Wall clock time and date at job start Tue Mar 31 2020 10:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47042 * 2 1 4 4 H 1.08993 * 109.47144 * 56.59709 * 3 2 1 5 5 N 1.46894 * 109.47248 * 296.59469 * 3 2 1 6 6 C 1.46902 * 111.00305 * 303.78271 * 5 3 2 7 7 C 1.50695 * 109.47214 * 176.43695 * 6 5 3 8 8 C 1.38308 * 119.92665 * 90.00064 * 7 6 5 9 9 C 1.38102 * 120.06695 * 180.29341 * 8 7 6 10 10 C 1.38881 * 119.93110 * 359.47896 * 9 8 7 11 11 O 1.35752 * 120.07044 * 180.24880 * 10 9 8 12 12 C 1.34829 * 117.00164 * 185.82799 * 11 10 9 13 13 H 1.08004 * 119.99930 * 4.88703 * 12 11 10 14 14 C 1.38654 * 120.00248 * 184.88280 * 12 11 10 15 15 N 1.31556 * 119.99673 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00059 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46979 * 89.99975 * 16 14 12 18 18 H 1.48501 * 109.47062 * 209.99964 * 16 14 12 19 19 H 1.48499 * 109.47399 * 330.00450 * 16 14 12 20 20 C 1.38880 * 119.86218 * 0.52164 * 10 9 8 21 21 C 1.38100 * 119.92940 * 359.72566 * 20 10 9 22 22 C 1.53006 * 109.46693 * 176.59737 * 3 2 1 23 23 C 1.54261 * 110.03302 * 297.16523 * 22 3 2 24 24 C 1.54889 * 104.19550 * 217.10943 * 23 22 3 25 25 C 1.54885 * 102.75144 * 37.94461 * 24 23 22 26 26 C 1.53875 * 110.02799 * 180.02562 * 22 3 2 27 27 H 1.09001 * 109.47120 * 295.34787 * 1 2 3 28 28 H 1.09000 * 109.46883 * 55.35316 * 1 2 3 29 29 H 1.09005 * 109.47194 * 175.35140 * 1 2 3 30 30 H 1.09000 * 109.46916 * 239.99944 * 2 1 3 31 31 H 1.09002 * 109.46837 * 120.00766 * 2 1 3 32 32 H 1.00899 * 110.99796 * 67.73475 * 5 3 2 33 33 H 1.09004 * 109.46786 * 56.43670 * 6 5 3 34 34 H 1.09001 * 109.47136 * 296.44219 * 6 5 3 35 35 H 1.07995 * 119.96833 * 0.02605 * 8 7 6 36 36 H 1.07997 * 120.03162 * 179.72486 * 9 8 7 37 37 H 0.96999 * 119.99295 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.04037 * 179.70770 * 20 10 9 39 39 H 1.08002 * 119.96546 * 180.02562 * 21 20 10 40 40 H 1.08998 * 110.01870 * 58.61326 * 22 3 2 41 41 H 1.08998 * 110.48786 * 335.78395 * 23 22 3 42 42 H 1.09000 * 110.48410 * 98.43026 * 23 22 3 43 43 H 1.08996 * 110.75456 * 279.62551 * 24 23 22 44 44 H 1.09003 * 110.91519 * 156.33100 * 24 23 22 45 45 H 1.08996 * 110.48820 * 203.38593 * 25 24 23 46 46 H 1.08999 * 110.60226 * 80.78995 * 25 24 23 47 47 H 1.09001 * 110.03427 * 238.56888 * 26 22 3 48 48 H 1.09002 * 110.03429 * 359.97438 * 26 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6277 1.9736 0.8579 5 7 1.6187 2.1108 -1.2384 6 6 2.0817 1.3707 -2.4199 7 6 1.5580 2.0360 -3.6665 8 6 2.2995 3.0275 -4.2829 9 6 1.8196 3.6434 -5.4220 10 6 0.5960 3.2587 -5.9546 11 8 0.1239 3.8587 -7.0771 12 6 -1.1212 3.5248 -7.4722 13 1 -1.7246 2.8703 -6.8605 14 6 -1.6272 4.0216 -8.6637 15 7 -0.8921 4.8185 -9.4089 16 14 -3.3524 3.5595 -9.2107 17 1 -4.3230 4.5475 -8.6746 18 1 -3.4173 3.5568 -10.6943 19 1 -3.6888 2.2070 -8.6980 20 6 -0.1463 2.2628 -5.3333 21 6 0.3368 1.6543 -4.1915 22 6 3.5677 1.4432 0.0856 23 6 4.0227 0.8074 1.4154 24 6 5.2559 1.6455 1.8347 25 6 4.8517 3.0811 1.4169 26 6 4.0947 2.8889 0.0872 27 1 -0.3633 0.4400 0.9287 28 1 -0.3633 0.5843 -0.8454 29 1 -0.3634 -1.0243 -0.0833 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 0.6176 2.2356 -1.2593 33 1 1.7142 0.3455 -2.3734 34 1 3.1715 1.3654 -2.4412 35 1 3.2528 3.3234 -3.8707 36 1 2.3970 4.4206 -5.9004 37 1 -1.2462 5.1663 -10.2423 38 1 -1.1003 1.9647 -5.7423 39 1 -0.2398 0.8795 -3.7081 40 1 3.9888 0.8928 -0.7557 41 1 3.2353 0.8861 2.1650 42 1 4.3035 -0.2348 1.2635 43 1 6.1451 1.3217 1.2939 44 1 5.4180 1.5877 2.9111 45 1 5.7374 3.6982 1.2660 46 1 4.1988 3.5291 2.1660 47 1 4.7723 3.0402 -0.7531 48 1 3.2622 3.5899 0.0265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382811140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:08 Heat of formation + Delta-G solvation = -43.174040 kcal Electronic energy + Delta-G solvation = -24621.764858 eV Core-core repulsion = 21254.343685 eV Total energy + Delta-G solvation = -3367.421173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.87176 -40.14897 -38.42996 -36.87481 -34.36247 -33.18488 -31.77815 -30.98434 -29.79170 -29.25908 -27.52425 -26.04061 -24.93469 -23.59239 -22.28200 -21.81628 -21.13076 -19.91107 -19.78456 -18.83730 -17.29612 -16.74710 -16.45651 -16.31075 -16.04777 -15.60189 -15.48212 -15.27676 -15.19969 -14.80258 -14.58475 -14.32649 -14.07699 -13.94737 -13.64718 -13.38572 -13.06993 -13.02448 -12.84681 -12.47431 -12.31342 -12.17004 -12.13353 -12.03406 -11.87194 -11.80471 -11.66270 -11.52441 -11.39602 -11.30348 -11.17304 -11.02317 -10.77784 -9.76088 -9.21090 -8.85402 -8.47072 -6.14963 0.61976 0.70258 1.34474 1.43997 1.52068 2.17705 2.80408 3.13681 3.49596 3.53394 3.75655 3.85142 3.97329 4.05954 4.08976 4.20078 4.24605 4.26795 4.34343 4.48519 4.62444 4.63438 4.68052 4.73079 4.79031 4.81065 4.84551 4.89845 4.91564 4.98405 5.04096 5.11211 5.13918 5.14891 5.18210 5.22770 5.29347 5.33866 5.38055 5.42187 5.53261 5.57358 5.60233 5.69678 5.72995 5.84889 6.03322 6.20067 6.30634 6.57810 6.97780 7.79653 8.76497 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.026492 B = 0.002696 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.655896 B =10383.097811 C =11179.106888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.158 4.158 3 C 0.099 3.901 4 H 0.081 0.919 5 N -0.681 5.681 6 C 0.120 3.880 7 C -0.155 4.155 8 C -0.048 4.048 9 C -0.206 4.206 10 C 0.113 3.887 11 O -0.234 6.234 12 C -0.412 4.412 13 H 0.100 0.900 14 C -0.024 4.024 15 N -0.922 5.922 16 Si 1.019 2.981 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.253 1.253 20 C -0.242 4.242 21 C -0.062 4.062 22 C -0.081 4.081 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.110 4.110 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.340 0.660 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.140 0.860 36 H 0.110 0.890 37 H 0.272 0.728 38 H 0.117 0.883 39 H 0.135 0.865 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.141 -10.533 23.698 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.197 4.197 3 C -0.011 4.011 4 H 0.099 0.901 5 N -0.312 5.312 6 C -0.008 4.008 7 C -0.156 4.156 8 C -0.066 4.066 9 C -0.225 4.225 10 C 0.063 3.937 11 O -0.141 6.141 12 C -0.488 4.488 13 H 0.118 0.882 14 C -0.221 4.221 15 N -0.560 5.560 16 Si 0.838 3.162 17 H -0.188 1.188 18 H -0.196 1.196 19 H -0.176 1.176 20 C -0.261 4.261 21 C -0.081 4.081 22 C -0.100 4.100 23 C -0.152 4.152 24 C -0.161 4.161 25 C -0.164 4.164 26 C -0.148 4.148 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.159 0.841 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.067 0.933 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.763 -9.817 23.356 26.498 hybrid contribution -1.348 -0.500 -0.975 1.737 sum 6.415 -10.317 22.382 25.466 Atomic orbital electron populations 1.21784 0.95809 1.01855 1.01727 1.22248 0.96175 0.98477 1.02791 1.21720 0.94929 0.92363 0.92104 0.90073 1.60700 1.18945 1.50512 1.00996 1.20657 0.99881 0.94268 0.86022 1.19672 0.95914 1.00727 0.99308 1.20815 0.99390 0.94017 0.92412 1.20456 0.96057 1.05474 1.00539 1.19935 0.94074 0.92186 0.87496 1.83949 1.32366 1.60336 1.37422 1.21796 0.88492 1.31813 1.06720 0.88225 1.26596 1.04859 0.95954 0.94734 1.70189 1.39432 1.32432 1.13959 0.84589 0.74333 0.79450 0.77845 1.18804 1.19573 1.17634 1.21217 1.02523 1.01616 1.00753 1.20913 0.95334 0.98064 0.93788 1.21764 0.93981 0.96224 0.98005 1.22399 0.97668 0.98994 0.96169 1.22488 0.97802 0.94839 1.01004 1.22384 0.99660 0.97227 0.97139 1.22020 0.99282 0.96608 0.96886 0.92170 0.93567 0.92439 0.92054 0.90473 0.84071 0.93564 0.90338 0.84181 0.87210 0.91858 0.86558 0.84679 0.91886 0.91086 0.91352 0.91787 0.90970 0.92063 0.91783 0.93292 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.76 71.98 0.70 -1.56 16 2 C -0.16 -2.27 4.92 30.59 0.15 -2.12 16 3 C 0.10 1.59 1.79 44.92 0.08 1.67 16 4 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 5 N -0.68 -14.07 5.69 -495.59 -2.82 -16.89 16 6 C 0.12 2.73 5.05 85.55 0.43 3.16 16 7 C -0.16 -4.80 5.36 -19.83 -0.11 -4.91 16 8 C -0.05 -1.65 9.69 22.25 0.22 -1.44 16 9 C -0.21 -9.01 9.99 22.39 0.22 -8.79 16 10 C 0.11 5.75 6.65 22.58 0.15 5.90 16 11 O -0.23 -14.36 9.76 -22.75 -0.22 -14.58 16 12 C -0.41 -24.34 9.45 67.92 0.64 -23.70 16 13 H 0.10 5.40 5.28 -2.91 -0.02 5.39 16 14 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 15 N -0.92 -57.34 13.67 21.61 0.30 -57.05 16 16 Si 1.02 43.28 29.55 68.60 2.03 45.30 16 17 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 20 C -0.24 -10.62 9.14 22.39 0.20 -10.42 16 21 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 22 C -0.08 -1.27 2.18 -10.07 -0.02 -1.30 16 23 C -0.11 -1.44 5.26 31.67 0.17 -1.27 16 24 C -0.12 -1.56 6.91 31.88 0.22 -1.34 16 25 C -0.13 -1.87 6.83 31.65 0.22 -1.65 16 26 C -0.11 -1.96 6.19 31.30 0.19 -1.77 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.77 6.71 -2.39 -0.02 0.75 16 29 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.06 0.98 6.08 -2.39 -0.01 0.96 16 31 H 0.08 0.95 7.17 -2.39 -0.02 0.94 16 32 H 0.34 7.34 7.25 -89.69 -0.65 6.69 16 33 H 0.05 0.98 5.90 -2.38 -0.01 0.96 16 34 H 0.08 1.74 6.56 -2.39 -0.02 1.72 16 35 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 36 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 37 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.12 5.22 5.71 -2.91 -0.02 5.20 16 39 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 40 H 0.06 1.09 6.67 -2.39 -0.02 1.08 16 41 H 0.07 0.83 7.76 -2.39 -0.02 0.81 16 42 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.06 1.31 7.38 -2.39 -0.02 1.30 16 Total: -1.00 -67.96 372.54 3.73 -64.23 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.29 Total: 31.35 kcal Atomic # 6 Polarization: -56.52 SS G_CDS: 4.15 Total: -52.37 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -2.52 Total: -73.94 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.22 Total: -14.58 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -67.96 3.73 -64.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382811140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.057 kcal (2) G-P(sol) polarization free energy of solvation -67.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds