Wall clock time and date at job start Tue Mar 31 2020 10:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47016 * 2 1 4 4 H 1.08993 * 109.47605 * 304.99709 * 3 2 1 5 5 C 1.53003 * 109.47147 * 64.99937 * 3 2 1 6 6 C 1.52995 * 109.47296 * 60.00213 * 5 3 2 7 7 C 1.53004 * 109.47377 * 59.99882 * 6 5 3 8 8 C 1.53003 * 109.47003 * 300.00296 * 7 6 5 9 9 H 1.09000 * 109.46816 * 299.99533 * 8 7 6 10 10 C 1.52994 * 109.46948 * 180.02562 * 8 7 6 11 11 N 1.46502 * 109.47383 * 64.99694 * 10 8 7 12 12 C 1.39671 * 119.99851 * 179.97438 * 11 10 8 13 13 C 1.39000 * 120.04447 * 359.97438 * 12 11 10 14 14 C 1.38146 * 120.06681 * 180.02562 * 13 12 11 15 15 C 1.38174 * 120.14307 * 0.02562 * 14 13 12 16 16 C 1.38920 * 120.07774 * 359.97438 * 15 14 13 17 17 O 1.35742 * 120.03259 * 179.97438 * 16 15 14 18 18 C 1.34833 * 117.00244 * 174.46562 * 17 16 15 19 19 H 1.08004 * 119.99713 * 5.05912 * 18 17 16 20 20 C 1.38650 * 120.00548 * 185.05704 * 18 17 16 21 21 N 1.31551 * 120.00621 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99693 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46825 * 89.99928 * 22 20 18 24 24 H 1.48493 * 109.47022 * 210.00130 * 22 20 18 25 25 H 1.48497 * 109.46933 * 330.00252 * 22 20 18 26 26 C 1.38749 * 120.03648 * 180.02562 * 12 11 10 27 27 C 1.52995 * 109.47296 * 59.99654 * 8 7 6 28 28 H 1.09004 * 109.47057 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47553 * 299.99949 * 1 2 3 30 30 H 1.08997 * 109.47107 * 60.00118 * 1 2 3 31 31 H 1.09000 * 109.47553 * 240.00051 * 2 1 3 32 32 H 1.09007 * 109.47152 * 119.99954 * 2 1 3 33 33 H 1.09007 * 109.47150 * 180.02562 * 5 3 2 34 34 H 1.09000 * 109.46796 * 299.99826 * 5 3 2 35 35 H 1.08999 * 109.47384 * 180.02562 * 6 5 3 36 36 H 1.09007 * 109.47095 * 300.00124 * 6 5 3 37 37 H 1.09004 * 109.46857 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.47221 * 60.00172 * 7 6 5 39 39 H 1.09000 * 109.47368 * 304.99523 * 10 8 7 40 40 H 1.09000 * 109.46963 * 185.00006 * 10 8 7 41 41 H 0.96994 * 119.99851 * 0.02562 * 11 10 8 42 42 H 1.08006 * 119.97076 * 0.02562 * 13 12 11 43 43 H 1.08004 * 119.93281 * 180.27315 * 14 13 12 44 44 H 1.07999 * 119.96513 * 180.02562 * 15 14 13 45 45 H 0.96994 * 120.00478 * 180.02562 * 21 20 18 46 46 H 1.08002 * 120.07280 * 359.95665 * 26 12 11 47 47 H 1.09004 * 109.46613 * 59.99908 * 27 8 7 48 48 H 1.08999 * 109.47384 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1265 1.3074 6 6 2.2452 1.3700 2.4890 7 6 3.7700 1.3719 2.3633 8 6 4.1748 0.6878 1.0560 9 1 3.8115 -0.3399 1.0560 10 6 5.6996 0.6891 0.9306 11 7 6.2778 -0.1354 1.9947 12 6 7.6633 -0.2870 2.0858 13 6 8.4943 0.3434 1.1671 14 6 9.8647 0.1933 1.2564 15 6 10.4137 -0.5839 2.2583 16 6 9.5887 -1.2167 3.1797 17 8 10.1290 -1.9804 4.1632 18 6 9.2831 -2.4722 5.0909 19 1 8.2189 -2.3213 4.9853 20 6 9.7794 -3.1715 6.1804 21 7 8.9541 -3.6509 7.0858 22 14 11.6201 -3.4331 6.3627 23 1 12.2061 -2.3071 7.1334 24 1 11.8700 -4.7081 7.0816 25 1 12.2472 -3.4918 5.0179 26 6 8.2117 -1.0681 3.0929 27 6 3.5647 1.4443 -0.1257 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9980 3.1544 1.3072 34 1 0.5488 2.1252 1.3969 35 1 1.9564 1.8571 3.4204 36 1 1.8819 0.3423 2.4890 37 1 4.2046 0.8324 3.2050 38 1 4.1333 2.3995 2.3633 39 1 6.0707 1.7101 1.0199 40 1 5.9847 0.2824 -0.0397 41 1 5.6985 -0.5765 2.6354 42 1 8.0682 0.9513 0.3825 43 1 10.5085 0.6878 0.5441 44 1 11.4854 -0.6989 2.3257 45 1 9.3013 -4.1398 7.8482 46 1 7.5683 -1.5592 3.8080 47 1 3.9281 2.4720 -0.1256 48 1 3.8535 0.9573 -1.0571 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394557583.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:45 Heat of formation + Delta-G solvation = -49.000755 kcal Electronic energy + Delta-G solvation = -24529.702259 eV Core-core repulsion = 21162.028420 eV Total energy + Delta-G solvation = -3367.673839 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.95705 -40.44468 -38.73192 -36.40708 -34.45991 -33.99221 -32.44183 -30.90153 -30.42389 -29.36611 -27.13358 -26.36445 -24.29595 -23.50595 -23.09143 -22.47078 -21.59679 -19.79123 -19.38401 -18.98423 -17.44665 -16.81119 -16.50514 -16.29816 -15.97712 -15.77136 -15.66664 -15.51045 -15.21738 -14.95077 -14.61200 -14.45829 -14.09876 -14.08307 -13.85456 -13.60596 -13.14385 -13.00965 -12.89386 -12.81232 -12.54849 -12.53832 -12.35654 -12.20023 -12.00068 -11.93300 -11.82589 -11.51272 -11.38766 -11.04154 -10.95972 -10.83595 -10.80209 -10.63546 -9.17163 -8.48638 -8.23893 -6.21059 0.74075 0.89104 1.31343 1.36422 1.52886 2.29367 2.56843 2.82815 3.15363 3.26640 3.67635 3.74326 3.79741 4.13268 4.18198 4.24896 4.29817 4.36930 4.40960 4.46599 4.53505 4.57275 4.59982 4.69715 4.75401 4.77885 4.79241 4.81673 4.89226 4.96587 5.01112 5.06025 5.08967 5.18858 5.20248 5.25670 5.31260 5.34133 5.43974 5.44622 5.46945 5.53754 5.54336 5.66906 5.75782 5.84875 5.91039 6.18438 6.60841 6.82702 6.86501 7.63700 8.63268 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.002839 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.440454 B = 9861.849907 C =10830.383395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.082 4.082 4 H 0.079 0.921 5 C -0.112 4.112 6 C -0.120 4.120 7 C -0.113 4.113 8 C -0.090 4.090 9 H 0.072 0.928 10 C 0.133 3.867 11 N -0.746 5.746 12 C 0.252 3.748 13 C -0.258 4.258 14 C -0.026 4.026 15 C -0.252 4.252 16 C 0.158 3.842 17 O -0.246 6.246 18 C -0.396 4.396 19 H 0.078 0.922 20 C 0.009 3.991 21 N -0.926 5.926 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.267 1.267 25 H -0.263 1.263 26 C -0.314 4.314 27 C -0.102 4.102 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.395 0.605 42 H 0.142 0.858 43 H 0.158 0.842 44 H 0.121 0.879 45 H 0.284 0.716 46 H 0.101 0.899 47 H 0.070 0.930 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 12.757 -16.876 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.100 4.100 4 H 0.097 0.903 5 C -0.149 4.149 6 C -0.158 4.158 7 C -0.151 4.151 8 C -0.108 4.108 9 H 0.090 0.910 10 C 0.009 3.991 11 N -0.375 5.375 12 C 0.147 3.853 13 C -0.281 4.281 14 C -0.045 4.045 15 C -0.273 4.273 16 C 0.109 3.891 17 O -0.153 6.153 18 C -0.472 4.472 19 H 0.095 0.905 20 C -0.189 4.189 21 N -0.567 5.567 22 Si 0.793 3.207 23 H -0.191 1.191 24 H -0.191 1.191 25 H -0.188 1.188 26 C -0.338 4.338 27 C -0.140 4.140 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.229 0.771 42 H 0.160 0.840 43 H 0.175 0.825 44 H 0.139 0.861 45 H 0.093 0.907 46 H 0.119 0.881 47 H 0.089 0.911 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.207 12.709 -16.820 25.421 hybrid contribution 0.125 -0.805 1.162 1.419 sum -14.082 11.904 -15.658 24.190 Atomic orbital electron populations 1.21808 0.95619 1.01503 1.02044 1.21677 0.96150 0.96658 1.01764 1.21109 0.94796 0.96086 0.98012 0.90257 1.21572 1.00515 0.98952 0.93887 1.21556 0.94690 1.00937 0.98579 1.21553 0.96339 1.00588 0.96575 1.21320 0.92677 1.00558 0.96284 0.90973 1.21474 0.93245 0.94428 0.89913 1.44788 1.02285 1.55735 1.34713 1.17618 0.84698 0.91161 0.91818 1.20613 0.93297 1.10223 1.03943 1.20890 0.94740 0.93864 0.94986 1.20318 0.99121 1.07637 1.00218 1.19402 0.92160 0.89211 0.88365 1.83519 1.37138 1.59944 1.34682 1.20684 0.90385 1.34473 1.01676 0.90490 1.25282 1.04633 0.95390 0.93621 1.69727 1.37143 1.37386 1.12430 0.85213 0.78080 0.78358 0.79030 1.19057 1.19134 1.18757 1.20574 0.94835 1.12702 1.05674 1.21515 0.95062 1.00588 0.96812 0.93149 0.92478 0.92309 0.92207 0.92332 0.91840 0.91291 0.92260 0.92032 0.93663 0.91922 0.92122 0.91926 0.77085 0.84043 0.82455 0.86056 0.90651 0.88079 0.91093 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.67 71.98 0.70 -1.13 16 2 C -0.13 -1.67 4.69 30.59 0.14 -1.53 16 3 C -0.08 -1.00 2.66 -10.79 -0.03 -1.02 16 4 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 5 C -0.11 -1.44 5.21 30.59 0.16 -1.28 16 6 C -0.12 -1.92 5.65 30.59 0.17 -1.74 16 7 C -0.11 -2.09 5.08 30.60 0.16 -1.93 16 8 C -0.09 -1.54 1.95 -10.80 -0.02 -1.56 16 9 H 0.07 1.36 6.54 -2.39 -0.02 1.34 16 10 C 0.13 2.80 4.30 86.38 0.37 3.17 16 11 N -0.75 -21.83 5.46 -339.49 -1.85 -23.69 16 12 C 0.25 9.23 6.65 38.20 0.25 9.49 16 13 C -0.26 -8.16 9.31 22.43 0.21 -7.96 16 14 C -0.03 -0.84 10.03 22.23 0.22 -0.62 16 15 C -0.25 -10.22 9.99 22.42 0.22 -10.00 16 16 C 0.16 7.84 6.64 22.56 0.15 7.99 16 17 O -0.25 -13.95 8.58 -22.69 -0.19 -14.14 16 18 C -0.40 -24.18 9.95 67.92 0.68 -23.51 16 19 H 0.08 4.95 5.43 -2.91 -0.02 4.94 16 20 C 0.01 0.51 5.49 84.83 0.47 0.98 16 21 N -0.93 -56.60 13.96 21.61 0.30 -56.30 16 22 Si 0.97 46.76 28.62 68.60 1.96 48.73 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 26 C -0.31 -14.60 9.01 22.52 0.20 -14.39 16 27 C -0.10 -1.34 4.73 30.59 0.14 -1.20 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.67 6.56 -2.39 -0.02 0.66 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.92 4.83 -2.38 -0.01 0.90 16 33 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.07 0.81 6.56 -2.39 -0.02 0.79 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.03 6.32 -2.38 -0.02 1.01 16 37 H 0.04 1.01 7.18 -2.38 -0.02 0.99 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.24 7.95 -2.39 -0.02 1.22 16 40 H 0.06 1.26 7.95 -2.39 -0.02 1.24 16 41 H 0.39 11.73 7.66 -92.71 -0.71 11.02 16 42 H 0.14 3.50 6.73 -2.91 -0.02 3.48 16 43 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 44 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 45 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 46 H 0.10 5.20 5.64 -2.91 -0.02 5.18 16 47 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -67.67 366.02 4.65 -63.02 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.24 Total: 28.64 kcal Atomic # 6 Polarization: -50.45 SS G_CDS: 4.20 Total: -46.25 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.55 Total: -79.98 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.19 Total: -14.14 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.96 Total: 48.73 kcal Total: -67.67 4.65 -63.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394557583.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.016 kcal (2) G-P(sol) polarization free energy of solvation -67.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds