Wall clock time and date at job start Tue Mar 31 2020 10:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47134 * 2 1 4 4 H 1.08998 * 109.46851 * 305.00121 * 3 2 1 5 5 C 1.52999 * 109.47062 * 64.99818 * 3 2 1 6 6 C 1.53004 * 109.47280 * 59.99831 * 5 3 2 7 7 C 1.53008 * 109.46752 * 60.00177 * 6 5 3 8 8 C 1.52995 * 109.46737 * 299.99997 * 7 6 5 9 9 H 1.09000 * 109.47548 * 300.00253 * 8 7 6 10 10 C 1.53007 * 109.47086 * 180.02562 * 8 7 6 11 11 N 1.46504 * 109.46886 * 64.99848 * 10 8 7 12 12 C 1.39783 * 119.99543 * 180.02562 * 11 10 8 13 13 C 1.38950 * 119.99928 * 180.02562 * 12 11 10 14 14 C 1.38017 * 119.98849 * 179.97438 * 13 12 11 15 15 C 1.38897 * 120.00880 * 0.02562 * 14 13 12 16 16 O 1.35798 * 119.99304 * 179.97438 * 15 14 13 17 17 C 1.34809 * 116.99825 * 5.54435 * 16 15 14 18 18 H 1.07995 * 120.00470 * 354.93711 * 17 16 15 19 19 C 1.38627 * 119.99376 * 174.94245 * 17 16 15 20 20 N 1.31579 * 119.99647 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00470 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46687 * 270.00230 * 21 19 17 23 23 H 1.48497 * 109.47086 * 29.99624 * 21 19 17 24 24 H 1.48497 * 109.47452 * 150.00146 * 21 19 17 25 25 C 1.38904 * 120.00912 * 0.27016 * 15 14 13 26 26 C 1.38008 * 120.00354 * 359.45623 * 25 15 14 27 27 C 1.52995 * 109.47463 * 60.00279 * 8 7 6 28 28 H 1.09000 * 109.47318 * 59.99973 * 1 2 3 29 29 H 1.08999 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47114 * 300.00294 * 1 2 3 31 31 H 1.08993 * 109.47339 * 239.99891 * 2 1 3 32 32 H 1.08997 * 109.46832 * 119.99953 * 2 1 3 33 33 H 1.09000 * 109.47419 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.47599 * 300.00228 * 5 3 2 35 35 H 1.09000 * 109.47283 * 179.97438 * 6 5 3 36 36 H 1.08993 * 109.47126 * 300.00051 * 6 5 3 37 37 H 1.08994 * 109.46880 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.46844 * 59.99588 * 7 6 5 39 39 H 1.08997 * 109.46591 * 304.99893 * 10 8 7 40 40 H 1.08996 * 109.47108 * 184.99921 * 10 8 7 41 41 H 0.96996 * 120.00075 * 0.02562 * 11 10 8 42 42 H 1.07993 * 120.00753 * 359.97438 * 13 12 11 43 43 H 1.08004 * 119.99526 * 180.02562 * 14 13 12 44 44 H 0.97001 * 120.00210 * 180.02562 * 20 19 17 45 45 H 1.07999 * 119.99372 * 179.70642 * 25 15 14 46 46 H 1.08002 * 119.99877 * 180.29494 * 26 25 15 47 47 H 1.08999 * 109.47375 * 59.99928 * 27 8 7 48 48 H 1.09004 * 109.47673 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.2452 1.3699 2.4890 7 6 3.7701 1.3718 2.3633 8 6 4.1748 0.6878 1.0560 9 1 3.8115 -0.3399 1.0559 10 6 5.6997 0.6890 0.9305 11 7 6.2779 -0.1355 1.9946 12 6 7.6645 -0.2864 2.0864 13 6 8.2130 -1.0689 3.0952 14 6 9.5821 -1.2182 3.1853 15 6 10.4116 -0.5860 2.2680 16 8 11.7587 -0.7327 2.3572 17 6 12.2203 -1.5947 3.2852 18 1 11.5336 -2.0693 3.9704 19 6 13.5766 -1.8716 3.3601 20 7 14.0272 -2.7126 4.2662 21 14 14.7643 -1.0511 2.1747 22 1 14.9124 -1.8930 0.9604 23 1 14.2378 0.2832 1.7906 24 1 16.0870 -0.8913 2.8305 25 6 9.8638 0.2012 1.2631 26 6 8.4946 0.3462 1.1692 27 6 3.5648 1.4443 -0.1256 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9989 3.1541 1.3076 34 1 0.5489 2.1252 1.3970 35 1 1.9572 1.8575 3.4204 36 1 1.8819 0.3423 2.4890 37 1 4.2047 0.8332 3.2054 38 1 4.1333 2.3995 2.3633 39 1 6.0707 1.7100 1.0198 40 1 5.9848 0.2824 -0.0397 41 1 5.6985 -0.5766 2.6354 42 1 7.5681 -1.5601 3.8087 43 1 10.0085 -1.8266 3.9691 44 1 14.9762 -2.9061 4.3189 45 1 10.5093 0.6964 0.5529 46 1 8.0686 0.9544 0.3850 47 1 3.9281 2.4720 -0.1257 48 1 3.8535 0.9573 -1.0571 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394512226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:34 Heat of formation + Delta-G solvation = -30.756318 kcal Electronic energy + Delta-G solvation = -24213.356239 eV Core-core repulsion = 20846.473538 eV Total energy + Delta-G solvation = -3366.882701 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.95262 -39.04304 -37.20370 -35.09731 -33.10086 -32.19941 -31.45320 -30.23704 -29.70050 -27.58414 -25.74105 -24.55991 -23.58486 -22.68229 -22.22237 -21.09003 -20.44796 -18.68555 -17.68529 -17.28797 -16.63028 -15.74144 -15.54274 -15.19782 -14.85325 -14.47377 -14.22009 -13.86586 -13.81821 -13.56015 -13.53160 -13.40999 -12.82125 -12.66920 -12.43692 -12.42140 -12.36273 -12.07253 -12.02997 -11.76529 -11.53475 -11.39441 -11.33690 -11.19044 -10.95217 -10.78261 -10.58229 -10.37974 -10.21166 -10.19484 -10.06924 -9.26180 -9.17155 -8.51265 -8.21401 -6.45974 -6.28224 -3.92422 2.15198 2.51176 3.29804 3.33264 3.48770 3.80889 4.32846 4.34715 4.36979 4.42362 4.63491 4.74322 4.86860 4.89432 4.97024 5.05183 5.07828 5.14409 5.23005 5.24665 5.27608 5.35992 5.44647 5.47762 5.58112 5.61157 5.64189 5.65299 5.71322 5.75898 5.78720 5.83627 5.90611 5.95654 6.03923 6.08727 6.11087 6.17806 6.21271 6.27334 6.48617 6.81694 6.85591 7.04461 7.38056 7.52241 7.82785 7.96739 8.13652 8.25375 9.08488 9.75155 10.80400 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.040258 B = 0.002251 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.352479 B =12434.498058 C =12663.091421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.086 4.086 4 H 0.068 0.932 5 C -0.115 4.115 6 C -0.122 4.122 7 C -0.112 4.112 8 C -0.097 4.097 9 H 0.076 0.924 10 C 0.138 3.862 11 N -0.758 5.758 12 C 0.134 3.866 13 C -0.145 4.145 14 C -0.175 4.175 15 C 0.116 3.884 16 O -0.229 6.229 17 C -0.383 4.383 18 H 0.103 0.897 19 C 0.059 3.941 20 N -0.888 5.888 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.261 1.261 24 H -0.285 1.285 25 C -0.149 4.149 26 C -0.150 4.150 27 C -0.107 4.107 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.390 0.610 42 H 0.108 0.892 43 H 0.133 0.867 44 H 0.276 0.724 45 H 0.116 0.884 46 H 0.111 0.889 47 H 0.064 0.936 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.243 8.270 -7.588 28.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.104 4.104 4 H 0.086 0.914 5 C -0.153 4.153 6 C -0.159 4.159 7 C -0.150 4.150 8 C -0.116 4.116 9 H 0.095 0.905 10 C 0.012 3.988 11 N -0.394 5.394 12 C 0.035 3.965 13 C -0.167 4.167 14 C -0.195 4.195 15 C 0.065 3.935 16 O -0.135 6.135 17 C -0.459 4.459 18 H 0.120 0.880 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.185 1.185 24 H -0.210 1.210 25 C -0.169 4.169 26 C -0.172 4.172 27 C -0.145 4.145 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.224 0.776 42 H 0.126 0.874 43 H 0.151 0.849 44 H 0.087 0.913 45 H 0.134 0.866 46 H 0.129 0.871 47 H 0.083 0.917 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.862 8.395 -7.782 28.282 hybrid contribution 0.359 -0.026 -0.058 0.365 sum -25.503 8.369 -7.840 27.963 Atomic orbital electron populations 1.21823 0.96163 1.01414 1.01701 1.21684 0.95622 0.96576 1.02290 1.21126 0.95318 0.96205 0.97757 0.91369 1.21591 1.00129 0.99106 0.94457 1.21584 0.95677 1.00776 0.97875 1.21565 0.95327 1.01017 0.97090 1.21376 0.94360 1.00347 0.95494 0.90535 1.21170 0.91773 0.94810 0.90997 1.44260 1.03057 1.57432 1.34611 1.17457 0.83140 0.99146 0.96735 1.20286 0.94717 1.02504 0.99239 1.21107 0.92647 1.04096 1.01657 1.18961 0.83936 0.96141 0.94497 1.83573 1.16594 1.58421 1.54935 1.20702 0.93729 1.20825 1.10674 0.87972 1.24429 0.96564 0.96057 0.97254 1.69663 1.15497 1.33777 1.33856 0.86180 0.79255 0.80918 0.80501 1.20097 1.18478 1.21038 1.20011 0.94014 1.03415 0.99476 1.20151 0.92328 1.04203 1.00517 1.21539 0.94684 1.00611 0.97671 0.92989 0.93004 0.92571 0.92154 0.91275 0.92137 0.92020 0.92265 0.91740 0.91825 0.91915 0.93136 0.93160 0.77596 0.87434 0.84931 0.91349 0.86618 0.87062 0.91720 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.67 37.16 0.36 -0.54 16 2 C -0.12 -0.80 4.69 -26.73 -0.13 -0.93 16 3 C -0.09 -0.55 2.66 -90.62 -0.24 -0.79 16 4 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 5 C -0.12 -0.74 5.21 -26.73 -0.14 -0.88 16 6 C -0.12 -0.84 5.65 -26.72 -0.15 -0.99 16 7 C -0.11 -0.91 5.08 -26.73 -0.14 -1.04 16 8 C -0.10 -0.79 1.95 -90.62 -0.18 -0.97 16 9 H 0.08 0.65 6.54 -51.93 -0.34 0.31 16 10 C 0.14 1.47 4.30 -4.04 -0.02 1.45 16 11 N -0.76 -9.81 5.46 -58.58 -0.32 -10.13 16 12 C 0.13 2.26 6.66 -83.71 -0.56 1.70 16 13 C -0.15 -2.68 9.89 -39.40 -0.39 -3.07 16 14 C -0.18 -3.87 9.16 -39.42 -0.36 -4.23 16 15 C 0.12 2.75 6.65 -39.09 -0.26 2.49 16 16 O -0.23 -6.22 8.58 -0.04 0.00 -6.22 16 17 C -0.38 -11.10 9.94 30.88 0.31 -10.79 16 18 H 0.10 3.01 5.43 -52.49 -0.28 2.73 16 19 C 0.06 1.69 5.49 -17.52 -0.10 1.59 16 20 N -0.89 -26.36 13.96 55.48 0.77 -25.58 16 21 Si 0.91 22.35 28.62 -169.99 -4.86 17.49 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 C -0.15 -3.04 9.98 -39.42 -0.39 -3.44 16 26 C -0.15 -2.63 9.30 -39.41 -0.37 -2.99 16 27 C -0.11 -0.77 4.73 -26.74 -0.13 -0.90 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.48 4.83 -51.93 -0.25 0.23 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.45 6.32 -51.93 -0.33 0.12 16 37 H 0.06 0.56 7.18 -51.93 -0.37 0.18 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.57 7.94 -51.93 -0.41 0.15 16 40 H 0.05 0.56 7.95 -51.93 -0.41 0.15 16 41 H 0.39 4.49 7.67 -40.82 -0.31 4.18 16 42 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.13 3.07 5.63 -52.48 -0.30 2.78 16 44 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 46 H 0.11 1.67 6.73 -52.49 -0.35 1.31 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -30.00 366.02 -9.60 -39.59 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.83 Total: 3.67 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -2.87 Total: -24.34 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.45 Total: -35.71 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: 0.00 Total: -6.22 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.86 Total: 17.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.00 -9.60 -39.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394512226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.838 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds