Wall clock time and date at job start Tue Mar 31 2020 10:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47016 * 2 1 4 4 H 1.08993 * 109.47605 * 304.99709 * 3 2 1 5 5 C 1.53003 * 109.47147 * 64.99937 * 3 2 1 6 6 C 1.52995 * 109.47296 * 60.00213 * 5 3 2 7 7 C 1.53004 * 109.47377 * 59.99882 * 6 5 3 8 8 C 1.53003 * 109.47003 * 300.00296 * 7 6 5 9 9 H 1.09000 * 109.46816 * 299.99533 * 8 7 6 10 10 C 1.52994 * 109.46948 * 180.02562 * 8 7 6 11 11 N 1.46502 * 109.47383 * 64.99694 * 10 8 7 12 12 C 1.39671 * 119.99851 * 179.97438 * 11 10 8 13 13 C 1.39000 * 120.04447 * 359.97438 * 12 11 10 14 14 C 1.38146 * 120.06681 * 180.02562 * 13 12 11 15 15 C 1.38174 * 120.14307 * 0.02562 * 14 13 12 16 16 C 1.38920 * 120.07774 * 359.97438 * 15 14 13 17 17 O 1.35742 * 120.03259 * 179.97438 * 16 15 14 18 18 C 1.34833 * 117.00244 * 174.46562 * 17 16 15 19 19 H 1.08004 * 119.99713 * 5.05912 * 18 17 16 20 20 C 1.38650 * 120.00548 * 185.05704 * 18 17 16 21 21 N 1.31551 * 120.00621 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99693 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46825 * 89.99928 * 22 20 18 24 24 H 1.48493 * 109.47022 * 210.00130 * 22 20 18 25 25 H 1.48497 * 109.46933 * 330.00252 * 22 20 18 26 26 C 1.38749 * 120.03648 * 180.02562 * 12 11 10 27 27 C 1.52995 * 109.47296 * 59.99654 * 8 7 6 28 28 H 1.09004 * 109.47057 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47553 * 299.99949 * 1 2 3 30 30 H 1.08997 * 109.47107 * 60.00118 * 1 2 3 31 31 H 1.09000 * 109.47553 * 240.00051 * 2 1 3 32 32 H 1.09007 * 109.47152 * 119.99954 * 2 1 3 33 33 H 1.09007 * 109.47150 * 180.02562 * 5 3 2 34 34 H 1.09000 * 109.46796 * 299.99826 * 5 3 2 35 35 H 1.08999 * 109.47384 * 180.02562 * 6 5 3 36 36 H 1.09007 * 109.47095 * 300.00124 * 6 5 3 37 37 H 1.09004 * 109.46857 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.47221 * 60.00172 * 7 6 5 39 39 H 1.09000 * 109.47368 * 304.99523 * 10 8 7 40 40 H 1.09000 * 109.46963 * 185.00006 * 10 8 7 41 41 H 0.96994 * 119.99851 * 0.02562 * 11 10 8 42 42 H 1.08006 * 119.97076 * 0.02562 * 13 12 11 43 43 H 1.08004 * 119.93281 * 180.27315 * 14 13 12 44 44 H 1.07999 * 119.96513 * 180.02562 * 15 14 13 45 45 H 0.96994 * 120.00478 * 180.02562 * 21 20 18 46 46 H 1.08002 * 120.07280 * 359.95665 * 26 12 11 47 47 H 1.09004 * 109.46613 * 59.99908 * 27 8 7 48 48 H 1.08999 * 109.47384 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1265 1.3074 6 6 2.2452 1.3700 2.4890 7 6 3.7700 1.3719 2.3633 8 6 4.1748 0.6878 1.0560 9 1 3.8115 -0.3399 1.0560 10 6 5.6996 0.6891 0.9306 11 7 6.2778 -0.1354 1.9947 12 6 7.6633 -0.2870 2.0858 13 6 8.4943 0.3434 1.1671 14 6 9.8647 0.1933 1.2564 15 6 10.4137 -0.5839 2.2583 16 6 9.5887 -1.2167 3.1797 17 8 10.1290 -1.9804 4.1632 18 6 9.2831 -2.4722 5.0909 19 1 8.2189 -2.3213 4.9853 20 6 9.7794 -3.1715 6.1804 21 7 8.9541 -3.6509 7.0858 22 14 11.6201 -3.4331 6.3627 23 1 12.2061 -2.3071 7.1334 24 1 11.8700 -4.7081 7.0816 25 1 12.2472 -3.4918 5.0179 26 6 8.2117 -1.0681 3.0929 27 6 3.5647 1.4443 -0.1257 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9980 3.1544 1.3072 34 1 0.5488 2.1252 1.3969 35 1 1.9564 1.8571 3.4204 36 1 1.8819 0.3423 2.4890 37 1 4.2046 0.8324 3.2050 38 1 4.1333 2.3995 2.3633 39 1 6.0707 1.7101 1.0199 40 1 5.9847 0.2824 -0.0397 41 1 5.6985 -0.5765 2.6354 42 1 8.0682 0.9513 0.3825 43 1 10.5085 0.6878 0.5441 44 1 11.4854 -0.6989 2.3257 45 1 9.3013 -4.1398 7.8482 46 1 7.5683 -1.5592 3.8080 47 1 3.9281 2.4720 -0.1256 48 1 3.8535 0.9573 -1.0571 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394557583.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:47 Heat of formation + Delta-G solvation = -33.802902 kcal Electronic energy + Delta-G solvation = -24529.043230 eV Core-core repulsion = 21162.028420 eV Total energy + Delta-G solvation = -3367.014810 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.89041 -39.05179 -37.14149 -35.18221 -33.17567 -32.27157 -31.56219 -29.82294 -29.11842 -28.04869 -25.36830 -25.12270 -23.62418 -22.55053 -21.79190 -21.30155 -20.24980 -18.62126 -17.81600 -17.43669 -16.18913 -15.57550 -15.17608 -15.10275 -15.04895 -14.62580 -14.22846 -14.06330 -13.83313 -13.56695 -13.44533 -13.38050 -13.00746 -12.72352 -12.36687 -12.34755 -12.17855 -12.09332 -11.97248 -11.69328 -11.47003 -11.30147 -11.13274 -10.89979 -10.85358 -10.76029 -10.56856 -10.31717 -10.19446 -10.12832 -10.09546 -9.39166 -9.36876 -8.77450 -7.41914 -6.79076 -6.35287 -4.01888 2.33967 2.51700 3.26523 3.30149 3.45580 3.81106 4.29652 4.40263 4.43586 4.49783 4.67540 4.81620 4.93768 4.96960 4.98852 5.05002 5.14518 5.19062 5.21848 5.32183 5.34902 5.43539 5.52030 5.54875 5.63213 5.66074 5.70864 5.72301 5.83497 5.84502 5.90908 5.96388 5.99608 6.03236 6.11413 6.16449 6.17528 6.22000 6.34606 6.36562 6.56237 6.62702 7.01639 7.26994 7.32594 7.57545 7.85675 7.97863 8.10999 8.24744 9.01065 9.66145 10.72742 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.002839 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.440454 B = 9861.849907 C =10830.383395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.085 4.085 4 H 0.068 0.932 5 C -0.115 4.115 6 C -0.122 4.122 7 C -0.114 4.114 8 C -0.099 4.099 9 H 0.078 0.922 10 C 0.136 3.864 11 N -0.752 5.752 12 C 0.250 3.750 13 C -0.272 4.272 14 C -0.041 4.041 15 C -0.239 4.239 16 C 0.196 3.804 17 O -0.219 6.219 18 C -0.385 4.385 19 H 0.105 0.895 20 C 0.062 3.938 21 N -0.884 5.884 22 Si 0.904 3.096 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.292 4.292 27 C -0.106 4.106 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.395 0.605 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.278 0.722 46 H 0.130 0.870 47 H 0.064 0.936 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.418 10.730 -14.040 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.104 4.104 4 H 0.086 0.914 5 C -0.153 4.153 6 C -0.159 4.159 7 C -0.151 4.151 8 C -0.117 4.117 9 H 0.096 0.904 10 C 0.011 3.989 11 N -0.383 5.383 12 C 0.148 3.852 13 C -0.295 4.295 14 C -0.060 4.060 15 C -0.260 4.260 16 C 0.143 3.857 17 O -0.124 6.124 18 C -0.461 4.461 19 H 0.122 0.878 20 C -0.141 4.141 21 N -0.522 5.522 22 Si 0.730 3.270 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.183 1.183 26 C -0.315 4.315 27 C -0.144 4.144 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.230 0.770 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.088 0.912 46 H 0.147 0.853 47 H 0.082 0.918 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.244 10.650 -13.943 22.599 hybrid contribution 0.344 -0.355 0.513 0.712 sum -13.901 10.295 -13.430 21.899 Atomic orbital electron populations 1.21820 0.96158 1.01438 1.01667 1.21689 0.95644 0.96558 1.02347 1.21124 0.95262 0.96232 0.97753 0.91401 1.21591 1.00135 0.99061 0.94465 1.21580 0.95613 1.00865 0.97874 1.21580 0.95452 1.00989 0.97122 1.21396 0.94206 1.00519 0.95602 0.90410 1.21230 0.91928 0.94854 0.90890 1.44576 1.03561 1.56066 1.34135 1.17489 0.82826 0.92198 0.92725 1.20132 0.93351 1.11645 1.04400 1.20371 0.94025 0.95770 0.95840 1.20020 0.98741 1.07194 1.00017 1.18801 0.90856 0.88095 0.87959 1.83579 1.37359 1.57763 1.33680 1.20751 0.91012 1.33805 1.00551 0.87761 1.24454 0.99939 0.95617 0.94057 1.69642 1.35188 1.35892 1.11507 0.86194 0.83868 0.77637 0.79284 1.19950 1.20906 1.18334 1.20614 0.95310 1.11095 1.04509 1.21531 0.94744 1.00529 0.97586 0.92982 0.92537 0.93042 0.92176 0.91185 0.92173 0.92017 0.92174 0.91663 0.91647 0.91911 0.92838 0.92873 0.77032 0.87732 0.87105 0.86991 0.91196 0.85276 0.91750 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.67 37.15 0.36 -0.69 16 2 C -0.13 -0.94 4.69 -26.74 -0.13 -1.07 16 3 C -0.09 -0.63 2.66 -90.62 -0.24 -0.87 16 4 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 5 C -0.12 -0.86 5.21 -26.73 -0.14 -1.00 16 6 C -0.12 -1.03 5.65 -26.73 -0.15 -1.18 16 7 C -0.11 -1.10 5.08 -26.73 -0.14 -1.24 16 8 C -0.10 -0.93 1.95 -90.62 -0.18 -1.11 16 9 H 0.08 0.77 6.54 -51.93 -0.34 0.43 16 10 C 0.14 1.60 4.30 -4.04 -0.02 1.58 16 11 N -0.75 -11.30 5.46 -58.66 -0.32 -11.62 16 12 C 0.25 4.69 6.65 -83.82 -0.56 4.13 16 13 C -0.27 -4.80 9.31 -39.33 -0.37 -5.16 16 14 C -0.04 -0.74 10.03 -39.64 -0.40 -1.13 16 15 C -0.24 -4.98 9.99 -39.35 -0.39 -5.37 16 16 C 0.20 4.70 6.64 -39.13 -0.26 4.44 16 17 O -0.22 -5.95 8.58 0.06 0.00 -5.95 16 18 C -0.39 -11.09 9.95 30.88 0.31 -10.79 16 19 H 0.11 3.07 5.43 -52.48 -0.29 2.78 16 20 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 21 N -0.88 -25.90 13.96 55.48 0.77 -25.13 16 22 Si 0.90 22.11 28.62 -169.99 -4.86 17.25 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 26 C -0.29 -6.50 9.01 -39.20 -0.35 -6.86 16 27 C -0.11 -0.85 4.73 -26.73 -0.13 -0.97 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.58 4.83 -51.93 -0.25 0.33 16 33 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.56 6.32 -51.92 -0.33 0.23 16 37 H 0.06 0.72 7.18 -51.93 -0.37 0.34 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.64 7.95 -51.93 -0.41 0.23 16 40 H 0.05 0.63 7.95 -51.93 -0.41 0.22 16 41 H 0.40 5.73 7.66 -40.82 -0.31 5.42 16 42 H 0.10 1.59 6.73 -52.48 -0.35 1.24 16 43 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 44 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 45 H 0.28 7.53 8.31 -40.82 -0.34 7.20 16 46 H 0.13 3.03 5.64 -52.49 -0.30 2.74 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -29.73 366.02 -9.60 -39.33 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.83 Total: 6.22 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -2.87 Total: -25.60 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.45 Total: -36.75 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: 0.00 Total: -5.95 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.86 Total: 17.25 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.73 -9.60 -39.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394557583.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.524 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds