Wall clock time and date at job start Tue Mar 31 2020 10:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47130 * 2 1 4 4 H 1.09004 * 109.47028 * 55.00237 * 3 2 1 5 5 C 1.52999 * 109.47149 * 294.99590 * 3 2 1 6 6 C 1.53001 * 109.46820 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47275 * 60.00431 * 6 5 3 8 8 C 1.52999 * 109.46845 * 299.99554 * 7 6 5 9 9 H 1.08998 * 109.47168 * 300.00214 * 8 7 6 10 10 C 1.53001 * 109.46999 * 179.97438 * 8 7 6 11 11 N 1.46499 * 109.46887 * 65.00361 * 10 8 7 12 12 C 1.39677 * 120.00055 * 179.97438 * 11 10 8 13 13 C 1.38999 * 120.03915 * 0.02562 * 12 11 10 14 14 C 1.38148 * 120.06185 * 179.97438 * 13 12 11 15 15 C 1.38167 * 120.14519 * 0.02562 * 14 13 12 16 16 C 1.38921 * 120.07654 * 0.24974 * 15 14 13 17 17 O 1.35752 * 120.03127 * 179.72687 * 16 15 14 18 18 C 1.34829 * 117.00120 * 174.48297 * 17 16 15 19 19 H 1.08007 * 120.00144 * 5.07855 * 18 17 16 20 20 C 1.38642 * 120.00282 * 185.07404 * 18 17 16 21 21 N 1.31562 * 120.00166 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00240 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47273 * 60.00254 * 22 20 18 24 24 H 1.48507 * 109.47170 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47255 * 300.00195 * 22 20 18 26 26 C 1.38750 * 120.03925 * 179.97438 * 12 11 10 27 27 C 1.52999 * 109.47229 * 174.99431 * 3 2 1 28 28 H 1.09009 * 109.46899 * 59.99932 * 1 2 3 29 29 H 1.08999 * 109.47322 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47782 * 300.00242 * 1 2 3 31 31 H 1.08995 * 109.47267 * 239.99690 * 2 1 3 32 32 H 1.09004 * 109.46880 * 119.99583 * 2 1 3 33 33 H 1.08996 * 109.47350 * 300.00275 * 5 3 2 34 34 H 1.08998 * 109.46720 * 60.00457 * 5 3 2 35 35 H 1.09009 * 109.46867 * 180.02562 * 6 5 3 36 36 H 1.09004 * 109.47579 * 299.99707 * 6 5 3 37 37 H 1.08994 * 109.47013 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.46906 * 59.99531 * 7 6 5 39 39 H 1.09000 * 109.47544 * 305.00339 * 10 8 7 40 40 H 1.09002 * 109.47245 * 184.99568 * 10 8 7 41 41 H 0.97002 * 119.99873 * 359.97438 * 11 10 8 42 42 H 1.08001 * 119.96813 * 359.97438 * 13 12 11 43 43 H 1.08004 * 119.92800 * 179.97438 * 14 13 12 44 44 H 1.08000 * 119.96479 * 179.97438 * 15 14 13 45 45 H 0.97001 * 120.00557 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.07193 * 0.02562 * 26 12 11 47 47 H 1.08998 * 109.47106 * 60.00223 * 27 3 2 48 48 H 1.09000 * 109.47325 * 300.00416 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6353 2.1265 -1.3074 6 6 2.1448 3.5692 -1.3070 7 6 3.6696 3.5716 -1.1810 8 6 4.0742 2.8876 0.1264 9 1 3.6392 3.4264 0.9681 10 6 5.5991 2.8894 0.2522 11 7 6.0775 4.2689 0.3723 12 6 7.4445 4.5253 0.5005 13 6 8.3517 3.4723 0.5137 14 6 9.7039 3.7255 0.6400 15 6 10.1589 5.0251 0.7540 16 6 9.2569 6.0816 0.7473 17 8 9.7044 7.3578 0.8650 18 6 8.7909 8.3411 0.7366 19 1 7.7444 8.0957 0.6308 20 6 9.1948 9.6674 0.7404 21 7 10.4695 9.9665 0.8689 22 14 7.9291 11.0298 0.5632 23 1 6.9545 10.9484 1.6806 24 1 8.6125 12.3478 0.5968 25 1 7.2142 10.8762 -0.7293 26 6 7.8985 5.8315 0.6138 27 6 3.5648 1.4444 0.1259 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0699 1.5875 -2.1492 34 1 0.5490 2.1253 -1.3969 35 1 1.8561 4.0567 -2.2383 36 1 1.7097 4.1081 -0.4653 37 1 4.0325 4.5993 -1.1812 38 1 4.1045 3.0328 -2.0227 39 1 6.0373 2.4287 -0.6332 40 1 5.8913 2.3252 1.1378 41 1 5.4448 5.0041 0.3628 42 1 7.9992 2.4553 0.4251 43 1 10.4070 2.9056 0.6503 44 1 11.2166 5.2196 0.8530 45 1 10.7522 10.8944 0.8712 46 1 7.1957 6.6515 0.6035 47 1 3.9995 0.9054 -0.7159 48 1 3.8531 0.9570 1.0572 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394557582.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:42 Heat of formation + Delta-G solvation = -56.149929 kcal Electronic energy + Delta-G solvation = -24262.383976 eV Core-core repulsion = 20894.400126 eV Total energy + Delta-G solvation = -3367.983850 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.82908 -40.14988 -38.59569 -36.44254 -34.59546 -34.13288 -32.49985 -30.77238 -30.18578 -29.21464 -27.23390 -26.33531 -24.36211 -23.53706 -22.84776 -22.19031 -20.96002 -20.67837 -19.67868 -18.96918 -17.25354 -16.73567 -16.32995 -16.23045 -15.89998 -15.78970 -15.67056 -15.44956 -15.24525 -14.71492 -14.54333 -14.38867 -14.26078 -14.06703 -13.73778 -13.49228 -13.31902 -12.99187 -12.79199 -12.58511 -12.49446 -12.34608 -12.27690 -12.17724 -12.06933 -11.90874 -11.81046 -11.56897 -11.30252 -11.28973 -10.95452 -10.86423 -10.77803 -10.57776 -9.09360 -8.44575 -8.21238 -6.13023 0.77250 0.93314 1.33848 1.45801 1.50506 2.18939 2.58021 2.90048 3.27826 3.60319 3.64949 3.76167 3.80463 4.11636 4.20811 4.24271 4.30717 4.35183 4.42887 4.48615 4.57548 4.58599 4.62730 4.69306 4.76069 4.78756 4.80356 4.82067 4.84495 5.00197 5.09018 5.09979 5.14442 5.16894 5.19064 5.22584 5.28699 5.31530 5.36311 5.39326 5.46116 5.48694 5.56600 5.66324 5.76230 5.81369 6.05173 6.12740 6.62270 6.87900 7.00492 7.83950 8.78799 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.002800 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.041679 B = 9999.260517 C =11346.873512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.083 4.083 4 H 0.065 0.935 5 C -0.112 4.112 6 C -0.118 4.118 7 C -0.113 4.113 8 C -0.088 4.088 9 H 0.071 0.929 10 C 0.133 3.867 11 N -0.744 5.744 12 C 0.256 3.744 13 C -0.265 4.265 14 C -0.026 4.026 15 C -0.263 4.263 16 C 0.151 3.849 17 O -0.232 6.232 18 C -0.411 4.411 19 H 0.098 0.902 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.018 2.982 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.258 1.258 26 C -0.318 4.318 27 C -0.102 4.102 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.397 0.603 42 H 0.141 0.859 43 H 0.152 0.848 44 H 0.106 0.894 45 H 0.272 0.728 46 H 0.112 0.888 47 H 0.068 0.932 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.791 -19.778 -3.372 28.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.102 4.102 4 H 0.084 0.916 5 C -0.149 4.149 6 C -0.156 4.156 7 C -0.151 4.151 8 C -0.106 4.106 9 H 0.090 0.910 10 C 0.010 3.990 11 N -0.374 5.374 12 C 0.151 3.849 13 C -0.288 4.288 14 C -0.045 4.045 15 C -0.284 4.284 16 C 0.100 3.900 17 O -0.139 6.139 18 C -0.487 4.487 19 H 0.115 0.885 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.837 3.163 23 H -0.182 1.182 24 H -0.195 1.195 25 H -0.183 1.183 26 C -0.342 4.342 27 C -0.140 4.140 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.232 0.768 42 H 0.159 0.841 43 H 0.170 0.830 44 H 0.124 0.876 45 H 0.081 0.919 46 H 0.130 0.870 47 H 0.087 0.913 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.487 -19.737 -3.338 28.643 hybrid contribution -0.207 1.416 0.013 1.432 sum -20.695 -18.321 -3.325 27.838 Atomic orbital electron populations 1.21823 0.95698 1.01745 1.01880 1.21546 0.96069 0.95808 1.02126 1.21139 0.94810 0.96246 0.97979 0.91636 1.21615 1.00819 0.94987 0.97469 1.21523 0.94895 0.97412 1.01748 1.21563 0.96382 0.99998 0.97153 1.21293 0.92937 0.97993 0.98424 0.91023 1.21450 0.94354 0.82297 1.00942 1.44721 1.02780 1.08352 1.81510 1.17568 0.85063 0.91883 0.90362 1.20548 0.92530 0.97891 1.17781 1.20828 0.95715 0.94554 0.93384 1.20260 0.98182 0.92007 1.17915 1.19652 0.93124 0.85474 0.91721 1.83947 1.37902 1.11748 1.80259 1.21733 0.89703 0.84955 1.52289 0.88457 1.26589 0.99615 0.99891 0.96091 1.70187 1.16975 1.20040 1.48833 0.84661 0.76464 0.75367 0.79773 1.18197 1.19530 1.18269 1.20512 0.95028 0.96358 1.22295 1.21537 0.95453 0.94389 1.02587 0.92419 0.92521 0.92962 0.91865 0.91875 0.92012 0.91334 0.91962 0.92224 0.93163 0.92046 0.92277 0.92107 0.76793 0.84148 0.83037 0.87577 0.91905 0.86979 0.91336 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.67 71.98 0.70 -0.80 16 2 C -0.12 -1.23 5.40 30.59 0.17 -1.06 16 3 C -0.08 -0.99 2.19 -10.79 -0.02 -1.01 16 4 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 5 C -0.11 -1.36 4.96 30.59 0.15 -1.21 16 6 C -0.12 -1.71 5.92 30.59 0.18 -1.53 16 7 C -0.11 -1.93 5.08 30.59 0.16 -1.77 16 8 C -0.09 -1.42 2.23 -10.78 -0.02 -1.45 16 9 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 10 C 0.13 2.74 4.30 86.38 0.37 3.11 16 11 N -0.74 -20.86 5.46 -339.47 -1.85 -22.72 16 12 C 0.26 9.39 6.65 38.20 0.25 9.65 16 13 C -0.26 -8.82 9.31 22.43 0.21 -8.61 16 14 C -0.03 -0.93 10.03 22.23 0.22 -0.71 16 15 C -0.26 -11.94 9.99 22.42 0.22 -11.71 16 16 C 0.15 7.99 6.65 22.56 0.15 8.14 16 17 O -0.23 -14.59 9.76 -22.76 -0.22 -14.81 16 18 C -0.41 -24.76 9.49 67.92 0.64 -24.12 16 19 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 20 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 21 N -0.92 -58.02 13.67 21.61 0.30 -57.73 16 22 Si 1.02 43.96 29.55 68.60 2.03 45.99 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 26 C -0.32 -14.67 9.01 22.52 0.20 -14.46 16 27 C -0.10 -1.32 4.49 30.61 0.14 -1.18 16 28 H 0.06 0.54 6.57 -2.38 -0.02 0.53 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.76 6.56 -2.39 -0.02 0.75 16 35 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.05 1.00 7.18 -2.39 -0.02 0.98 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.21 7.95 -2.39 -0.02 1.19 16 40 H 0.06 1.22 7.95 -2.39 -0.02 1.20 16 41 H 0.40 10.73 7.66 -92.71 -0.71 10.02 16 42 H 0.14 3.68 6.73 -2.91 -0.02 3.66 16 43 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 44 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 45 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 46 H 0.11 5.29 5.63 -2.91 -0.02 5.27 16 47 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -71.38 374.17 4.65 -66.73 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.22 Total: 32.25 kcal Atomic # 6 Polarization: -53.89 SS G_CDS: 4.18 Total: -49.71 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -1.56 Total: -80.44 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.22 Total: -14.81 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -71.38 4.65 -66.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394557582.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.580 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds