Wall clock time and date at job start Tue Mar 31 2020 10:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47134 * 2 1 4 4 H 1.08998 * 109.46851 * 305.00121 * 3 2 1 5 5 C 1.52999 * 109.47062 * 64.99818 * 3 2 1 6 6 C 1.53004 * 109.47280 * 59.99831 * 5 3 2 7 7 C 1.53008 * 109.46752 * 60.00177 * 6 5 3 8 8 C 1.52995 * 109.46737 * 299.99997 * 7 6 5 9 9 H 1.09000 * 109.47548 * 300.00253 * 8 7 6 10 10 C 1.53007 * 109.47086 * 180.02562 * 8 7 6 11 11 N 1.46504 * 109.46886 * 64.99848 * 10 8 7 12 12 C 1.39783 * 119.99543 * 180.02562 * 11 10 8 13 13 C 1.38950 * 119.99928 * 180.02562 * 12 11 10 14 14 C 1.38017 * 119.98849 * 179.97438 * 13 12 11 15 15 C 1.38897 * 120.00880 * 0.02562 * 14 13 12 16 16 O 1.35798 * 119.99304 * 179.97438 * 15 14 13 17 17 C 1.34809 * 116.99825 * 5.54435 * 16 15 14 18 18 H 1.07995 * 120.00470 * 354.93711 * 17 16 15 19 19 C 1.38627 * 119.99376 * 174.94245 * 17 16 15 20 20 N 1.31579 * 119.99647 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00470 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46687 * 270.00230 * 21 19 17 23 23 H 1.48497 * 109.47086 * 29.99624 * 21 19 17 24 24 H 1.48497 * 109.47452 * 150.00146 * 21 19 17 25 25 C 1.38904 * 120.00912 * 0.27016 * 15 14 13 26 26 C 1.38008 * 120.00354 * 359.45623 * 25 15 14 27 27 C 1.52995 * 109.47463 * 60.00279 * 8 7 6 28 28 H 1.09000 * 109.47318 * 59.99973 * 1 2 3 29 29 H 1.08999 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47114 * 300.00294 * 1 2 3 31 31 H 1.08993 * 109.47339 * 239.99891 * 2 1 3 32 32 H 1.08997 * 109.46832 * 119.99953 * 2 1 3 33 33 H 1.09000 * 109.47419 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.47599 * 300.00228 * 5 3 2 35 35 H 1.09000 * 109.47283 * 179.97438 * 6 5 3 36 36 H 1.08993 * 109.47126 * 300.00051 * 6 5 3 37 37 H 1.08994 * 109.46880 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.46844 * 59.99588 * 7 6 5 39 39 H 1.08997 * 109.46591 * 304.99893 * 10 8 7 40 40 H 1.08996 * 109.47108 * 184.99921 * 10 8 7 41 41 H 0.96996 * 120.00075 * 0.02562 * 11 10 8 42 42 H 1.07993 * 120.00753 * 359.97438 * 13 12 11 43 43 H 1.08004 * 119.99526 * 180.02562 * 14 13 12 44 44 H 0.97001 * 120.00210 * 180.02562 * 20 19 17 45 45 H 1.07999 * 119.99372 * 179.70642 * 25 15 14 46 46 H 1.08002 * 119.99877 * 180.29494 * 26 25 15 47 47 H 1.08999 * 109.47375 * 59.99928 * 27 8 7 48 48 H 1.09004 * 109.47673 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.2452 1.3699 2.4890 7 6 3.7701 1.3718 2.3633 8 6 4.1748 0.6878 1.0560 9 1 3.8115 -0.3399 1.0559 10 6 5.6997 0.6890 0.9305 11 7 6.2779 -0.1355 1.9946 12 6 7.6645 -0.2864 2.0864 13 6 8.2130 -1.0689 3.0952 14 6 9.5821 -1.2182 3.1853 15 6 10.4116 -0.5860 2.2680 16 8 11.7587 -0.7327 2.3572 17 6 12.2203 -1.5947 3.2852 18 1 11.5336 -2.0693 3.9704 19 6 13.5766 -1.8716 3.3601 20 7 14.0272 -2.7126 4.2662 21 14 14.7643 -1.0511 2.1747 22 1 14.9124 -1.8930 0.9604 23 1 14.2378 0.2832 1.7906 24 1 16.0870 -0.8913 2.8305 25 6 9.8638 0.2012 1.2631 26 6 8.4946 0.3462 1.1692 27 6 3.5648 1.4443 -0.1256 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9989 3.1541 1.3076 34 1 0.5489 2.1252 1.3970 35 1 1.9572 1.8575 3.4204 36 1 1.8819 0.3423 2.4890 37 1 4.2047 0.8332 3.2054 38 1 4.1333 2.3995 2.3633 39 1 6.0707 1.7100 1.0198 40 1 5.9848 0.2824 -0.0397 41 1 5.6985 -0.5766 2.6354 42 1 7.5681 -1.5601 3.8087 43 1 10.0085 -1.8266 3.9691 44 1 14.9762 -2.9061 4.3189 45 1 10.5093 0.6964 0.5529 46 1 8.0686 0.9544 0.3850 47 1 3.9281 2.4720 -0.1257 48 1 3.8535 0.9573 -1.0571 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394512226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:33 Heat of formation + Delta-G solvation = -46.102320 kcal Electronic energy + Delta-G solvation = -24214.021692 eV Core-core repulsion = 20846.473538 eV Total energy + Delta-G solvation = -3367.548153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.89895 -40.40877 -38.75459 -36.22740 -34.39684 -33.79551 -32.28746 -31.75980 -30.36472 -28.94095 -27.26406 -25.91440 -24.27097 -23.77317 -23.11500 -22.26892 -21.70905 -19.62578 -19.28328 -19.03081 -17.87434 -16.88093 -16.46796 -16.14920 -15.80507 -15.69164 -15.52232 -15.34919 -15.17190 -14.93705 -14.46062 -14.29973 -14.16050 -13.99858 -13.83538 -13.62534 -13.22901 -13.11637 -12.96003 -12.86550 -12.61727 -12.54063 -12.39594 -12.26050 -11.99022 -11.88173 -11.79207 -11.48040 -11.20221 -11.00461 -10.92829 -10.80047 -10.76071 -10.24541 -9.79253 -8.42746 -7.95937 -6.10291 0.56897 0.89601 1.33540 1.38457 1.55187 2.33379 2.67360 2.85412 3.17842 3.31103 3.72950 3.77863 3.83662 4.11110 4.16692 4.17033 4.28452 4.32621 4.40971 4.50437 4.55850 4.58065 4.61158 4.68388 4.72959 4.80820 4.84574 4.85293 4.91863 4.97617 4.99914 5.11313 5.21884 5.22204 5.24586 5.24809 5.29183 5.34349 5.37742 5.47127 5.50230 5.56202 5.56673 5.63550 5.70256 5.85159 5.87006 6.15606 6.62802 6.92939 7.02906 7.73629 8.69610 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.040258 B = 0.002251 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.352479 B =12434.498058 C =12663.091421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.082 4.082 4 H 0.073 0.927 5 C -0.114 4.114 6 C -0.119 4.119 7 C -0.111 4.111 8 C -0.087 4.087 9 H 0.078 0.922 10 C 0.132 3.868 11 N -0.744 5.744 12 C 0.161 3.839 13 C -0.153 4.153 14 C -0.187 4.187 15 C 0.064 3.936 16 O -0.255 6.255 17 C -0.390 4.390 18 H 0.077 0.923 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.972 3.028 22 H -0.267 1.267 23 H -0.264 1.264 24 H -0.269 1.269 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.105 4.105 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.401 0.599 42 H 0.133 0.867 43 H 0.107 0.893 44 H 0.282 0.718 45 H 0.128 0.872 46 H 0.147 0.853 47 H 0.065 0.935 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.776 9.799 -9.459 31.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.101 4.101 4 H 0.091 0.909 5 C -0.151 4.151 6 C -0.156 4.156 7 C -0.149 4.149 8 C -0.106 4.106 9 H 0.096 0.904 10 C 0.008 3.992 11 N -0.378 5.378 12 C 0.059 3.941 13 C -0.175 4.175 14 C -0.207 4.207 15 C 0.016 3.984 16 O -0.164 6.164 17 C -0.467 4.467 18 H 0.095 0.905 19 C -0.194 4.194 20 N -0.573 5.573 21 Si 0.795 3.205 22 H -0.192 1.192 23 H -0.188 1.188 24 H -0.194 1.194 25 C -0.162 4.162 26 C -0.171 4.171 27 C -0.143 4.143 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.236 0.764 42 H 0.150 0.850 43 H 0.125 0.875 44 H 0.091 0.909 45 H 0.146 0.854 46 H 0.164 0.836 47 H 0.084 0.916 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -28.484 9.937 -9.662 31.677 hybrid contribution 0.733 -0.435 0.486 0.981 sum -27.751 9.502 -9.176 30.735 Atomic orbital electron populations 1.21814 0.95735 1.01531 1.01944 1.21668 0.96016 0.96455 1.01937 1.21101 0.94761 0.96258 0.97962 0.90881 1.21580 1.00498 0.98908 0.94126 1.21556 0.94828 1.01009 0.98257 1.21547 0.96140 1.00529 0.96681 1.21288 0.92516 1.00680 0.96084 0.90401 1.21384 0.93329 0.94319 0.90134 1.44402 1.01472 1.56830 1.35124 1.17584 0.85012 0.96535 0.94926 1.20460 0.93416 1.03141 1.00484 1.21069 0.94340 1.04164 1.01080 1.19459 0.83055 0.98973 0.96927 1.83500 1.18639 1.59140 1.55106 1.20670 0.93901 1.21221 1.10928 0.90505 1.25272 0.98172 0.96879 0.99125 1.69752 1.16193 1.35617 1.35752 0.85186 0.77303 0.79546 0.78459 1.19219 1.18806 1.19409 1.20292 0.95486 1.02025 0.98366 1.20485 0.91147 1.04155 1.01272 1.21527 0.95124 1.00494 0.97173 0.92706 0.93000 0.92369 0.92398 0.91705 0.92229 0.91412 0.92119 0.91599 0.92512 0.92405 0.92862 0.92739 0.76391 0.84963 0.87491 0.90871 0.85398 0.83583 0.91587 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 71.98 0.70 -0.75 16 2 C -0.12 -1.29 4.69 30.59 0.14 -1.15 16 3 C -0.08 -0.84 2.66 -10.79 -0.03 -0.87 16 4 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 5 C -0.11 -1.16 5.21 30.60 0.16 -1.00 16 6 C -0.12 -1.35 5.65 30.60 0.17 -1.18 16 7 C -0.11 -1.49 5.08 30.60 0.16 -1.34 16 8 C -0.09 -1.15 1.95 -10.79 -0.02 -1.17 16 9 H 0.08 1.06 6.54 -2.39 -0.02 1.04 16 10 C 0.13 2.33 4.30 86.38 0.37 2.70 16 11 N -0.74 -16.65 5.46 -339.25 -1.85 -18.50 16 12 C 0.16 5.00 6.66 38.21 0.25 5.26 16 13 C -0.15 -5.47 9.89 22.39 0.22 -5.25 16 14 C -0.19 -8.52 9.16 22.38 0.20 -8.32 16 15 C 0.06 3.13 6.65 22.59 0.15 3.28 16 16 O -0.25 -14.40 8.58 -23.05 -0.20 -14.59 16 17 C -0.39 -23.83 9.94 67.91 0.68 -23.15 16 18 H 0.08 4.91 5.43 -2.91 -0.02 4.89 16 19 C 0.00 0.14 5.49 84.82 0.47 0.61 16 20 N -0.93 -57.35 13.96 21.61 0.30 -57.05 16 21 Si 0.97 47.11 28.62 68.60 1.96 49.08 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 C -0.14 -5.64 9.98 22.37 0.22 -5.41 16 26 C -0.15 -4.77 9.30 22.38 0.21 -4.56 16 27 C -0.11 -1.19 4.73 30.59 0.14 -1.05 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.52 6.56 -2.39 -0.02 0.51 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.73 4.83 -2.39 -0.01 0.72 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.63 6.57 -2.39 -0.02 0.61 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.74 6.32 -2.39 -0.02 0.73 16 37 H 0.06 0.84 7.18 -2.39 -0.02 0.82 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.05 0.97 7.94 -2.39 -0.02 0.95 16 40 H 0.05 0.98 7.95 -2.39 -0.02 0.96 16 41 H 0.40 7.80 7.67 -92.71 -0.71 7.09 16 42 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 43 H 0.11 5.36 5.63 -2.91 -0.02 5.34 16 44 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16 45 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 46 H 0.15 3.71 6.73 -2.91 -0.02 3.69 16 47 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -67.32 366.02 4.65 -62.67 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.24 Total: 21.74 kcal Atomic # 6 Polarization: -47.55 SS G_CDS: 4.20 Total: -43.35 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -1.55 Total: -75.55 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.20 Total: -14.59 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.96 Total: 49.08 kcal Total: -67.32 4.65 -62.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394512226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.572 kcal (2) G-P(sol) polarization free energy of solvation -67.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds