4.70105 4.83636 4.93003 5.00115 5.11911 5.14874 5.19335 5.35019 5.40407 5.47023 5.56403 5.58742 5.63280 5.65317 5.72790 5.75675 5.80893 5.84866 5.89742 5.94153 5.94793 5.99353 6.04838 6.08190 6.15135 6.22144 6.29073 6.37179 6.40502 6.53372 6.61997 6.70327 6.96015 7.10654 7.18367 7.34448 7.37849 7.47486 7.56434 7.86017 8.03319 9.04037 9.75196 10.76432 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.003229 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.919198 B = 8670.529591 C = 9576.498024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.155 4.155 3 C 0.092 3.908 4 H 0.075 0.925 5 N -0.670 5.670 6 C 0.107 3.893 7 C -0.048 4.048 8 C -0.208 4.208 9 C -0.076 4.076 10 C -0.233 4.233 11 C 0.152 3.848 12 O -0.178 6.178 13 C -0.391 4.391 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.863 5.863 17 Si 0.940 3.060 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.268 1.268 21 C -0.165 4.165 22 C -0.079 4.079 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.119 4.119 26 C -0.109 4.109 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.341 0.659 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.269 0.731 39 H 0.116 0.884 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.048 0.952 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.269 -9.428 -6.183 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C -0.018 4.018 4 H 0.093 0.907 5 N -0.300 5.300 6 C -0.022 4.022 7 C -0.048 4.048 8 C -0.228 4.228 9 C -0.094 4.094 10 C -0.252 4.252 11 C 0.098 3.902 12 O -0.082 6.082 13 C -0.467 4.467 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.498 5.498 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.193 1.193 21 C -0.185 4.185 22 C -0.098 4.098 23 C -0.152 4.152 24 C -0.161 4.161 25 C -0.157 4.157 26 C -0.147 4.147 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.161 0.839 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.143 0.857 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.067 0.933 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.181 -8.239 -6.159 19.174 hybrid contribution 0.840 -1.177 0.251 1.467 sum -15.341 -9.415 -5.908 18.945 Atomic orbital electron populations 1.21751 0.95663 1.01355 1.01881 1.22281 0.96683 0.98484 1.02002 1.21658 0.88218 0.94029 0.97917 0.90694 1.60601 1.07115 1.51592 1.10727 1.20829 0.91839 1.00340 0.89156 1.19170 0.93591 0.92659 0.99407 1.20408 0.94427 0.95829 1.12093 1.20682 0.93582 0.97064 0.98118 1.21178 1.00566 0.92178 1.11317 1.19380 0.91239 0.86946 0.92611 1.83995 1.18917 1.26293 1.78993 1.21299 0.78121 0.95991 1.51297 0.89199 1.25270 1.00315 0.94383 0.96543 1.70044 1.35887 0.98628 1.45230 0.85730 0.80780 0.78466 0.78565 1.19895 1.20285 1.19252 1.20009 0.90805 0.98056 1.09662 1.21798 0.98731 0.95352 0.93914 1.22370 1.00214 0.97318 0.95307 1.22470 1.00157 0.96088 0.97408 1.22277 1.00415 0.97474 0.95498 1.22029 0.98093 0.94930 0.99654 0.92882 0.92333 0.93137 0.92254 0.91636 0.83919 0.90687 0.95015 0.88200 0.87686 0.85732 0.92076 0.86551 0.91374 0.91151 0.92765 0.92357 0.92094 0.92716 0.90838 0.93332 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.74 37.16 0.36 -0.79 16 2 C -0.16 -1.39 5.26 -26.73 -0.14 -1.53 16 3 C 0.09 0.94 1.63 -67.71 -0.11 0.83 16 4 H 0.07 0.80 7.83 -51.93 -0.41 0.39 16 5 N -0.67 -8.32 5.17 -107.98 -0.56 -8.88 16 6 C 0.11 1.48 5.60 -4.98 -0.03 1.45 16 7 C -0.05 -0.84 5.35 -104.65 -0.56 -1.40 16 8 C -0.21 -3.56 9.70 -39.53 -0.38 -3.95 16 9 C -0.08 -1.41 10.04 -39.61 -0.40 -1.81 16 10 C -0.23 -5.13 9.14 -39.39 -0.36 -5.49 16 11 C 0.15 3.71 6.65 -39.10 -0.26 3.45 16 12 O -0.18 -5.15 9.76 0.03 0.00 -5.15 16 13 C -0.39 -11.03 9.45 30.89 0.29 -10.74 16 14 H 0.09 2.36 5.28 -52.49 -0.28 2.08 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -25.52 13.67 55.48 0.76 -24.77 16 17 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 C -0.17 -3.52 9.65 -39.40 -0.38 -3.90 16 22 C -0.08 -0.79 2.58 -89.50 -0.23 -1.02 16 23 C -0.11 -1.13 5.11 -25.03 -0.13 -1.26 16 24 C -0.12 -1.28 6.91 -24.70 -0.17 -1.45 16 25 C -0.12 -1.41 6.83 -25.07 -0.17 -1.58 16 26 C -0.11 -1.25 6.19 -25.61 -0.16 -1.40 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.44 6.44 -51.93 -0.33 0.10 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.56 7.40 -51.93 -0.38 0.18 16 31 H 0.06 0.59 7.07 -51.93 -0.37 0.22 16 32 H 0.34 4.28 7.10 -39.29 -0.28 4.00 16 33 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 34 H 0.03 0.40 7.33 -51.93 -0.38 0.02 16 35 H 0.10 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.12 2.76 5.70 -52.49 -0.30 2.46 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 40 H 0.07 0.62 6.52 -51.92 -0.34 0.28 16 41 H 0.07 0.76 6.18 -51.93 -0.32 0.44 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 1.00 7.35 -51.93 -0.38 0.62 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -29.44 374.68 -10.07 -39.51 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.97 Total: 7.57 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: -2.92 Total: -29.61 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.20 Total: -33.65 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.44 -10.07 -39.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382811009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.448 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds