Wall clock time and date at job start Tue Mar 31 2020 10:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47130 * 2 1 4 4 H 1.09004 * 109.47028 * 55.00237 * 3 2 1 5 5 C 1.52999 * 109.47149 * 294.99590 * 3 2 1 6 6 C 1.53001 * 109.46820 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47275 * 60.00431 * 6 5 3 8 8 C 1.52999 * 109.46845 * 299.99554 * 7 6 5 9 9 H 1.08998 * 109.47168 * 300.00214 * 8 7 6 10 10 C 1.53001 * 109.46999 * 179.97438 * 8 7 6 11 11 N 1.46499 * 109.46887 * 65.00361 * 10 8 7 12 12 C 1.39677 * 120.00055 * 179.97438 * 11 10 8 13 13 C 1.38999 * 120.03915 * 0.02562 * 12 11 10 14 14 C 1.38148 * 120.06185 * 179.97438 * 13 12 11 15 15 C 1.38167 * 120.14519 * 0.02562 * 14 13 12 16 16 C 1.38921 * 120.07654 * 0.24974 * 15 14 13 17 17 O 1.35752 * 120.03127 * 179.72687 * 16 15 14 18 18 C 1.34829 * 117.00120 * 174.48297 * 17 16 15 19 19 H 1.08007 * 120.00144 * 5.07855 * 18 17 16 20 20 C 1.38642 * 120.00282 * 185.07404 * 18 17 16 21 21 N 1.31562 * 120.00166 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00240 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47273 * 60.00254 * 22 20 18 24 24 H 1.48507 * 109.47170 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47255 * 300.00195 * 22 20 18 26 26 C 1.38750 * 120.03925 * 179.97438 * 12 11 10 27 27 C 1.52999 * 109.47229 * 174.99431 * 3 2 1 28 28 H 1.09009 * 109.46899 * 59.99932 * 1 2 3 29 29 H 1.08999 * 109.47322 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47782 * 300.00242 * 1 2 3 31 31 H 1.08995 * 109.47267 * 239.99690 * 2 1 3 32 32 H 1.09004 * 109.46880 * 119.99583 * 2 1 3 33 33 H 1.08996 * 109.47350 * 300.00275 * 5 3 2 34 34 H 1.08998 * 109.46720 * 60.00457 * 5 3 2 35 35 H 1.09009 * 109.46867 * 180.02562 * 6 5 3 36 36 H 1.09004 * 109.47579 * 299.99707 * 6 5 3 37 37 H 1.08994 * 109.47013 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.46906 * 59.99531 * 7 6 5 39 39 H 1.09000 * 109.47544 * 305.00339 * 10 8 7 40 40 H 1.09002 * 109.47245 * 184.99568 * 10 8 7 41 41 H 0.97002 * 119.99873 * 359.97438 * 11 10 8 42 42 H 1.08001 * 119.96813 * 359.97438 * 13 12 11 43 43 H 1.08004 * 119.92800 * 179.97438 * 14 13 12 44 44 H 1.08000 * 119.96479 * 179.97438 * 15 14 13 45 45 H 0.97001 * 120.00557 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.07193 * 0.02562 * 26 12 11 47 47 H 1.08998 * 109.47106 * 60.00223 * 27 3 2 48 48 H 1.09000 * 109.47325 * 300.00416 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6353 2.1265 -1.3074 6 6 2.1448 3.5692 -1.3070 7 6 3.6696 3.5716 -1.1810 8 6 4.0742 2.8876 0.1264 9 1 3.6392 3.4264 0.9681 10 6 5.5991 2.8894 0.2522 11 7 6.0775 4.2689 0.3723 12 6 7.4445 4.5253 0.5005 13 6 8.3517 3.4723 0.5137 14 6 9.7039 3.7255 0.6400 15 6 10.1589 5.0251 0.7540 16 6 9.2569 6.0816 0.7473 17 8 9.7044 7.3578 0.8650 18 6 8.7909 8.3411 0.7366 19 1 7.7444 8.0957 0.6308 20 6 9.1948 9.6674 0.7404 21 7 10.4695 9.9665 0.8689 22 14 7.9291 11.0298 0.5632 23 1 6.9545 10.9484 1.6806 24 1 8.6125 12.3478 0.5968 25 1 7.2142 10.8762 -0.7293 26 6 7.8985 5.8315 0.6138 27 6 3.5648 1.4444 0.1259 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0699 1.5875 -2.1492 34 1 0.5490 2.1253 -1.3969 35 1 1.8561 4.0567 -2.2383 36 1 1.7097 4.1081 -0.4653 37 1 4.0325 4.5993 -1.1812 38 1 4.1045 3.0328 -2.0227 39 1 6.0373 2.4287 -0.6332 40 1 5.8913 2.3252 1.1378 41 1 5.4448 5.0041 0.3628 42 1 7.9992 2.4553 0.4251 43 1 10.4070 2.9056 0.6503 44 1 11.2166 5.2196 0.8530 45 1 10.7522 10.8944 0.8712 46 1 7.1957 6.6515 0.6035 47 1 3.9995 0.9054 -0.7159 48 1 3.8531 0.9570 1.0572 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394557582.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:43 Heat of formation + Delta-G solvation = -39.934114 kcal Electronic energy + Delta-G solvation = -24261.680806 eV Core-core repulsion = 20894.400126 eV Total energy + Delta-G solvation = -3367.280680 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.61546 -38.86353 -36.98603 -35.27009 -33.61932 -32.16612 -31.56808 -29.64040 -28.89885 -27.88208 -25.37243 -25.18343 -23.69240 -22.40834 -21.59873 -20.76596 -20.01857 -20.00270 -17.80195 -17.26328 -15.91386 -15.36612 -15.23149 -15.01115 -14.96197 -14.62934 -14.21445 -14.10222 -13.75264 -13.68525 -13.54497 -13.41632 -12.94191 -12.76594 -12.67188 -12.30885 -12.02004 -11.85438 -11.66111 -11.59350 -11.42953 -11.24171 -11.19592 -10.99584 -10.83109 -10.74565 -10.65357 -10.53923 -10.36445 -10.20367 -10.13698 -9.34337 -9.31641 -8.71496 -7.29480 -6.70767 -6.36950 -3.96163 2.43654 2.63168 3.16386 3.18283 3.20282 3.81929 4.02925 4.36432 4.41179 4.47366 4.73736 4.77787 4.88066 4.95360 5.00883 5.11518 5.18605 5.19810 5.28212 5.36050 5.38510 5.41920 5.44182 5.55303 5.60906 5.67885 5.68969 5.76734 5.80007 5.80438 5.86897 5.96692 6.00121 6.04421 6.06336 6.13386 6.14140 6.30737 6.33511 6.42073 6.71074 6.71303 7.10139 7.19745 7.44348 7.54332 7.72903 8.08864 8.09610 8.27322 9.09108 9.82392 10.81436 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.002800 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.041679 B = 9999.260517 C =11346.873512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.086 4.086 4 H 0.069 0.931 5 C -0.115 4.115 6 C -0.120 4.120 7 C -0.114 4.114 8 C -0.097 4.097 9 H 0.074 0.926 10 C 0.137 3.863 11 N -0.753 5.753 12 C 0.250 3.750 13 C -0.279 4.279 14 C -0.041 4.041 15 C -0.237 4.237 16 C 0.189 3.811 17 O -0.179 6.179 18 C -0.388 4.388 19 H 0.090 0.910 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.939 3.061 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.271 1.271 26 C -0.303 4.303 27 C -0.106 4.106 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.393 0.607 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.269 0.731 46 H 0.123 0.877 47 H 0.064 0.936 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.180 -17.237 -2.962 25.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.105 4.105 4 H 0.087 0.913 5 C -0.152 4.152 6 C -0.158 4.158 7 C -0.152 4.152 8 C -0.116 4.116 9 H 0.092 0.908 10 C 0.012 3.988 11 N -0.386 5.386 12 C 0.148 3.852 13 C -0.302 4.302 14 C -0.059 4.059 15 C -0.258 4.258 16 C 0.135 3.865 17 O -0.082 6.082 18 C -0.465 4.465 19 H 0.107 0.893 20 C -0.166 4.166 21 N -0.501 5.501 22 Si 0.764 3.236 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.327 4.327 27 C -0.144 4.144 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.227 0.773 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.079 0.921 46 H 0.141 0.859 47 H 0.083 0.917 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.821 -17.123 -2.923 24.886 hybrid contribution -0.932 0.974 -0.091 1.351 sum -18.753 -16.149 -3.014 24.931 Atomic orbital electron populations 1.21823 0.96033 1.01393 1.01885 1.21570 0.95783 0.96462 1.01950 1.21175 0.95380 0.95720 0.98218 0.91263 1.21636 1.00384 0.95775 0.97401 1.21545 0.95903 0.96629 1.01696 1.21583 0.95422 1.00960 0.97202 1.21370 0.94751 0.96824 0.98618 0.90767 1.21208 0.92702 0.84436 1.00459 1.44551 1.04321 1.06462 1.83222 1.17470 0.82947 0.93005 0.91768 1.20068 0.93008 0.96493 1.20647 1.20373 0.94453 0.95114 0.96008 1.20031 0.98569 0.90964 1.16239 1.19073 0.91263 0.86080 0.90127 1.83986 1.36658 1.10092 1.77478 1.21237 0.89121 0.84241 1.51870 0.89299 1.25259 0.97121 0.97392 0.96817 1.70033 1.14405 1.19330 1.46316 0.85816 0.79384 0.79328 0.79066 1.19626 1.20342 1.19623 1.20499 0.96117 0.94857 1.21213 1.21561 0.94983 0.95697 1.02125 0.92526 0.93001 0.92834 0.92050 0.92042 0.92075 0.92031 0.92096 0.92105 0.91691 0.91847 0.92834 0.92876 0.77254 0.87934 0.87272 0.86968 0.92112 0.85901 0.91705 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.67 37.16 0.36 -0.57 16 2 C -0.12 -0.78 5.40 -26.73 -0.14 -0.93 16 3 C -0.09 -0.63 2.19 -90.62 -0.20 -0.83 16 4 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 5 C -0.11 -0.84 4.96 -26.73 -0.13 -0.97 16 6 C -0.12 -0.99 5.92 -26.73 -0.16 -1.14 16 7 C -0.11 -1.08 5.08 -26.73 -0.14 -1.22 16 8 C -0.10 -0.91 2.23 -90.59 -0.20 -1.12 16 9 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 10 C 0.14 1.63 4.30 -4.04 -0.02 1.62 16 11 N -0.75 -11.39 5.46 -58.65 -0.32 -11.71 16 12 C 0.25 4.79 6.65 -83.81 -0.56 4.23 16 13 C -0.28 -5.13 9.31 -39.33 -0.37 -5.50 16 14 C -0.04 -0.77 10.03 -39.64 -0.40 -1.17 16 15 C -0.24 -5.30 9.99 -39.35 -0.39 -5.70 16 16 C 0.19 4.77 6.65 -39.13 -0.26 4.51 16 17 O -0.18 -5.27 9.76 0.04 0.00 -5.27 16 18 C -0.39 -11.12 9.49 30.88 0.29 -10.83 16 19 H 0.09 2.36 5.20 -52.48 -0.27 2.09 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.87 -25.89 13.67 55.48 0.76 -25.13 16 22 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 26 C -0.30 -6.86 9.01 -39.20 -0.35 -7.21 16 27 C -0.11 -0.85 4.49 -26.71 -0.12 -0.97 16 28 H 0.06 0.33 6.57 -51.92 -0.34 -0.01 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 35 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.69 7.18 -51.93 -0.37 0.31 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.66 7.95 -51.93 -0.41 0.24 16 40 H 0.05 0.65 7.95 -51.93 -0.41 0.23 16 41 H 0.39 5.59 7.66 -40.82 -0.31 5.27 16 42 H 0.10 1.63 6.73 -52.49 -0.35 1.28 16 43 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 44 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.12 2.79 5.63 -52.49 -0.30 2.49 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -30.88 374.17 -9.99 -40.87 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -8.17 Total: 6.51 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -2.88 Total: -26.80 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.44 Total: -36.84 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: 0.00 Total: -5.27 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.88 -9.99 -40.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394557582.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.936 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds