Wall clock time and date at job start Tue Mar 31 2020 10:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46843 * 2 1 4 4 H 1.09002 * 109.47329 * 54.86303 * 3 2 1 5 5 N 1.46905 * 109.46827 * 174.86462 * 3 2 1 6 6 C 1.46904 * 110.99795 * 273.62147 * 5 3 2 7 7 C 1.50698 * 109.46886 * 176.01463 * 6 5 3 8 8 C 1.38324 * 119.96438 * 269.72802 * 7 6 5 9 9 C 1.38279 * 120.13882 * 179.76954 * 8 7 6 10 10 C 1.38124 * 120.06864 * 0.50246 * 9 8 7 11 11 C 1.38859 * 119.92843 * 359.75015 * 10 9 8 12 12 O 1.35754 * 120.07002 * 179.97438 * 11 10 9 13 13 C 1.34834 * 116.99853 * 5.23256 * 12 11 10 14 14 H 1.07996 * 119.99818 * 5.04740 * 13 12 11 15 15 C 1.38652 * 120.00104 * 185.04691 * 13 12 11 16 16 N 1.31556 * 119.99535 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00155 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47204 * 89.99715 * 17 15 13 19 19 H 1.48493 * 109.47136 * 210.00036 * 17 15 13 20 20 H 1.48502 * 109.46750 * 329.99918 * 17 15 13 21 21 C 1.38072 * 119.96601 * 89.99958 * 7 6 5 22 22 C 1.53003 * 109.47177 * 294.86013 * 3 2 1 23 23 C 1.54262 * 110.03234 * 297.91401 * 22 3 2 24 24 C 1.54964 * 104.15794 * 217.13381 * 23 22 3 25 25 C 1.54889 * 102.77905 * 37.88771 * 24 23 22 26 26 C 1.53874 * 110.03195 * 180.69156 * 22 3 2 27 27 H 1.09002 * 109.47144 * 297.29257 * 1 2 3 28 28 H 1.09003 * 109.47274 * 57.29185 * 1 2 3 29 29 H 1.09006 * 109.47112 * 177.29426 * 1 2 3 30 30 H 1.09001 * 109.47130 * 119.99717 * 2 1 3 31 31 H 1.08993 * 109.46937 * 240.00077 * 2 1 3 32 32 H 1.00895 * 110.99880 * 37.57532 * 5 3 2 33 33 H 1.08998 * 109.47113 * 296.01572 * 6 5 3 34 34 H 1.09006 * 109.46737 * 56.01420 * 6 5 3 35 35 H 1.07995 * 119.93283 * 359.97438 * 8 7 6 36 36 H 1.08001 * 119.97234 * 180.25095 * 9 8 7 37 37 H 1.07996 * 120.03663 * 179.76571 * 10 9 8 38 38 H 0.97005 * 119.99376 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.03644 * 359.95937 * 21 7 6 40 40 H 1.09008 * 110.01352 * 59.30145 * 22 3 2 41 41 H 1.08997 * 110.48668 * 335.78036 * 23 22 3 42 42 H 1.09001 * 110.49089 * 98.42556 * 23 22 3 43 43 H 1.09003 * 110.72316 * 279.57185 * 24 23 22 44 44 H 1.08996 * 110.76575 * 156.22174 * 24 23 22 45 45 H 1.08996 * 110.49103 * 203.40482 * 25 24 23 46 46 H 1.08999 * 110.59886 * 80.81300 * 25 24 23 47 47 H 1.09001 * 110.03329 * 238.57352 * 26 22 3 48 48 H 1.09001 * 110.03129 * 359.95400 * 26 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6034 1.9823 0.8404 5 7 3.5037 1.4444 0.1240 6 6 3.9126 1.3993 1.5342 7 6 5.4142 1.3038 1.6190 8 6 6.0271 0.0641 1.6471 9 6 7.4049 -0.0277 1.7200 10 6 8.1730 1.1189 1.7755 11 6 7.5603 2.3649 1.7528 12 8 8.3124 3.4937 1.8077 13 6 9.6514 3.3394 1.7738 14 1 10.0783 2.3588 1.6239 15 6 10.4803 4.4397 1.9315 16 7 9.9601 5.6342 2.1136 17 14 12.3354 4.2260 1.8838 18 1 12.8152 4.3766 0.4866 19 1 12.9746 5.2568 2.7404 20 1 12.6910 2.8747 2.3864 21 6 6.1764 2.4538 1.6742 22 6 1.6381 2.1255 -1.3089 23 6 2.2921 1.4027 -2.5045 24 6 2.6538 2.5455 -3.4866 25 6 3.1137 3.6800 -2.5376 26 6 2.1599 3.5729 -1.3299 27 1 -0.3633 0.4712 0.9133 28 1 -0.3634 0.5553 -0.8647 29 1 -0.3634 -1.0266 -0.0485 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 3.9115 0.6815 -0.3953 33 1 3.5771 2.3052 2.0390 34 1 3.4654 0.5289 2.0145 35 1 5.4286 -0.8340 1.6086 36 1 7.8809 -0.9971 1.7377 37 1 9.2488 1.0466 1.8363 38 1 10.5401 6.4041 2.2236 39 1 5.6970 3.4214 1.6560 40 1 0.5534 2.1180 -1.4159 41 1 3.1910 0.8749 -2.1860 42 1 1.5860 0.7119 -2.9653 43 1 1.7792 2.8525 -4.0601 44 1 3.4650 2.2435 -4.1490 45 1 3.0073 4.6501 -3.0229 46 1 4.1456 3.5227 -2.2237 47 1 1.3285 4.2679 -1.4480 48 1 2.6986 3.7891 -0.4073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382811009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:05 Heat of formation + Delta-G solvation = -43.729420 kcal Electronic energy + Delta-G solvation = -24875.403524 eV Core-core repulsion = 21507.958267 eV Total energy + Delta-G solvation = -3367.445257 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.84021 -40.11818 -38.42797 -36.54516 -34.36540 -33.97998 -31.64663 -30.66986 -29.61929 -29.33688 -27.43851 -26.31066 -24.59241 -23.23469 -22.70895 -22.26910 -21.24199 -19.91372 -19.44314 -18.74216 -16.88030 -16.80719 -16.56011 -16.42781 -16.06481 -15.91581 -15.73657 -15.44262 -14.82871 -14.73734 -14.51533 -14.13666 -13.99263 -13.72673 -13.57568 -13.41372 -13.39219 -12.92265 -12.70295 -12.46536 -12.40633 -12.27399 -12.15141 -12.10895 -11.96347 -11.83622 -11.73543 -11.55962 -11.33787 -11.23178 -11.17058 -10.95565 -10.79645 -9.66413 -9.16855 -8.94266 -8.46455 -6.14830 0.55216 0.76289 1.34275 1.44073 1.52023 2.17875 2.80283 3.12364 3.43053 3.52878 3.74100 3.86666 3.97335 4.02950 4.13903 4.20490 4.27223 4.34136 4.41199 4.44191 4.61107 4.66638 4.67947 4.71074 4.73650 4.77791 4.82160 4.88022 4.92248 5.04536 5.06251 5.11800 5.13667 5.15458 5.17301 5.27881 5.29313 5.33047 5.35930 5.43191 5.55381 5.62349 5.68243 5.69472 5.75439 5.80007 6.03678 6.18826 6.29343 6.57370 6.98246 7.80641 8.77129 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.003229 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.919198 B = 8670.529591 C = 9576.498024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.095 3.905 4 H 0.071 0.929 5 N -0.680 5.680 6 C 0.114 3.886 7 C -0.036 4.036 8 C -0.183 4.183 9 C -0.072 4.072 10 C -0.246 4.246 11 C 0.112 3.888 12 O -0.235 6.235 13 C -0.413 4.413 14 H 0.100 0.900 15 C -0.024 4.024 16 N -0.922 5.922 17 Si 1.019 2.981 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.252 1.252 21 C -0.182 4.182 22 C -0.074 4.074 23 C -0.111 4.111 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.110 4.110 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.343 0.657 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.116 0.884 38 H 0.272 0.728 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.043 0.957 47 H 0.058 0.942 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.950 -12.953 -6.841 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C -0.014 4.014 4 H 0.089 0.911 5 N -0.311 5.311 6 C -0.014 4.014 7 C -0.036 4.036 8 C -0.202 4.202 9 C -0.090 4.090 10 C -0.265 4.265 11 C 0.062 3.938 12 O -0.142 6.142 13 C -0.489 4.489 14 H 0.117 0.883 15 C -0.221 4.221 16 N -0.560 5.560 17 Si 0.838 3.162 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.176 1.176 21 C -0.202 4.202 22 C -0.093 4.093 23 C -0.148 4.148 24 C -0.158 4.158 25 C -0.161 4.161 26 C -0.147 4.147 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.163 0.837 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.077 0.923 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.909 -11.817 -6.823 22.515 hybrid contribution 1.078 -0.267 0.419 1.187 sum -16.831 -12.085 -6.404 21.687 Atomic orbital electron populations 1.21738 0.94631 1.01987 1.02128 1.22196 0.97498 0.96927 1.02102 1.21658 0.86582 0.95268 0.97903 0.91081 1.60526 1.08889 1.52019 1.09703 1.20752 0.89033 1.01274 0.90374 1.19590 0.95556 0.91646 0.96838 1.20963 0.94293 0.96980 1.07986 1.21120 0.94185 0.97330 0.96321 1.21291 1.00632 0.92581 1.12022 1.19932 0.92250 0.87170 0.94496 1.83952 1.19457 1.28748 1.82020 1.21798 0.78590 0.96806 1.51683 0.88262 1.26595 1.05973 0.93715 0.95833 1.70197 1.38050 0.99772 1.47996 0.84590 0.73442 0.79150 0.79049 1.18841 1.19541 1.17584 1.20181 0.90126 0.99139 1.10729 1.21790 0.99611 0.93999 0.93883 1.22348 1.00202 0.97239 0.95053 1.22467 1.00606 0.95522 0.97230 1.22259 0.98903 0.98470 0.96419 1.22016 0.98001 0.96605 0.98121 0.92885 0.91873 0.92354 0.92368 0.91277 0.83730 0.91325 0.92394 0.83660 0.83791 0.86637 0.91890 0.88084 0.89655 0.92138 0.90922 0.90895 0.92328 0.92585 0.93845 0.92323 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.74 71.98 0.70 -1.06 16 2 C -0.15 -2.12 5.26 30.59 0.16 -1.96 16 3 C 0.10 1.73 1.63 44.92 0.07 1.80 16 4 H 0.07 1.37 7.83 -2.39 -0.02 1.35 16 5 N -0.68 -15.76 5.17 -495.55 -2.56 -18.32 16 6 C 0.11 2.92 5.60 85.56 0.48 3.40 16 7 C -0.04 -1.20 5.35 -19.88 -0.11 -1.31 16 8 C -0.18 -5.57 9.70 22.30 0.22 -5.36 16 9 C -0.07 -2.45 10.04 22.25 0.22 -2.23 16 10 C -0.25 -10.94 9.14 22.39 0.20 -10.73 16 11 C 0.11 5.73 6.65 22.58 0.15 5.88 16 12 O -0.23 -14.61 9.76 -22.82 -0.22 -14.83 16 13 C -0.41 -24.66 9.45 67.92 0.64 -24.02 16 14 H 0.10 5.45 5.28 -2.91 -0.02 5.44 16 15 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 16 N -0.92 -57.87 13.67 21.61 0.30 -57.57 16 17 Si 1.02 43.72 29.55 68.60 2.03 45.75 16 18 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 20 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 21 C -0.18 -8.06 9.65 22.39 0.22 -7.85 16 22 C -0.07 -1.31 2.58 -10.07 -0.03 -1.34 16 23 C -0.11 -1.93 5.11 31.69 0.16 -1.77 16 24 C -0.12 -2.33 6.91 31.91 0.22 -2.10 16 25 C -0.12 -2.94 6.83 31.67 0.22 -2.72 16 26 C -0.11 -2.45 6.19 31.32 0.19 -2.25 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.71 6.44 -2.39 -0.02 0.69 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.06 0.87 7.40 -2.39 -0.02 0.85 16 31 H 0.07 0.97 7.07 -2.39 -0.02 0.95 16 32 H 0.34 7.75 7.10 -89.70 -0.64 7.11 16 33 H 0.07 1.87 8.07 -2.39 -0.02 1.85 16 34 H 0.06 1.22 7.33 -2.38 -0.02 1.20 16 35 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 36 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 37 H 0.12 5.25 5.70 -2.91 -0.02 5.24 16 38 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 39 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.09 1.27 6.52 -2.38 -0.02 1.26 16 41 H 0.06 1.18 6.18 -2.39 -0.01 1.17 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.05 1.40 7.35 -2.39 -0.02 1.38 16 Total: -1.00 -70.11 374.68 4.03 -66.07 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: 0.30 Total: 33.45 kcal Atomic # 6 Polarization: -58.74 SS G_CDS: 4.19 Total: -54.55 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -2.27 Total: -75.90 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.22 Total: -14.83 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -70.11 4.03 -66.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382811009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.345 kcal (2) G-P(sol) polarization free energy of solvation -70.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds