Wall clock time and date at job start Tue Mar 31 2020 10:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47233 * 2 1 4 4 H 1.08999 * 109.47400 * 54.51362 * 3 2 1 5 5 N 1.46901 * 109.46990 * 174.51103 * 3 2 1 6 6 C 1.46901 * 110.99855 * 271.60006 * 5 3 2 7 7 C 1.50704 * 109.47044 * 184.78334 * 6 5 3 8 8 C 1.38299 * 119.93306 * 89.99644 * 7 6 5 9 9 C 1.38100 * 120.07082 * 180.02562 * 8 7 6 10 10 C 1.38877 * 119.92956 * 359.97438 * 9 8 7 11 11 O 1.35756 * 120.07031 * 180.02562 * 10 9 8 12 12 C 1.34828 * 116.99703 * 5.21823 * 11 10 9 13 13 H 1.07997 * 120.00099 * 354.90966 * 12 11 10 14 14 C 1.38658 * 120.00018 * 174.90093 * 12 11 10 15 15 N 1.31563 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00183 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47034 * 60.00021 * 16 14 12 18 18 H 1.48503 * 109.46956 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46873 * 299.99863 * 16 14 12 20 20 C 1.38879 * 119.86384 * 0.26838 * 10 9 8 21 21 C 1.38106 * 119.92883 * 359.45412 * 20 10 9 22 22 C 1.53003 * 109.47325 * 294.51016 * 3 2 1 23 23 C 1.54263 * 110.03114 * 297.91140 * 22 3 2 24 24 C 1.54970 * 104.15793 * 217.13596 * 23 22 3 25 25 C 1.54885 * 102.77610 * 37.88487 * 24 23 22 26 26 C 1.53867 * 110.03287 * 180.69000 * 22 3 2 27 27 H 1.08996 * 109.47761 * 185.50148 * 1 2 3 28 28 H 1.09001 * 109.46878 * 305.50894 * 1 2 3 29 29 H 1.08998 * 109.46864 * 65.50047 * 1 2 3 30 30 H 1.09005 * 109.47069 * 240.00020 * 2 1 3 31 31 H 1.08996 * 109.46939 * 119.99913 * 2 1 3 32 32 H 1.00906 * 110.99935 * 147.64455 * 5 3 2 33 33 H 1.08995 * 109.47343 * 64.78318 * 6 5 3 34 34 H 1.08999 * 109.47355 * 304.77899 * 6 5 3 35 35 H 1.08005 * 119.96218 * 0.02562 * 8 7 6 36 36 H 1.07993 * 120.03576 * 179.97438 * 9 8 7 37 37 H 0.96996 * 119.99400 * 179.97438 * 15 14 12 38 38 H 1.08002 * 120.04073 * 179.72498 * 20 10 9 39 39 H 1.07997 * 119.96699 * 180.26678 * 21 20 10 40 40 H 1.09000 * 110.01084 * 59.29797 * 22 3 2 41 41 H 1.09007 * 110.48669 * 335.77935 * 23 22 3 42 42 H 1.08997 * 110.49163 * 98.42467 * 23 22 3 43 43 H 1.08998 * 110.71719 * 279.56901 * 24 23 22 44 44 H 1.08996 * 110.92355 * 156.29587 * 24 23 22 45 45 H 1.09004 * 110.48337 * 203.40084 * 25 24 23 46 46 H 1.09001 * 110.59755 * 80.81978 * 25 24 23 47 47 H 1.09005 * 110.03695 * 238.56731 * 26 22 3 48 48 H 1.08996 * 110.03317 * 359.95435 * 26 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5987 1.9839 0.8368 5 7 3.5030 1.4445 0.1325 6 6 3.9036 1.4507 1.5458 7 6 5.4027 1.5711 1.6425 8 6 5.9918 2.8206 1.7091 9 6 7.3653 2.9343 1.7973 10 6 8.1551 1.7922 1.8195 11 8 9.5055 1.9006 1.9066 12 6 10.0104 3.1391 2.0772 13 1 9.3548 3.9971 2.0562 14 6 11.3712 3.3112 2.2798 15 7 12.1698 2.2660 2.3051 16 14 12.0706 5.0270 2.5169 17 1 11.4480 5.6549 3.7100 18 1 13.5399 4.9398 2.7140 19 1 11.7798 5.8503 1.3157 20 6 7.5609 0.5390 1.7474 21 6 6.1865 0.4318 1.6652 22 6 1.6459 2.1229 -1.3125 23 6 2.3067 1.3976 -2.5029 24 6 2.6742 2.5385 -3.4852 25 6 3.1286 3.6748 -2.5358 26 6 2.1678 3.5702 -1.3334 27 1 -0.3634 -1.0229 0.0985 28 1 -0.3633 0.5969 0.8366 29 1 -0.3633 0.4262 -0.9351 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9098 2.2243 -0.3621 33 1 3.5825 0.5226 2.0186 34 1 3.4379 2.2964 2.0518 35 1 5.3770 3.7084 1.6922 36 1 7.8247 3.9103 1.8488 37 1 13.1218 2.3865 2.4465 38 1 8.1727 -0.3510 1.7600 39 1 5.7235 -0.5425 1.6134 40 1 0.5618 2.1151 -1.4258 41 1 3.2038 0.8704 -2.1781 42 1 1.6033 0.7059 -2.9664 43 1 1.8030 2.8442 -4.0644 44 1 3.4882 2.2373 -4.1445 45 1 3.0250 4.6439 -3.0238 46 1 4.1587 3.5181 -2.2156 47 1 1.3371 4.2650 -1.4578 48 1 2.7012 3.7881 -0.4083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382811141.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:13 Heat of formation + Delta-G solvation = -44.251179 kcal Electronic energy + Delta-G solvation = -24730.547233 eV Core-core repulsion = 21363.079351 eV Total energy + Delta-G solvation = -3367.467882 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.85958 -40.24885 -38.45161 -36.31681 -34.44984 -33.83256 -31.77951 -31.06535 -29.49764 -29.36991 -27.49707 -25.92334 -24.67807 -23.59596 -22.51353 -22.01968 -21.26276 -19.84655 -19.66402 -18.86615 -17.35912 -16.71756 -16.44589 -16.33922 -15.97787 -15.81168 -15.49167 -15.25035 -15.09436 -14.78672 -14.38185 -14.21516 -14.11502 -13.93337 -13.83232 -13.57409 -13.05006 -12.91669 -12.64382 -12.48414 -12.36747 -12.30377 -12.15911 -12.07710 -11.96153 -11.91504 -11.74058 -11.49098 -11.35839 -11.30814 -11.16869 -10.99288 -10.77954 -9.77182 -9.24607 -8.88322 -8.47027 -6.15328 0.61015 0.68808 1.34378 1.45231 1.50840 2.17820 2.79276 3.11974 3.45994 3.54050 3.71272 3.74285 3.91005 4.05379 4.06306 4.21022 4.26653 4.33653 4.45096 4.48960 4.61701 4.62270 4.64994 4.68254 4.74674 4.79055 4.81318 4.84606 4.86570 4.97216 5.06678 5.10001 5.13418 5.14619 5.16845 5.26758 5.28956 5.31897 5.39175 5.42632 5.47468 5.55696 5.60850 5.65036 5.71800 5.83069 6.03045 6.20119 6.30037 6.57399 6.97555 7.79008 8.76198 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.002946 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.864214 B = 9500.795607 C =10249.977382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C 0.094 3.906 4 H 0.043 0.957 5 N -0.685 5.685 6 C 0.122 3.878 7 C -0.158 4.158 8 C -0.063 4.063 9 C -0.242 4.242 10 C 0.115 3.885 11 O -0.233 6.233 12 C -0.415 4.415 13 H 0.101 0.899 14 C -0.023 4.023 15 N -0.922 5.922 16 Si 1.018 2.982 17 H -0.257 1.257 18 H -0.271 1.271 19 H -0.257 1.257 20 C -0.206 4.206 21 C -0.047 4.047 22 C -0.090 4.090 23 C -0.115 4.115 24 C -0.124 4.124 25 C -0.127 4.127 26 C -0.124 4.124 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.341 0.659 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.135 0.865 36 H 0.118 0.882 37 H 0.273 0.727 38 H 0.111 0.889 39 H 0.143 0.857 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.052 0.948 47 H 0.072 0.928 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.068 1.348 -7.060 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.015 4.015 4 H 0.061 0.939 5 N -0.319 5.319 6 C -0.006 4.006 7 C -0.159 4.159 8 C -0.082 4.082 9 C -0.261 4.261 10 C 0.064 3.936 11 O -0.140 6.140 12 C -0.491 4.491 13 H 0.118 0.882 14 C -0.220 4.220 15 N -0.560 5.560 16 Si 0.837 3.163 17 H -0.182 1.182 18 H -0.196 1.196 19 H -0.181 1.181 20 C -0.225 4.225 21 C -0.065 4.065 22 C -0.108 4.108 23 C -0.153 4.153 24 C -0.162 4.162 25 C -0.165 4.165 26 C -0.162 4.162 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.153 0.847 36 H 0.135 0.865 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.160 0.840 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.636 0.452 -7.101 25.643 hybrid contribution 0.900 1.426 0.473 1.751 sum -23.736 1.879 -6.629 24.716 Atomic orbital electron populations 1.21775 0.94937 1.01879 1.02008 1.21491 0.95646 0.95708 1.01968 1.21639 0.87018 0.96298 0.96540 0.93867 1.60613 1.09024 1.50835 1.11400 1.20664 0.89192 1.01174 0.89552 1.19639 0.95995 0.92285 1.07934 1.20916 0.92765 0.97814 0.96672 1.21207 0.95110 0.97829 1.11976 1.19931 0.84045 0.95311 0.94291 1.83945 1.16853 1.32208 1.80974 1.21782 0.93035 0.82700 1.51554 0.88156 1.26597 0.95078 1.04464 0.95904 1.70184 1.05109 1.32421 1.48268 0.84659 0.77375 0.74439 0.79813 1.18161 1.19598 1.18111 1.20466 0.95908 0.94435 1.11730 1.20829 0.90838 0.99253 0.95606 1.21988 1.00757 0.93880 0.94209 1.22387 1.00715 0.97362 0.94822 1.22500 1.00830 0.95464 0.97383 1.22368 0.98716 0.99103 0.96307 1.22239 0.99161 0.96752 0.98037 0.92418 0.92782 0.92067 0.91891 0.92880 0.83814 0.90083 0.94254 0.84737 0.86460 0.91835 0.87112 0.83954 0.89380 0.91461 0.91414 0.90919 0.92184 0.91367 0.92873 0.90890 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.55 71.98 0.69 -1.17 16 2 C -0.11 -1.78 5.56 30.59 0.17 -1.61 16 3 C 0.09 1.61 1.67 44.92 0.08 1.69 16 4 H 0.04 0.75 7.67 -2.39 -0.02 0.73 16 5 N -0.69 -14.85 5.27 -495.57 -2.61 -17.46 16 6 C 0.12 2.87 5.67 85.56 0.49 3.36 16 7 C -0.16 -4.93 5.35 -19.83 -0.11 -5.03 16 8 C -0.06 -2.18 9.69 22.25 0.22 -1.96 16 9 C -0.24 -10.64 9.17 22.39 0.21 -10.44 16 10 C 0.11 5.81 6.65 22.58 0.15 5.96 16 11 O -0.23 -14.29 9.76 -22.79 -0.22 -14.52 16 12 C -0.41 -24.48 9.49 67.92 0.64 -23.84 16 13 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 14 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 15 N -0.92 -57.29 13.67 21.62 0.30 -56.99 16 16 Si 1.02 43.19 29.55 68.60 2.03 45.22 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 20 C -0.21 -9.02 9.99 22.39 0.22 -8.79 16 21 C -0.05 -1.62 9.69 22.25 0.22 -1.40 16 22 C -0.09 -1.35 2.53 -10.07 -0.03 -1.38 16 23 C -0.12 -1.90 5.03 31.70 0.16 -1.74 16 24 C -0.12 -1.99 6.91 31.91 0.22 -1.77 16 25 C -0.13 -2.18 6.59 31.67 0.21 -1.97 16 26 C -0.12 -1.95 5.69 31.32 0.18 -1.77 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.68 6.85 -2.39 -0.02 0.67 16 30 H 0.06 1.11 7.06 -2.38 -0.02 1.10 16 31 H 0.05 0.95 7.68 -2.39 -0.02 0.93 16 32 H 0.34 7.90 5.97 -89.69 -0.54 7.36 16 33 H 0.08 1.78 7.64 -2.39 -0.02 1.77 16 34 H 0.04 0.85 7.88 -2.39 -0.02 0.83 16 35 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 36 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 37 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 39 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 40 H 0.09 1.14 6.71 -2.39 -0.02 1.12 16 41 H 0.07 1.39 6.97 -2.38 -0.02 1.38 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.05 1.08 7.80 -2.39 -0.02 1.06 16 47 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.05 0.93 6.85 -2.39 -0.02 0.91 16 Total: -1.00 -67.87 373.69 4.07 -63.80 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.40 Total: 32.68 kcal Atomic # 6 Polarization: -56.90 SS G_CDS: 4.17 Total: -52.73 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -2.31 Total: -74.45 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.22 Total: -14.52 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -67.87 4.07 -63.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382811141.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.548 kcal (2) G-P(sol) polarization free energy of solvation -67.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds