Wall clock time and date at job start Tue Mar 31 2020 10:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47009 * 2 1 4 4 H 1.08999 * 110.01785 * 55.56211 * 3 2 1 5 5 C 1.54269 * 110.03420 * 294.17245 * 3 2 1 6 6 C 1.55024 * 104.13560 * 217.07014 * 5 3 2 7 7 C 1.54886 * 102.75487 * 37.94938 * 6 5 3 8 8 C 1.53879 * 110.03309 * 176.95572 * 3 2 1 9 9 H 1.09004 * 110.03365 * 238.62151 * 8 3 2 10 10 N 1.46899 * 110.02919 * 359.97438 * 8 3 2 11 11 C 1.46900 * 111.00268 * 191.33551 * 10 8 3 12 12 H 1.08999 * 109.46904 * 325.00047 * 11 10 8 13 13 C 1.52996 * 109.47059 * 85.00247 * 11 10 8 14 14 C 1.50702 * 109.47182 * 205.00402 * 11 10 8 15 15 C 1.38300 * 119.92952 * 319.72418 * 14 11 10 16 16 C 1.38101 * 120.06323 * 179.72860 * 15 14 11 17 17 C 1.38877 * 119.93295 * 0.54295 * 16 15 14 18 18 O 1.35750 * 120.07117 * 179.74530 * 17 16 15 19 19 C 1.34822 * 117.00406 * 185.95665 * 18 17 16 20 20 H 1.07999 * 119.99649 * 5.48398 * 19 18 17 21 21 C 1.38659 * 120.00331 * 185.47840 * 19 18 17 22 22 N 1.31552 * 119.99691 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00085 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47157 * 90.00066 * 23 21 19 25 25 H 1.48500 * 109.46941 * 209.99980 * 23 21 19 26 26 H 1.48497 * 109.46832 * 329.99997 * 23 21 19 27 27 C 1.38875 * 119.86159 * 359.73217 * 17 16 15 28 28 C 1.38098 * 119.93235 * 359.97438 * 27 17 16 29 29 H 1.08998 * 109.47193 * 59.99560 * 1 2 3 30 30 H 1.08997 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46802 * 299.99935 * 1 2 3 32 32 H 1.09001 * 109.46802 * 240.00065 * 2 1 3 33 33 H 1.08998 * 109.47193 * 120.00440 * 2 1 3 34 34 H 1.09000 * 110.48452 * 335.73314 * 5 3 2 35 35 H 1.08996 * 110.48914 * 98.38218 * 5 3 2 36 36 H 1.08998 * 110.75876 * 279.63035 * 6 5 3 37 37 H 1.08997 * 110.90315 * 156.33730 * 6 5 3 38 38 H 1.09001 * 110.48863 * 203.37304 * 7 6 5 39 39 H 1.09000 * 110.60144 * 80.78204 * 7 6 5 40 40 H 1.00906 * 111.00349 * 315.29167 * 10 8 3 41 41 H 1.08999 * 109.47426 * 60.00119 * 13 11 10 42 42 H 1.09008 * 109.47084 * 180.02562 * 13 11 10 43 43 H 1.09007 * 109.46972 * 299.99855 * 13 11 10 44 44 H 1.07989 * 119.96558 * 0.02562 * 15 14 11 45 45 H 1.08001 * 120.02961 * 180.27116 * 16 15 14 46 46 H 0.96999 * 120.00086 * 179.97438 * 22 21 19 47 47 H 1.08005 * 120.03261 * 180.02562 * 27 17 16 48 48 H 1.08007 * 119.96737 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6183 1.9873 0.8447 5 6 1.6566 2.1386 -1.3223 6 6 2.8762 3.0402 -1.6429 7 6 4.0747 2.1640 -1.2014 8 6 3.5768 1.4583 0.0768 9 1 3.9009 2.0107 0.9588 10 7 4.0922 0.0836 0.1276 11 6 5.5207 0.0692 0.4694 12 1 6.0093 0.9366 0.0256 13 6 5.6817 0.1158 1.9902 14 6 6.1523 -1.1908 -0.0642 15 6 5.4710 -2.3916 0.0161 16 6 6.0448 -3.5469 -0.4771 17 6 7.3119 -3.5040 -1.0439 18 8 7.8807 -4.6388 -1.5249 19 6 9.1577 -4.5515 -1.9485 20 1 9.7093 -3.6327 -1.8147 21 6 9.7629 -5.6413 -2.5556 22 7 9.0908 -6.7604 -2.7189 23 14 11.5324 -5.5205 -3.1418 24 1 12.4458 -5.9378 -2.0478 25 1 11.7269 -6.4096 -4.3152 26 1 11.8311 -4.1182 -3.5283 27 6 7.9958 -2.2975 -1.1179 28 6 7.4142 -1.1446 -0.6284 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5081 1.4021 -2.1120 35 1 0.7592 2.7427 -1.1891 36 1 2.8378 3.9625 -1.0634 37 1 2.9291 3.2579 -2.7096 38 1 4.9415 2.7868 -0.9801 39 1 4.3186 1.4318 -1.9711 40 1 3.5598 -0.4785 0.7748 41 1 5.1932 -0.7516 2.4341 42 1 6.7418 0.1056 2.2439 43 1 5.2249 1.0272 2.3761 44 1 4.4874 -2.4250 0.4606 45 1 5.5104 -4.4836 -0.4181 46 1 9.5140 -7.5227 -3.1440 47 1 8.9812 -2.2609 -1.5585 48 1 7.9453 -0.2060 -0.6861 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388693795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:26 Heat of formation + Delta-G solvation = -36.099644 kcal Electronic energy + Delta-G solvation = -24839.659250 eV Core-core repulsion = 21472.544845 eV Total energy + Delta-G solvation = -3367.114405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.91644 -40.16800 -38.52461 -36.06060 -34.23102 -33.93659 -31.87463 -31.47665 -29.28857 -28.39800 -27.33832 -27.17719 -24.11056 -23.67761 -23.41946 -21.75493 -21.05103 -19.91815 -19.52424 -18.79172 -17.18344 -16.89541 -16.41599 -16.16082 -15.86545 -15.58445 -15.45985 -15.20033 -15.04744 -14.98023 -14.34532 -14.13405 -13.99107 -13.92686 -13.51914 -13.36463 -13.29782 -13.09120 -12.86630 -12.51682 -12.27086 -12.21993 -12.14154 -12.07685 -12.01588 -11.85003 -11.71910 -11.50126 -11.34383 -11.31466 -11.18749 -11.11604 -10.76258 -9.71934 -9.18487 -8.81593 -8.45730 -6.13401 0.65425 0.77278 1.34602 1.44332 1.52295 2.18657 2.84094 3.16381 3.35951 3.55678 3.70733 3.76002 4.01279 4.04887 4.13456 4.22559 4.37104 4.38644 4.42224 4.46794 4.53713 4.60896 4.64405 4.72913 4.75751 4.78179 4.84833 4.88867 4.92743 4.97032 5.10610 5.12409 5.14121 5.17564 5.24151 5.25998 5.28844 5.31428 5.34789 5.37182 5.49232 5.53285 5.64919 5.66932 5.76092 5.86255 6.05257 6.26566 6.36364 6.63205 6.99261 7.82252 8.78023 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022548 B = 0.002852 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.478241 B = 9815.570993 C =10072.558474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.084 4.084 4 H 0.079 0.921 5 C -0.112 4.112 6 C -0.121 4.121 7 C -0.118 4.118 8 C 0.088 3.912 9 H 0.047 0.953 10 N -0.681 5.681 11 C 0.143 3.857 12 H 0.082 0.918 13 C -0.171 4.171 14 C -0.137 4.137 15 C -0.046 4.046 16 C -0.206 4.206 17 C 0.109 3.891 18 O -0.236 6.236 19 C -0.412 4.412 20 H 0.099 0.901 21 C -0.024 4.024 22 N -0.923 5.923 23 Si 1.018 2.982 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.253 1.253 27 C -0.241 4.241 28 C -0.070 4.070 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.345 0.655 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.140 0.860 45 H 0.109 0.891 46 H 0.272 0.728 47 H 0.115 0.885 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.415 21.030 7.455 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.103 4.103 4 H 0.098 0.902 5 C -0.150 4.150 6 C -0.159 4.159 7 C -0.156 4.156 8 C -0.022 4.022 9 H 0.065 0.935 10 N -0.315 5.315 11 C 0.033 3.967 12 H 0.100 0.900 13 C -0.229 4.229 14 C -0.138 4.138 15 C -0.064 4.064 16 C -0.225 4.225 17 C 0.059 3.941 18 O -0.143 6.143 19 C -0.488 4.488 20 H 0.116 0.884 21 C -0.221 4.221 22 N -0.561 5.561 23 Si 0.837 3.163 24 H -0.188 1.188 25 H -0.196 1.196 26 H -0.177 1.177 27 C -0.260 4.260 28 C -0.089 4.089 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.168 0.832 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.158 0.842 45 H 0.127 0.873 46 H 0.081 0.919 47 H 0.133 0.867 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.386 20.569 6.690 25.437 hybrid contribution 0.959 -0.505 0.378 1.148 sum -12.427 20.064 7.068 24.636 Atomic orbital electron populations 1.21790 0.95599 1.01502 1.01885 1.21457 0.95537 0.95944 1.01882 1.21864 0.93352 0.96533 0.98551 0.90245 1.22396 0.97913 0.98148 0.96553 1.22465 0.94339 0.98035 1.01072 1.22428 0.97941 0.97988 0.97225 1.22179 0.94511 0.88456 0.97015 0.93507 1.60863 1.01933 1.11921 1.56791 1.20152 0.89023 0.93933 0.93579 0.89959 1.22423 1.02663 1.02066 0.95782 1.19646 0.94695 0.95249 1.04182 1.20633 0.98806 0.90348 0.96614 1.20454 0.94632 1.00117 1.07325 1.19916 0.93629 0.86901 0.93610 1.83943 1.28502 1.30217 1.71628 1.21782 0.85716 1.01585 1.39703 0.88363 1.26583 1.05291 0.93872 0.96393 1.70186 1.39542 1.03544 1.42839 0.84598 0.74138 0.79349 0.78187 1.18768 1.19560 1.17699 1.21197 1.02241 0.93058 1.09550 1.20903 0.95091 0.96849 0.96030 0.92691 0.93114 0.92341 0.92378 0.92090 0.92438 0.90841 0.90688 0.91667 0.92035 0.92555 0.83172 0.92449 0.92354 0.91305 0.84250 0.87306 0.91896 0.86716 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.75 71.98 0.70 -1.38 16 2 C -0.11 -1.76 4.16 30.59 0.13 -1.63 16 3 C -0.08 -1.23 2.95 -10.07 -0.03 -1.26 16 4 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 5 C -0.11 -1.63 5.44 31.72 0.17 -1.46 16 6 C -0.12 -1.78 6.91 31.93 0.22 -1.56 16 7 C -0.12 -2.14 5.64 31.67 0.18 -1.96 16 8 C 0.09 1.49 3.10 45.64 0.14 1.63 16 9 H 0.05 0.74 7.25 -2.38 -0.02 0.72 16 10 N -0.68 -13.92 4.60 -469.60 -2.16 -16.08 16 11 C 0.14 3.25 2.64 44.17 0.12 3.37 16 12 H 0.08 1.83 7.05 -2.39 -0.02 1.82 16 13 C -0.17 -3.30 9.13 71.98 0.66 -2.64 16 14 C -0.14 -4.30 4.96 -19.83 -0.10 -4.40 16 15 C -0.05 -1.58 9.31 22.25 0.21 -1.37 16 16 C -0.21 -9.09 9.99 22.39 0.22 -8.87 16 17 C 0.11 5.63 6.65 22.58 0.15 5.78 16 18 O -0.24 -14.65 9.76 -22.67 -0.22 -14.87 16 19 C -0.41 -24.64 9.44 67.92 0.64 -23.99 16 20 H 0.10 5.42 5.30 -2.91 -0.02 5.41 16 21 C -0.02 -1.42 5.49 84.84 0.47 -0.95 16 22 N -0.92 -57.86 13.67 21.61 0.30 -57.56 16 23 Si 1.02 43.79 29.55 68.60 2.03 45.81 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 27 C -0.24 -10.88 9.13 22.39 0.20 -10.67 16 28 C -0.07 -2.50 9.66 22.25 0.21 -2.28 16 29 H 0.05 0.74 7.44 -2.39 -0.02 0.72 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.19 7.84 -2.39 -0.02 1.17 16 33 H 0.06 0.93 6.44 -2.39 -0.02 0.91 16 34 H 0.06 0.98 7.79 -2.39 -0.02 0.96 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 1.05 8.12 -2.39 -0.02 1.04 16 39 H 0.06 1.32 8.05 -2.39 -0.02 1.30 16 40 H 0.35 6.48 5.21 -89.69 -0.47 6.01 16 41 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 42 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.07 1.07 7.37 -2.38 -0.02 1.06 16 44 H 0.14 3.88 7.25 -2.92 -0.02 3.86 16 45 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 46 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 47 H 0.12 5.29 5.72 -2.91 -0.02 5.28 16 48 H 0.14 3.91 8.03 -2.91 -0.02 3.89 16 Total: -1.00 -69.87 373.61 4.70 -65.17 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.47 Total: 31.17 kcal Atomic # 6 Polarization: -57.94 SS G_CDS: 4.30 Total: -53.64 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -1.87 Total: -73.64 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.22 Total: -14.87 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -69.87 4.70 -65.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388693795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.071 kcal (2) G-P(sol) polarization free energy of solvation -69.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds