Wall clock time and date at job start Tue Mar 31 2020 10:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47233 * 2 1 4 4 H 1.08999 * 109.47400 * 54.51362 * 3 2 1 5 5 N 1.46901 * 109.46990 * 174.51103 * 3 2 1 6 6 C 1.46901 * 110.99855 * 271.60006 * 5 3 2 7 7 C 1.50704 * 109.47044 * 184.78334 * 6 5 3 8 8 C 1.38299 * 119.93306 * 89.99644 * 7 6 5 9 9 C 1.38100 * 120.07082 * 180.02562 * 8 7 6 10 10 C 1.38877 * 119.92956 * 359.97438 * 9 8 7 11 11 O 1.35756 * 120.07031 * 180.02562 * 10 9 8 12 12 C 1.34828 * 116.99703 * 5.21823 * 11 10 9 13 13 H 1.07997 * 120.00099 * 354.90966 * 12 11 10 14 14 C 1.38658 * 120.00018 * 174.90093 * 12 11 10 15 15 N 1.31563 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00183 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47034 * 60.00021 * 16 14 12 18 18 H 1.48503 * 109.46956 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46873 * 299.99863 * 16 14 12 20 20 C 1.38879 * 119.86384 * 0.26838 * 10 9 8 21 21 C 1.38106 * 119.92883 * 359.45412 * 20 10 9 22 22 C 1.53003 * 109.47325 * 294.51016 * 3 2 1 23 23 C 1.54263 * 110.03114 * 297.91140 * 22 3 2 24 24 C 1.54970 * 104.15793 * 217.13596 * 23 22 3 25 25 C 1.54885 * 102.77610 * 37.88487 * 24 23 22 26 26 C 1.53867 * 110.03287 * 180.69000 * 22 3 2 27 27 H 1.08996 * 109.47761 * 185.50148 * 1 2 3 28 28 H 1.09001 * 109.46878 * 305.50894 * 1 2 3 29 29 H 1.08998 * 109.46864 * 65.50047 * 1 2 3 30 30 H 1.09005 * 109.47069 * 240.00020 * 2 1 3 31 31 H 1.08996 * 109.46939 * 119.99913 * 2 1 3 32 32 H 1.00906 * 110.99935 * 147.64455 * 5 3 2 33 33 H 1.08995 * 109.47343 * 64.78318 * 6 5 3 34 34 H 1.08999 * 109.47355 * 304.77899 * 6 5 3 35 35 H 1.08005 * 119.96218 * 0.02562 * 8 7 6 36 36 H 1.07993 * 120.03576 * 179.97438 * 9 8 7 37 37 H 0.96996 * 119.99400 * 179.97438 * 15 14 12 38 38 H 1.08002 * 120.04073 * 179.72498 * 20 10 9 39 39 H 1.07997 * 119.96699 * 180.26678 * 21 20 10 40 40 H 1.09000 * 110.01084 * 59.29797 * 22 3 2 41 41 H 1.09007 * 110.48669 * 335.77935 * 23 22 3 42 42 H 1.08997 * 110.49163 * 98.42467 * 23 22 3 43 43 H 1.08998 * 110.71719 * 279.56901 * 24 23 22 44 44 H 1.08996 * 110.92355 * 156.29587 * 24 23 22 45 45 H 1.09004 * 110.48337 * 203.40084 * 25 24 23 46 46 H 1.09001 * 110.59755 * 80.81978 * 25 24 23 47 47 H 1.09005 * 110.03695 * 238.56731 * 26 22 3 48 48 H 1.08996 * 110.03317 * 359.95435 * 26 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5987 1.9839 0.8368 5 7 3.5030 1.4445 0.1325 6 6 3.9036 1.4507 1.5458 7 6 5.4027 1.5711 1.6425 8 6 5.9918 2.8206 1.7091 9 6 7.3653 2.9343 1.7973 10 6 8.1551 1.7922 1.8195 11 8 9.5055 1.9006 1.9066 12 6 10.0104 3.1391 2.0772 13 1 9.3548 3.9971 2.0562 14 6 11.3712 3.3112 2.2798 15 7 12.1698 2.2660 2.3051 16 14 12.0706 5.0270 2.5169 17 1 11.4480 5.6549 3.7100 18 1 13.5399 4.9398 2.7140 19 1 11.7798 5.8503 1.3157 20 6 7.5609 0.5390 1.7474 21 6 6.1865 0.4318 1.6652 22 6 1.6459 2.1229 -1.3125 23 6 2.3067 1.3976 -2.5029 24 6 2.6742 2.5385 -3.4852 25 6 3.1286 3.6748 -2.5358 26 6 2.1678 3.5702 -1.3334 27 1 -0.3634 -1.0229 0.0985 28 1 -0.3633 0.5969 0.8366 29 1 -0.3633 0.4262 -0.9351 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9098 2.2243 -0.3621 33 1 3.5825 0.5226 2.0186 34 1 3.4379 2.2964 2.0518 35 1 5.3770 3.7084 1.6922 36 1 7.8247 3.9103 1.8488 37 1 13.1218 2.3865 2.4465 38 1 8.1727 -0.3510 1.7600 39 1 5.7235 -0.5425 1.6134 40 1 0.5618 2.1151 -1.4258 41 1 3.2038 0.8704 -2.1781 42 1 1.6033 0.7059 -2.9664 43 1 1.8030 2.8442 -4.0644 44 1 3.4882 2.2373 -4.1445 45 1 3.0250 4.6439 -3.0238 46 1 4.1587 3.5181 -2.2156 47 1 1.3371 4.2650 -1.4578 48 1 2.7012 3.7881 -0.4083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382811141.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:14 Heat of formation + Delta-G solvation = -29.071950 kcal Electronic energy + Delta-G solvation = -24729.889012 eV Core-core repulsion = 21363.079351 eV Total energy + Delta-G solvation = -3366.809661 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.62755 -38.91719 -36.82311 -35.35155 -33.10553 -32.18700 -30.14694 -29.89920 -28.73219 -28.35063 -25.65418 -24.77918 -23.60595 -21.92479 -21.76269 -20.68992 -20.28767 -18.89483 -17.96180 -17.07227 -16.32780 -15.88047 -15.21062 -14.81644 -14.65078 -14.44951 -14.15591 -13.86958 -13.71328 -13.54464 -13.35897 -13.25127 -12.90959 -12.66823 -12.44326 -12.05349 -11.80513 -11.75683 -11.58809 -11.31417 -11.23951 -11.21592 -11.06916 -10.83878 -10.77279 -10.70771 -10.65928 -10.55339 -10.44550 -10.39089 -10.18891 -9.32319 -8.82357 -8.26504 -8.13705 -7.15875 -6.44098 -4.03013 2.24965 2.31462 3.13178 3.14211 3.17095 3.97312 4.21288 4.44136 4.50002 4.59702 4.72865 4.99106 5.02453 5.11252 5.18975 5.31022 5.31069 5.33886 5.36609 5.41341 5.46164 5.51412 5.52464 5.58317 5.68111 5.72916 5.80604 5.82197 5.86298 5.88846 5.93935 5.97845 6.00617 6.11259 6.13617 6.21773 6.23583 6.31331 6.40335 6.45996 6.73729 6.92915 7.06022 7.19865 7.30038 7.40427 7.45843 7.59873 7.85719 8.00990 9.01473 9.72235 10.73963 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.002946 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.864214 B = 9500.795607 C =10249.977382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C 0.092 3.908 4 H 0.040 0.960 5 N -0.680 5.680 6 C 0.118 3.882 7 C -0.185 4.185 8 C -0.067 4.067 9 C -0.234 4.234 10 C 0.156 3.844 11 O -0.178 6.178 12 C -0.392 4.392 13 H 0.091 0.909 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.940 3.060 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.270 1.270 20 C -0.195 4.195 21 C -0.052 4.052 22 C -0.095 4.095 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.126 4.126 26 C -0.126 4.126 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.344 0.656 33 H 0.069 0.931 34 H 0.025 0.975 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.270 0.730 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.438 0.210 -6.714 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.018 4.018 4 H 0.058 0.942 5 N -0.313 5.313 6 C -0.010 4.010 7 C -0.186 4.186 8 C -0.085 4.085 9 C -0.254 4.254 10 C 0.102 3.898 11 O -0.081 6.081 12 C -0.469 4.469 13 H 0.108 0.892 14 C -0.165 4.165 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.195 1.195 20 C -0.214 4.214 21 C -0.070 4.070 22 C -0.114 4.114 23 C -0.155 4.155 24 C -0.163 4.163 25 C -0.163 4.163 26 C -0.164 4.164 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.165 0.835 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.119 0.881 36 H 0.143 0.857 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.933 -0.672 -6.746 22.004 hybrid contribution 0.134 1.914 0.429 1.966 sum -20.800 1.241 -6.317 21.773 Atomic orbital electron populations 1.21812 0.96388 1.01340 1.01471 1.21517 0.94414 0.96399 1.02691 1.21601 0.88670 0.95710 0.95848 0.94197 1.60641 1.07331 1.50813 1.12554 1.20675 0.92175 0.99830 0.88332 1.19149 0.93818 0.93274 1.12382 1.20579 0.94094 0.95830 0.98041 1.21104 0.93615 0.98926 1.11733 1.19402 0.84801 0.93308 0.92282 1.83982 1.14537 1.31687 1.77930 1.21270 0.92188 0.82197 1.51201 0.89177 1.25282 0.95075 0.99598 0.96535 1.70033 1.04721 1.29545 1.45509 0.85795 0.78178 0.80360 0.79178 1.19528 1.20267 1.19509 1.20229 0.94298 0.95417 1.11441 1.20466 0.92301 0.97185 0.97089 1.22010 1.00050 0.94250 0.95069 1.22443 1.01351 0.97232 0.94503 1.22498 1.00510 0.95795 0.97497 1.22372 0.99551 0.98527 0.95860 1.22249 0.99016 0.96388 0.98726 0.92910 0.93122 0.92792 0.91221 0.92077 0.83478 0.91280 0.95704 0.88080 0.85712 0.91980 0.86605 0.87056 0.90775 0.89474 0.92297 0.92153 0.91656 0.92032 0.91164 0.92048 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.55 37.16 0.35 -0.85 16 2 C -0.11 -1.07 5.56 -26.73 -0.15 -1.22 16 3 C 0.09 0.93 1.67 -67.71 -0.11 0.82 16 4 H 0.04 0.42 7.67 -51.93 -0.40 0.03 16 5 N -0.68 -8.36 5.27 -107.99 -0.57 -8.93 16 6 C 0.12 1.60 5.67 -4.97 -0.03 1.57 16 7 C -0.18 -3.14 5.35 -104.57 -0.56 -3.70 16 8 C -0.07 -1.21 9.69 -39.61 -0.38 -1.60 16 9 C -0.23 -5.10 9.17 -39.40 -0.36 -5.46 16 10 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 11 O -0.18 -5.12 9.76 0.03 0.00 -5.12 16 12 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16 13 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 14 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 15 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 16 Si 0.94 20.58 29.55 -169.99 -5.02 15.55 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 C -0.19 -4.16 9.99 -39.39 -0.39 -4.56 16 21 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 22 C -0.10 -0.86 2.53 -89.51 -0.23 -1.09 16 23 C -0.12 -1.10 5.03 -25.03 -0.13 -1.23 16 24 C -0.13 -1.13 6.91 -24.70 -0.17 -1.30 16 25 C -0.13 -1.19 6.59 -25.08 -0.17 -1.35 16 26 C -0.13 -1.17 5.69 -25.62 -0.15 -1.31 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.40 6.85 -51.93 -0.36 0.04 16 30 H 0.07 0.70 7.06 -51.93 -0.37 0.34 16 31 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 32 H 0.34 4.42 5.97 -39.29 -0.23 4.19 16 33 H 0.07 0.91 7.64 -51.93 -0.40 0.51 16 34 H 0.02 0.33 7.88 -51.93 -0.41 -0.08 16 35 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.07 0.62 6.71 -51.93 -0.35 0.28 16 41 H 0.09 0.97 6.97 -51.93 -0.36 0.61 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.75 7.80 -51.93 -0.40 0.34 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.62 6.85 -51.93 -0.36 0.27 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -29.28 373.69 -10.08 -39.36 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.96 Total: 7.00 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: -2.91 Total: -28.80 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.19 Total: -33.62 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.00 Total: -5.12 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.28 -10.08 -39.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382811141.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.290 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds