Wall clock time and date at job start Tue Mar 31 2020 10:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47009 * 2 1 4 4 H 1.08999 * 110.01785 * 55.56211 * 3 2 1 5 5 C 1.54269 * 110.03420 * 294.17245 * 3 2 1 6 6 C 1.55024 * 104.13560 * 217.07014 * 5 3 2 7 7 C 1.54886 * 102.75487 * 37.94938 * 6 5 3 8 8 C 1.53879 * 110.03309 * 176.95572 * 3 2 1 9 9 H 1.09004 * 110.03365 * 238.62151 * 8 3 2 10 10 N 1.46899 * 110.02919 * 359.97438 * 8 3 2 11 11 C 1.46900 * 111.00268 * 191.33551 * 10 8 3 12 12 H 1.08999 * 109.46904 * 325.00047 * 11 10 8 13 13 C 1.52996 * 109.47059 * 85.00247 * 11 10 8 14 14 C 1.50702 * 109.47182 * 205.00402 * 11 10 8 15 15 C 1.38300 * 119.92952 * 319.72418 * 14 11 10 16 16 C 1.38101 * 120.06323 * 179.72860 * 15 14 11 17 17 C 1.38877 * 119.93295 * 0.54295 * 16 15 14 18 18 O 1.35750 * 120.07117 * 179.74530 * 17 16 15 19 19 C 1.34822 * 117.00406 * 185.95665 * 18 17 16 20 20 H 1.07999 * 119.99649 * 5.48398 * 19 18 17 21 21 C 1.38659 * 120.00331 * 185.47840 * 19 18 17 22 22 N 1.31552 * 119.99691 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00085 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47157 * 90.00066 * 23 21 19 25 25 H 1.48500 * 109.46941 * 209.99980 * 23 21 19 26 26 H 1.48497 * 109.46832 * 329.99997 * 23 21 19 27 27 C 1.38875 * 119.86159 * 359.73217 * 17 16 15 28 28 C 1.38098 * 119.93235 * 359.97438 * 27 17 16 29 29 H 1.08998 * 109.47193 * 59.99560 * 1 2 3 30 30 H 1.08997 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46802 * 299.99935 * 1 2 3 32 32 H 1.09001 * 109.46802 * 240.00065 * 2 1 3 33 33 H 1.08998 * 109.47193 * 120.00440 * 2 1 3 34 34 H 1.09000 * 110.48452 * 335.73314 * 5 3 2 35 35 H 1.08996 * 110.48914 * 98.38218 * 5 3 2 36 36 H 1.08998 * 110.75876 * 279.63035 * 6 5 3 37 37 H 1.08997 * 110.90315 * 156.33730 * 6 5 3 38 38 H 1.09001 * 110.48863 * 203.37304 * 7 6 5 39 39 H 1.09000 * 110.60144 * 80.78204 * 7 6 5 40 40 H 1.00906 * 111.00349 * 315.29167 * 10 8 3 41 41 H 1.08999 * 109.47426 * 60.00119 * 13 11 10 42 42 H 1.09008 * 109.47084 * 180.02562 * 13 11 10 43 43 H 1.09007 * 109.46972 * 299.99855 * 13 11 10 44 44 H 1.07989 * 119.96558 * 0.02562 * 15 14 11 45 45 H 1.08001 * 120.02961 * 180.27116 * 16 15 14 46 46 H 0.96999 * 120.00086 * 179.97438 * 22 21 19 47 47 H 1.08005 * 120.03261 * 180.02562 * 27 17 16 48 48 H 1.08007 * 119.96737 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6183 1.9873 0.8447 5 6 1.6566 2.1386 -1.3223 6 6 2.8762 3.0402 -1.6429 7 6 4.0747 2.1640 -1.2014 8 6 3.5768 1.4583 0.0768 9 1 3.9009 2.0107 0.9588 10 7 4.0922 0.0836 0.1276 11 6 5.5207 0.0692 0.4694 12 1 6.0093 0.9366 0.0256 13 6 5.6817 0.1158 1.9902 14 6 6.1523 -1.1908 -0.0642 15 6 5.4710 -2.3916 0.0161 16 6 6.0448 -3.5469 -0.4771 17 6 7.3119 -3.5040 -1.0439 18 8 7.8807 -4.6388 -1.5249 19 6 9.1577 -4.5515 -1.9485 20 1 9.7093 -3.6327 -1.8147 21 6 9.7629 -5.6413 -2.5556 22 7 9.0908 -6.7604 -2.7189 23 14 11.5324 -5.5205 -3.1418 24 1 12.4458 -5.9378 -2.0478 25 1 11.7269 -6.4096 -4.3152 26 1 11.8311 -4.1182 -3.5283 27 6 7.9958 -2.2975 -1.1179 28 6 7.4142 -1.1446 -0.6284 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5081 1.4021 -2.1120 35 1 0.7592 2.7427 -1.1891 36 1 2.8378 3.9625 -1.0634 37 1 2.9291 3.2579 -2.7096 38 1 4.9415 2.7868 -0.9801 39 1 4.3186 1.4318 -1.9711 40 1 3.5598 -0.4785 0.7748 41 1 5.1932 -0.7516 2.4341 42 1 6.7418 0.1056 2.2439 43 1 5.2249 1.0272 2.3761 44 1 4.4874 -2.4250 0.4606 45 1 5.5104 -4.4836 -0.4181 46 1 9.5140 -7.5227 -3.1440 47 1 8.9812 -2.2609 -1.5585 48 1 7.9453 -0.2060 -0.6861 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388693795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:27 Heat of formation + Delta-G solvation = -20.443877 kcal Electronic energy + Delta-G solvation = -24838.980365 eV Core-core repulsion = 21472.544845 eV Total energy + Delta-G solvation = -3366.435520 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.66215 -38.82929 -36.97593 -34.81690 -33.23287 -32.22135 -30.53640 -30.03821 -27.86894 -27.69253 -26.34241 -25.33824 -23.06114 -22.59808 -21.83083 -20.73290 -19.85451 -18.91971 -17.84466 -16.95164 -16.16109 -15.97214 -15.06066 -14.62854 -14.54345 -14.44438 -14.36463 -13.87169 -13.60265 -13.44523 -13.31458 -12.93767 -12.67148 -12.58821 -12.48771 -12.33084 -12.00920 -11.64239 -11.45864 -11.34887 -11.26033 -11.17138 -11.08376 -10.90897 -10.72248 -10.67646 -10.57032 -10.53906 -10.44888 -10.33285 -10.26615 -9.29305 -8.77239 -8.24539 -8.07354 -7.07203 -6.40108 -3.98624 2.31036 2.41790 3.15466 3.16094 3.20896 4.00710 4.20852 4.43542 4.48920 4.62999 4.76376 5.09001 5.10284 5.12733 5.17517 5.22808 5.29448 5.37108 5.40431 5.44075 5.48049 5.51706 5.54039 5.63211 5.72643 5.76232 5.79724 5.85917 5.86606 5.93227 5.96453 6.03697 6.05907 6.08770 6.17139 6.20321 6.30109 6.33793 6.37769 6.52249 6.79260 6.95858 7.13510 7.16572 7.37982 7.50832 7.52306 7.54193 7.91760 8.05336 9.05906 9.78052 10.78325 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022548 B = 0.002852 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.478241 B = 9815.570993 C =10072.558474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.088 4.088 4 H 0.065 0.935 5 C -0.113 4.113 6 C -0.125 4.125 7 C -0.116 4.116 8 C 0.086 3.914 9 H 0.037 0.963 10 N -0.672 5.672 11 C 0.138 3.862 12 H 0.075 0.925 13 C -0.176 4.176 14 C -0.163 4.163 15 C -0.053 4.053 16 C -0.194 4.194 17 C 0.152 3.848 18 O -0.181 6.181 19 C -0.390 4.390 20 H 0.090 0.910 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.939 3.061 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.232 4.232 28 C -0.069 4.069 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.340 0.660 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.269 0.731 47 H 0.125 0.875 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.645 17.555 6.083 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.107 4.107 4 H 0.084 0.916 5 C -0.151 4.151 6 C -0.163 4.163 7 C -0.154 4.154 8 C -0.024 4.024 9 H 0.055 0.945 10 N -0.305 5.305 11 C 0.029 3.971 12 H 0.093 0.907 13 C -0.234 4.234 14 C -0.164 4.164 15 C -0.072 4.072 16 C -0.214 4.214 17 C 0.099 3.901 18 O -0.085 6.085 19 C -0.466 4.466 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.764 3.236 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.252 4.252 28 C -0.088 4.088 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.162 0.838 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.125 0.875 45 H 0.132 0.868 46 H 0.079 0.921 47 H 0.142 0.858 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.579 17.042 5.290 21.832 hybrid contribution 0.974 0.321 0.672 1.226 sum -11.605 17.363 5.961 21.718 Atomic orbital electron populations 1.21819 0.96442 1.01429 1.01345 1.21514 0.94784 0.95875 1.02872 1.21872 0.94277 0.96638 0.97942 0.91612 1.22406 0.97330 0.98297 0.97082 1.22474 0.95199 0.97829 1.00788 1.22438 0.96967 0.98185 0.97771 1.22133 0.93730 0.89634 0.96889 0.94519 1.60956 1.02726 1.10445 1.56414 1.20206 0.88230 0.96234 0.92456 0.90712 1.22492 1.02601 1.00830 0.97524 1.19073 0.95738 0.93819 1.07780 1.20289 0.97696 0.91351 0.97857 1.20198 0.95360 0.98726 1.07090 1.19390 0.92064 0.86736 0.91895 1.83989 1.27819 1.27777 1.68888 1.21293 0.85135 1.00834 1.39362 0.89228 1.25268 1.00130 0.94618 0.96545 1.70037 1.36987 1.02378 1.40586 0.85737 0.80689 0.78629 0.78513 1.19946 1.20299 1.19246 1.21107 1.02467 0.92569 1.09029 1.20538 0.94353 0.96884 0.97026 0.92800 0.92875 0.93348 0.90209 0.92357 0.91175 0.92225 0.92046 0.91672 0.92461 0.90027 0.83800 0.92490 0.91979 0.93539 0.87491 0.86809 0.92112 0.85771 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.75 37.16 0.36 -0.87 16 2 C -0.11 -1.03 4.16 -26.73 -0.11 -1.14 16 3 C -0.09 -0.79 2.95 -89.50 -0.26 -1.05 16 4 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 5 C -0.11 -0.97 5.44 -25.00 -0.14 -1.11 16 6 C -0.13 -1.09 6.91 -24.67 -0.17 -1.26 16 7 C -0.12 -1.20 5.64 -25.08 -0.14 -1.34 16 8 C 0.09 0.88 3.10 -66.59 -0.21 0.67 16 9 H 0.04 0.38 7.25 -51.93 -0.38 0.00 16 10 N -0.67 -7.91 4.60 -99.78 -0.46 -8.37 16 11 C 0.14 1.82 2.64 -68.87 -0.18 1.63 16 12 H 0.07 0.98 7.05 -51.93 -0.37 0.62 16 13 C -0.18 -2.06 9.13 37.16 0.34 -1.72 16 14 C -0.16 -2.75 4.96 -104.57 -0.52 -3.27 16 15 C -0.05 -0.96 9.31 -39.61 -0.37 -1.32 16 16 C -0.19 -4.18 9.99 -39.40 -0.39 -4.57 16 17 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 18 O -0.18 -5.26 9.76 0.07 0.00 -5.26 16 19 C -0.39 -11.07 9.44 30.89 0.29 -10.78 16 20 H 0.09 2.36 5.30 -52.49 -0.28 2.08 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.72 13.67 55.48 0.76 -24.96 16 23 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 C -0.23 -5.14 9.13 -39.40 -0.36 -5.50 16 28 C -0.07 -1.28 9.66 -39.61 -0.38 -1.67 16 29 H 0.05 0.42 7.44 -51.93 -0.39 0.03 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.87 7.84 -51.93 -0.41 0.46 16 33 H 0.06 0.53 6.44 -51.93 -0.33 0.19 16 34 H 0.07 0.65 7.79 -51.93 -0.40 0.25 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 39 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 40 H 0.34 3.77 5.21 -39.29 -0.20 3.57 16 41 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 42 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 43 H 0.05 0.47 7.37 -51.93 -0.38 0.09 16 44 H 0.11 1.63 7.25 -52.49 -0.38 1.25 16 45 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 46 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.12 2.77 5.72 -52.48 -0.30 2.47 16 48 H 0.10 1.64 8.03 -52.48 -0.42 1.22 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -29.91 373.61 -9.71 -39.63 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -8.02 Total: 6.38 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -2.60 Total: -28.82 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.30 Total: -33.33 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: 0.00 Total: -5.26 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.91 -9.71 -39.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388693795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.182 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds