Wall clock time and date at job start Tue Mar 31 2020 10:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47310 * 2 1 4 4 H 1.09000 * 109.46738 * 54.99690 * 3 2 1 5 5 C 1.53006 * 109.46559 * 295.00299 * 3 2 1 6 6 C 1.52996 * 109.47010 * 299.99464 * 5 3 2 7 7 C 1.52996 * 109.47601 * 300.00447 * 6 5 3 8 8 C 1.53006 * 109.46932 * 60.00133 * 7 6 5 9 9 H 1.08990 * 109.46896 * 59.99966 * 8 7 6 10 10 C 1.53006 * 109.46801 * 180.02562 * 8 7 6 11 11 N 1.46504 * 109.46844 * 294.99561 * 10 8 7 12 12 C 1.39780 * 119.99714 * 180.02562 * 11 10 8 13 13 C 1.38948 * 120.00929 * 359.72374 * 12 11 10 14 14 C 1.38008 * 119.99533 * 179.77467 * 13 12 11 15 15 C 1.38901 * 120.00631 * 0.50131 * 14 13 12 16 16 O 1.35791 * 119.99376 * 179.77401 * 15 14 13 17 17 C 1.34815 * 116.99978 * 174.44011 * 16 15 14 18 18 H 1.07997 * 119.99752 * 5.05244 * 17 16 15 19 19 C 1.38616 * 120.00288 * 185.05530 * 17 16 15 20 20 N 1.31587 * 119.99868 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00452 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47151 * 89.99798 * 21 19 17 23 23 H 1.48493 * 109.47259 * 210.00059 * 21 19 17 24 24 H 1.48502 * 109.46950 * 329.99944 * 21 19 17 25 25 C 1.38894 * 120.01015 * 359.74997 * 15 14 13 26 26 C 1.38012 * 120.00779 * 0.02562 * 25 15 14 27 27 C 1.52996 * 109.47237 * 175.00351 * 3 2 1 28 28 H 1.09005 * 109.47179 * 299.99843 * 1 2 3 29 29 H 1.08996 * 109.47497 * 59.99614 * 1 2 3 30 30 H 1.08994 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46722 * 240.00012 * 2 1 3 32 32 H 1.08995 * 109.47479 * 119.99830 * 2 1 3 33 33 H 1.08994 * 109.47153 * 60.00135 * 5 3 2 34 34 H 1.09003 * 109.46152 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.46954 * 180.02562 * 6 5 3 36 36 H 1.09002 * 109.47138 * 60.00538 * 6 5 3 37 37 H 1.09002 * 109.46949 * 300.00207 * 7 6 5 38 38 H 1.08996 * 109.47361 * 180.02562 * 7 6 5 39 39 H 1.08997 * 109.47434 * 54.99536 * 10 8 7 40 40 H 1.08999 * 109.46500 * 175.00283 * 10 8 7 41 41 H 0.96998 * 119.99975 * 0.02562 * 11 10 8 42 42 H 1.08007 * 119.99712 * 0.02562 * 13 12 11 43 43 H 1.07996 * 119.99752 * 180.28062 * 14 13 12 44 44 H 0.97004 * 120.00139 * 180.02562 * 20 19 17 45 45 H 1.07997 * 119.99773 * 180.02562 * 25 15 14 46 46 H 1.08001 * 120.00413 * 179.97438 * 26 25 15 47 47 H 1.09002 * 109.46939 * 299.99783 * 27 3 2 48 48 H 1.09002 * 109.46949 * 179.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 2.2452 1.3699 -2.4890 7 6 3.7700 1.3717 -2.3633 8 6 4.1748 0.6876 -1.0560 9 1 3.8115 -0.3399 -1.0560 10 6 5.6997 0.6900 -0.9300 11 7 6.2788 -0.1340 -1.9940 12 6 7.6655 -0.2847 -2.0848 13 6 8.4951 0.3514 -1.1695 14 6 9.8639 0.1985 -1.2566 15 6 10.4128 -0.5827 -2.2654 16 8 11.7599 -0.7292 -2.3535 17 6 12.2225 -1.5905 -3.2818 18 1 11.5363 -2.0649 -3.9677 19 6 13.5787 -1.8673 -3.3558 20 7 14.4148 -1.2889 -2.5204 21 14 14.2195 -3.0613 -4.6415 22 1 14.5563 -2.3186 -5.8826 23 1 15.4355 -3.7393 -4.1250 24 1 13.1761 -4.0752 -4.9391 25 6 9.5841 -1.2145 -3.1836 26 6 8.2149 -1.0657 -3.0942 27 6 3.5648 1.4443 0.1256 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.5489 2.1252 -1.3969 34 1 1.9990 3.1540 -1.3075 35 1 1.9572 1.8574 -3.4204 36 1 1.8819 0.3422 -2.4890 37 1 4.1334 2.3994 -2.3634 38 1 4.2046 0.8331 -3.2054 39 1 6.0701 1.7112 -1.0191 40 1 5.9847 0.2833 0.0402 41 1 5.6999 -0.5748 -2.6355 42 1 8.0684 0.9621 -0.3875 43 1 10.5085 0.6893 -0.5424 44 1 15.3639 -1.4823 -2.5724 45 1 10.0111 -1.8222 -3.9676 46 1 7.5706 -1.5567 -3.8085 47 1 3.8532 0.9570 1.0570 48 1 3.9282 2.4720 0.1252 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394512229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:36 Heat of formation + Delta-G solvation = -48.808014 kcal Electronic energy + Delta-G solvation = -24183.278895 eV Core-core repulsion = 20815.613414 eV Total energy + Delta-G solvation = -3367.665481 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.83137 -40.36425 -38.64697 -36.19732 -34.27368 -33.69947 -32.25550 -31.73488 -30.33817 -28.76300 -27.35051 -26.01003 -24.27703 -23.69063 -23.10687 -22.34547 -21.72168 -19.64417 -19.26990 -18.80779 -17.82741 -16.73503 -16.45074 -16.20108 -15.89966 -15.70708 -15.39918 -15.25222 -15.20318 -14.89249 -14.47430 -14.31385 -14.05461 -14.02309 -13.59882 -13.43003 -13.15547 -13.09223 -12.95236 -12.83855 -12.57269 -12.52581 -12.33684 -12.23039 -12.09833 -11.92904 -11.79077 -11.47816 -11.09344 -10.97904 -10.88896 -10.79325 -10.75545 -10.14796 -9.76556 -8.38618 -7.90993 -6.02181 0.59478 0.94660 1.36809 1.46821 1.54396 2.23169 2.69863 2.92285 3.26498 3.67810 3.73794 3.77868 3.83686 4.13119 4.16716 4.19390 4.28984 4.32580 4.41176 4.50668 4.55966 4.58974 4.61593 4.71737 4.73021 4.81209 4.84644 4.85896 4.92282 4.99902 5.00388 5.10984 5.14800 5.22154 5.23837 5.28314 5.29633 5.33931 5.37821 5.47275 5.48068 5.56044 5.56658 5.57574 5.70471 5.79480 6.00659 6.12238 6.64191 7.05558 7.08462 7.94371 8.85927 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.038967 B = 0.002209 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.390235 B =12672.366067 C =12913.239536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.082 4.082 4 H 0.072 0.928 5 C -0.114 4.114 6 C -0.118 4.118 7 C -0.111 4.111 8 C -0.086 4.086 9 H 0.079 0.921 10 C 0.133 3.867 11 N -0.744 5.744 12 C 0.153 3.847 13 C -0.146 4.146 14 C -0.156 4.156 15 C 0.060 3.940 16 O -0.243 6.243 17 C -0.405 4.405 18 H 0.098 0.902 19 C -0.030 4.030 20 N -0.927 5.927 21 Si 1.018 2.982 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.254 1.254 25 C -0.193 4.193 26 C -0.146 4.146 27 C -0.106 4.106 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.401 0.599 42 H 0.140 0.860 43 H 0.112 0.888 44 H 0.269 0.731 45 H 0.119 0.881 46 H 0.139 0.861 47 H 0.065 0.935 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.790 4.162 2.568 30.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.101 4.101 4 H 0.091 0.909 5 C -0.151 4.151 6 C -0.156 4.156 7 C -0.149 4.149 8 C -0.105 4.105 9 H 0.097 0.903 10 C 0.009 3.991 11 N -0.378 5.378 12 C 0.052 3.948 13 C -0.169 4.169 14 C -0.176 4.176 15 C 0.011 3.989 16 O -0.151 6.151 17 C -0.482 4.482 18 H 0.115 0.885 19 C -0.226 4.226 20 N -0.567 5.567 21 Si 0.837 3.163 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.177 1.177 25 C -0.213 4.213 26 C -0.169 4.169 27 C -0.144 4.144 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.237 0.763 42 H 0.158 0.842 43 H 0.130 0.870 44 H 0.078 0.922 45 H 0.137 0.863 46 H 0.156 0.844 47 H 0.084 0.916 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -29.458 4.397 2.905 29.925 hybrid contribution 0.756 -0.553 -0.637 1.133 sum -28.701 3.845 2.268 29.046 Atomic orbital electron populations 1.21811 0.95675 1.01559 1.01951 1.21668 0.96055 0.96386 1.01954 1.21103 0.94637 0.96335 0.97998 0.90938 1.21580 1.00536 0.98882 0.94123 1.21551 0.94731 1.01058 0.98243 1.21548 0.96206 1.00471 0.96651 1.21283 0.92344 1.00727 0.96107 0.90264 1.21357 0.93426 0.94220 0.90140 1.44330 1.01402 1.57014 1.35098 1.17543 0.84923 0.97065 0.95284 1.20421 0.91039 1.04025 1.01365 1.20233 0.95450 1.03084 0.98812 1.19731 0.84295 0.98359 0.96523 1.83933 1.17252 1.58792 1.55130 1.21748 0.93071 1.22000 1.11359 0.88460 1.26547 0.94920 1.00284 1.00888 1.70212 1.03667 1.44239 1.38569 0.84600 0.78171 0.77073 0.76430 1.18930 1.19769 1.17745 1.21053 0.94145 1.04733 1.01323 1.20496 0.93492 1.02749 1.00143 1.21535 0.95239 1.00427 0.97198 0.92761 0.92307 0.92946 0.91615 0.92458 0.91321 0.92313 0.92031 0.91484 0.92543 0.92364 0.93198 0.93080 0.76294 0.84214 0.86990 0.92178 0.86344 0.84361 0.91624 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.67 71.98 0.70 -0.78 16 2 C -0.12 -1.33 4.69 30.60 0.14 -1.19 16 3 C -0.08 -0.89 2.66 -10.79 -0.03 -0.92 16 4 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 5 C -0.11 -1.21 5.21 30.59 0.16 -1.05 16 6 C -0.12 -1.37 5.65 30.59 0.17 -1.20 16 7 C -0.11 -1.55 5.08 30.60 0.16 -1.39 16 8 C -0.09 -1.21 1.95 -10.79 -0.02 -1.23 16 9 H 0.08 1.12 6.54 -2.39 -0.02 1.10 16 10 C 0.13 2.55 4.30 86.38 0.37 2.92 16 11 N -0.74 -17.39 5.46 -339.24 -1.85 -19.25 16 12 C 0.15 4.97 6.66 38.22 0.25 5.23 16 13 C -0.15 -5.19 9.30 22.39 0.21 -4.98 16 14 C -0.16 -6.96 9.98 22.37 0.22 -6.74 16 15 C 0.06 3.14 6.65 22.59 0.15 3.29 16 16 O -0.24 -15.21 9.76 -23.04 -0.22 -15.43 16 17 C -0.41 -24.44 9.48 67.91 0.64 -23.79 16 18 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 19 C -0.03 -1.79 5.49 84.82 0.47 -1.32 16 20 N -0.93 -58.84 13.67 21.61 0.30 -58.54 16 21 Si 1.02 44.38 29.55 68.60 2.03 46.40 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 25 C -0.19 -8.71 9.16 22.37 0.20 -8.50 16 26 C -0.15 -5.22 9.89 22.39 0.22 -5.00 16 27 C -0.11 -1.32 4.73 30.59 0.14 -1.17 16 28 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.06 0.54 6.56 -2.39 -0.02 0.52 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.76 4.83 -2.39 -0.01 0.75 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.65 6.56 -2.39 -0.02 0.64 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 0.76 6.32 -2.39 -0.02 0.74 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 0.87 7.18 -2.39 -0.02 0.86 16 39 H 0.05 1.01 7.94 -2.39 -0.02 0.99 16 40 H 0.05 1.02 7.96 -2.39 -0.02 1.01 16 41 H 0.40 7.93 7.67 -92.71 -0.71 7.22 16 42 H 0.14 4.09 6.73 -2.91 -0.02 4.07 16 43 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 44 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 45 H 0.12 5.42 5.63 -2.91 -0.02 5.40 16 46 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 47 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -71.30 367.15 4.65 -66.65 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.24 Total: 28.00 kcal Atomic # 6 Polarization: -52.00 SS G_CDS: 4.17 Total: -47.83 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -1.56 Total: -77.79 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.22 Total: -15.43 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -71.30 4.65 -66.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394512229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.842 kcal (2) G-P(sol) polarization free energy of solvation -71.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds