Wall clock time and date at job start Tue Mar 31 2020 10:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47042 * 2 1 4 4 H 1.08993 * 109.47144 * 56.59709 * 3 2 1 5 5 N 1.46894 * 109.47248 * 296.59469 * 3 2 1 6 6 C 1.46902 * 111.00305 * 303.78271 * 5 3 2 7 7 C 1.50695 * 109.47214 * 176.43695 * 6 5 3 8 8 C 1.38308 * 119.92665 * 90.00064 * 7 6 5 9 9 C 1.38102 * 120.06695 * 180.29341 * 8 7 6 10 10 C 1.38881 * 119.93110 * 359.47896 * 9 8 7 11 11 O 1.35752 * 120.07044 * 180.24880 * 10 9 8 12 12 C 1.34829 * 117.00164 * 185.82799 * 11 10 9 13 13 H 1.08004 * 119.99930 * 4.88703 * 12 11 10 14 14 C 1.38654 * 120.00248 * 184.88280 * 12 11 10 15 15 N 1.31556 * 119.99673 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00059 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46979 * 89.99975 * 16 14 12 18 18 H 1.48501 * 109.47062 * 209.99964 * 16 14 12 19 19 H 1.48499 * 109.47399 * 330.00450 * 16 14 12 20 20 C 1.38880 * 119.86218 * 0.52164 * 10 9 8 21 21 C 1.38100 * 119.92940 * 359.72566 * 20 10 9 22 22 C 1.53006 * 109.46693 * 176.59737 * 3 2 1 23 23 C 1.54261 * 110.03302 * 297.16523 * 22 3 2 24 24 C 1.54889 * 104.19550 * 217.10943 * 23 22 3 25 25 C 1.54885 * 102.75144 * 37.94461 * 24 23 22 26 26 C 1.53875 * 110.02799 * 180.02562 * 22 3 2 27 27 H 1.09001 * 109.47120 * 295.34787 * 1 2 3 28 28 H 1.09000 * 109.46883 * 55.35316 * 1 2 3 29 29 H 1.09005 * 109.47194 * 175.35140 * 1 2 3 30 30 H 1.09000 * 109.46916 * 239.99944 * 2 1 3 31 31 H 1.09002 * 109.46837 * 120.00766 * 2 1 3 32 32 H 1.00899 * 110.99796 * 67.73475 * 5 3 2 33 33 H 1.09004 * 109.46786 * 56.43670 * 6 5 3 34 34 H 1.09001 * 109.47136 * 296.44219 * 6 5 3 35 35 H 1.07995 * 119.96833 * 0.02605 * 8 7 6 36 36 H 1.07997 * 120.03162 * 179.72486 * 9 8 7 37 37 H 0.96999 * 119.99295 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.04037 * 179.70770 * 20 10 9 39 39 H 1.08002 * 119.96546 * 180.02562 * 21 20 10 40 40 H 1.08998 * 110.01870 * 58.61326 * 22 3 2 41 41 H 1.08998 * 110.48786 * 335.78395 * 23 22 3 42 42 H 1.09000 * 110.48410 * 98.43026 * 23 22 3 43 43 H 1.08996 * 110.75456 * 279.62551 * 24 23 22 44 44 H 1.09003 * 110.91519 * 156.33100 * 24 23 22 45 45 H 1.08996 * 110.48820 * 203.38593 * 25 24 23 46 46 H 1.08999 * 110.60226 * 80.78995 * 25 24 23 47 47 H 1.09001 * 110.03427 * 238.56888 * 26 22 3 48 48 H 1.09002 * 110.03429 * 359.97438 * 26 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6277 1.9736 0.8579 5 7 1.6187 2.1108 -1.2384 6 6 2.0817 1.3707 -2.4199 7 6 1.5580 2.0360 -3.6665 8 6 2.2995 3.0275 -4.2829 9 6 1.8196 3.6434 -5.4220 10 6 0.5960 3.2587 -5.9546 11 8 0.1239 3.8587 -7.0771 12 6 -1.1212 3.5248 -7.4722 13 1 -1.7246 2.8703 -6.8605 14 6 -1.6272 4.0216 -8.6637 15 7 -0.8921 4.8185 -9.4089 16 14 -3.3524 3.5595 -9.2107 17 1 -4.3230 4.5475 -8.6746 18 1 -3.4173 3.5568 -10.6943 19 1 -3.6888 2.2070 -8.6980 20 6 -0.1463 2.2628 -5.3333 21 6 0.3368 1.6543 -4.1915 22 6 3.5677 1.4432 0.0856 23 6 4.0227 0.8074 1.4154 24 6 5.2559 1.6455 1.8347 25 6 4.8517 3.0811 1.4169 26 6 4.0947 2.8889 0.0872 27 1 -0.3633 0.4400 0.9287 28 1 -0.3633 0.5843 -0.8454 29 1 -0.3634 -1.0243 -0.0833 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 0.6176 2.2356 -1.2593 33 1 1.7142 0.3455 -2.3734 34 1 3.1715 1.3654 -2.4412 35 1 3.2528 3.3234 -3.8707 36 1 2.3970 4.4206 -5.9004 37 1 -1.2462 5.1663 -10.2423 38 1 -1.1003 1.9647 -5.7423 39 1 -0.2398 0.8795 -3.7081 40 1 3.9888 0.8928 -0.7557 41 1 3.2353 0.8861 2.1650 42 1 4.3035 -0.2348 1.2635 43 1 6.1451 1.3217 1.2939 44 1 5.4180 1.5877 2.9111 45 1 5.7374 3.6982 1.2660 46 1 4.1988 3.5291 2.1660 47 1 4.7723 3.0402 -0.7531 48 1 3.2622 3.5899 0.0265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382811140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:09 Heat of formation + Delta-G solvation = -27.564321 kcal Electronic energy + Delta-G solvation = -24621.087970 eV Core-core repulsion = 21254.343685 eV Total energy + Delta-G solvation = -3366.744285 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.59932 -38.85695 -36.94503 -35.83721 -32.54672 -31.94937 -30.18506 -29.92361 -28.90042 -28.38200 -25.70610 -24.78935 -24.00387 -21.92918 -21.18301 -20.78699 -20.31892 -19.00190 -17.95990 -17.04237 -16.20830 -15.88886 -15.49658 -14.77977 -14.56791 -14.42307 -14.22133 -13.93184 -13.79190 -13.57691 -13.40016 -13.37819 -12.66748 -12.60777 -12.43071 -12.22294 -12.01869 -11.63172 -11.51423 -11.28454 -11.21660 -11.10966 -11.01337 -10.94305 -10.82604 -10.68971 -10.65195 -10.50688 -10.46779 -10.39729 -10.20312 -9.33982 -8.81931 -8.24637 -8.12764 -7.14571 -6.43980 -4.02571 2.25743 2.32786 3.13147 3.13650 3.18510 3.97434 4.22546 4.48135 4.52433 4.58079 4.80495 4.87041 4.97658 5.00152 5.13218 5.28773 5.30229 5.36730 5.43374 5.43589 5.48118 5.50624 5.52550 5.56787 5.65034 5.69374 5.76525 5.78388 5.81123 5.88582 5.91425 5.95345 6.03749 6.07705 6.13482 6.21304 6.25627 6.32657 6.45480 6.47640 6.74653 6.93703 7.06768 7.18186 7.30096 7.40894 7.46419 7.57036 7.86784 8.01238 9.01826 9.72914 10.74238 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.026492 B = 0.002696 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.655896 B =10383.097811 C =11179.106888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.163 4.163 3 C 0.093 3.907 4 H 0.078 0.922 5 N -0.675 5.675 6 C 0.112 3.888 7 C -0.183 4.183 8 C -0.052 4.052 9 C -0.195 4.195 10 C 0.155 3.845 11 O -0.179 6.179 12 C -0.391 4.391 13 H 0.091 0.909 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.268 1.268 20 C -0.234 4.234 21 C -0.067 4.067 22 C -0.083 4.083 23 C -0.119 4.119 24 C -0.126 4.126 25 C -0.127 4.127 26 C -0.110 4.110 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.341 0.659 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.270 0.730 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.163 -8.319 20.611 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.203 4.203 3 C -0.017 4.017 4 H 0.096 0.904 5 N -0.305 5.305 6 C -0.016 4.016 7 C -0.185 4.185 8 C -0.071 4.071 9 C -0.214 4.214 10 C 0.101 3.899 11 O -0.082 6.082 12 C -0.467 4.467 13 H 0.108 0.892 14 C -0.166 4.166 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.193 1.193 20 C -0.254 4.254 21 C -0.086 4.086 22 C -0.101 4.101 23 C -0.157 4.157 24 C -0.163 4.163 25 C -0.165 4.165 26 C -0.147 4.147 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.161 0.839 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.080 0.920 38 H 0.143 0.857 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.757 -7.576 20.205 22.931 hybrid contribution -1.572 -1.105 -0.343 1.952 sum 6.185 -8.681 19.862 22.541 Atomic orbital electron populations 1.21784 0.95886 1.01705 1.01808 1.22307 0.96208 0.99275 1.02475 1.21714 0.94731 0.91940 0.93305 0.90437 1.60753 1.18955 1.50170 1.00666 1.20710 0.99469 0.94002 0.87381 1.19171 0.97314 1.02924 0.99054 1.20462 0.98279 0.94510 0.93857 1.20225 0.96725 1.05043 0.99396 1.19410 0.92398 0.90528 0.87526 1.83990 1.31595 1.57702 1.34924 1.21306 0.87921 1.31442 1.06041 0.89170 1.25282 0.99998 0.96250 0.95024 1.70041 1.36770 1.29995 1.13002 0.85723 0.80479 0.79062 0.78225 1.19877 1.20262 1.19256 1.21116 1.02869 1.01762 0.99605 1.20579 0.94729 0.98042 0.95234 1.21780 0.94360 0.96694 0.97306 1.22421 0.97496 0.98730 0.97008 1.22487 0.97887 0.95654 1.00283 1.22393 0.99736 0.96472 0.97885 1.22049 0.99860 0.96460 0.96373 0.92795 0.92573 0.92849 0.91457 0.91730 0.83948 0.94984 0.91189 0.87136 0.86653 0.92044 0.85740 0.88088 0.91239 0.91671 0.92088 0.91784 0.92064 0.92161 0.92011 0.92327 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.76 37.16 0.36 -1.02 16 2 C -0.16 -1.47 4.92 -26.73 -0.13 -1.60 16 3 C 0.09 0.90 1.79 -67.71 -0.12 0.78 16 4 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 5 N -0.67 -7.99 5.69 -108.00 -0.61 -8.61 16 6 C 0.11 1.48 5.05 -4.98 -0.03 1.45 16 7 C -0.18 -3.08 5.36 -104.57 -0.56 -3.64 16 8 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 9 C -0.19 -4.16 9.99 -39.39 -0.39 -4.56 16 10 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 11 O -0.18 -5.15 9.76 0.05 0.00 -5.15 16 12 C -0.39 -10.99 9.45 30.89 0.29 -10.70 16 13 H 0.09 2.35 5.28 -52.48 -0.28 2.07 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 15 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 16 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 C -0.23 -5.10 9.14 -39.39 -0.36 -5.46 16 21 C -0.07 -1.21 9.69 -39.61 -0.38 -1.60 16 22 C -0.08 -0.77 2.18 -89.50 -0.19 -0.97 16 23 C -0.12 -0.94 5.26 -25.08 -0.13 -1.07 16 24 C -0.13 -0.97 6.91 -24.74 -0.17 -1.14 16 25 C -0.13 -1.08 6.83 -25.10 -0.17 -1.25 16 26 C -0.11 -1.09 6.19 -25.64 -0.16 -1.25 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.56 6.71 -51.93 -0.35 0.21 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.67 6.08 -51.93 -0.32 0.35 16 31 H 0.06 0.53 7.17 -51.93 -0.37 0.16 16 32 H 0.34 4.19 7.25 -39.29 -0.28 3.91 16 33 H 0.03 0.41 5.90 -51.93 -0.31 0.10 16 34 H 0.07 0.91 6.56 -51.93 -0.34 0.57 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.12 2.73 5.71 -52.49 -0.30 2.43 16 39 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.07 0.71 6.67 -51.93 -0.35 0.37 16 41 H 0.06 0.50 7.76 -51.93 -0.40 0.10 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.88 7.38 -51.93 -0.38 0.50 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -29.31 372.54 -10.04 -39.35 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.88 Total: 6.77 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: -2.89 Total: -28.85 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.14 Total: -33.33 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.31 -10.04 -39.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382811140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.789 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds