Wall clock time and date at job start Tue Mar 31 2020 09:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47464 * 2 1 4 4 C 1.52996 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46823 * 304.99078 * 4 3 2 6 6 N 1.46491 * 109.47572 * 64.99792 * 4 3 2 7 7 C 1.39678 * 119.99957 * 217.37049 * 6 4 3 8 8 C 1.39005 * 120.04003 * 359.21863 * 7 6 4 9 9 C 1.38153 * 120.06100 * 179.69595 * 8 7 6 10 10 C 1.38164 * 120.14197 * 0.60164 * 9 8 7 11 11 C 1.38918 * 120.08153 * 359.67454 * 10 9 8 12 12 O 1.35749 * 120.03428 * 180.02562 * 11 10 9 13 13 C 1.34831 * 117.00207 * 185.66604 * 12 11 10 14 14 H 1.08007 * 119.99736 * 5.21506 * 13 12 11 15 15 C 1.38652 * 120.00398 * 185.21245 * 13 12 11 16 16 N 1.31563 * 119.99478 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00344 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47273 * 59.99738 * 17 15 13 19 19 H 1.48493 * 109.47210 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46910 * 300.00307 * 17 15 13 21 21 C 1.38751 * 120.03830 * 179.49097 * 7 6 4 22 22 C 1.53000 * 109.46755 * 185.00001 * 4 3 2 23 23 H 1.09005 * 115.55297 * 319.91807 * 22 4 3 24 24 C 1.53003 * 117.50015 * 174.25115 * 22 4 3 25 25 C 1.52998 * 59.99928 * 252.50752 * 24 22 4 26 26 C 1.53005 * 117.49780 * 252.50886 * 25 24 22 27 27 C 1.52999 * 117.49911 * 107.48965 * 25 24 22 28 28 H 1.08994 * 109.47585 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46970 * 300.00547 * 1 2 3 30 30 H 1.09007 * 109.46731 * 59.99882 * 1 2 3 31 31 H 1.09008 * 109.47168 * 119.99811 * 2 1 3 32 32 H 1.08999 * 109.47436 * 239.99706 * 2 1 3 33 33 H 1.08997 * 109.46516 * 299.99604 * 3 2 1 34 34 H 1.08999 * 109.47034 * 59.99460 * 3 2 1 35 35 H 0.96995 * 120.00237 * 37.36921 * 6 4 3 36 36 H 1.07998 * 119.96928 * 359.97360 * 8 7 6 37 37 H 1.08002 * 119.92856 * 180.32060 * 9 8 7 38 38 H 1.08005 * 119.96511 * 179.69881 * 10 9 8 39 39 H 0.96997 * 119.99397 * 179.97438 * 16 15 13 40 40 H 1.07997 * 120.07420 * 0.02562 * 21 7 6 41 41 H 1.09006 * 117.49803 * 359.97438 * 24 22 4 42 42 H 1.08997 * 117.50281 * 144.99591 * 24 22 4 43 43 H 1.08994 * 109.47072 * 128.62586 * 26 25 24 44 44 H 1.09009 * 109.46826 * 248.62365 * 26 25 24 45 45 H 1.08999 * 109.46935 * 8.61912 * 26 25 24 46 46 H 1.08997 * 109.47139 * 356.59532 * 27 25 24 47 47 H 1.08999 * 109.47247 * 116.59581 * 27 25 24 48 48 H 1.08999 * 109.47045 * 236.59264 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9336 0.8529 0.8410 6 7 4.0579 0.8588 -1.2526 7 6 5.1970 0.0505 -1.2491 8 6 5.8777 -0.1875 -0.0608 9 6 7.0008 -0.9920 -0.0558 10 6 7.4582 -1.5523 -1.2330 11 6 6.7857 -1.3138 -2.4250 12 8 7.2356 -1.8652 -3.5810 13 6 6.6088 -1.5005 -4.7177 14 1 5.8453 -0.7370 -4.6923 15 6 6.9444 -2.1056 -5.9192 16 7 7.8741 -3.0359 -5.9501 17 14 6.0765 -1.5999 -7.4942 18 1 6.3066 -0.1542 -7.7439 19 1 6.6129 -2.3906 -8.6308 20 1 4.6194 -1.8530 -7.3596 21 6 5.6537 -0.5113 -2.4328 22 6 4.0801 2.8794 0.1251 23 1 3.5272 3.6261 -0.4449 24 6 5.5888 3.0826 0.2787 25 6 4.6609 3.3074 1.4743 26 6 4.4210 4.7511 1.9207 27 6 4.6871 2.2657 2.5946 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.6768 1.9562 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.5899 1.0337 -2.0840 36 1 5.5258 0.2532 0.8602 37 1 7.5251 -1.1797 0.8696 38 1 8.3393 -2.1769 -1.2266 39 1 8.1086 -3.4595 -6.7906 40 1 5.1294 -0.3241 -3.3583 41 1 6.2179 2.1925 0.2907 42 1 6.0284 3.9630 -0.1901 43 1 3.3493 4.9343 1.9973 44 1 4.8877 4.9133 2.8923 45 1 4.8552 5.4341 1.1905 46 1 5.3599 1.4534 2.3197 47 1 5.0373 2.7315 3.5157 48 1 3.6829 1.8702 2.7465 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397694678.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:27 Heat of formation + Delta-G solvation = 2.912989 kcal Electronic energy + Delta-G solvation = -25201.138204 eV Core-core repulsion = 21835.715514 eV Total energy + Delta-G solvation = -3365.422690 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.76664 -38.58455 -36.73268 -35.60867 -33.45963 -32.13609 -30.40498 -28.92570 -28.62581 -27.77202 -27.11489 -25.19229 -24.01847 -21.93889 -21.32423 -21.03940 -19.88786 -18.74398 -17.79519 -17.33765 -15.79241 -15.52529 -15.19884 -15.01491 -14.62002 -14.43618 -14.06346 -13.80481 -13.78175 -13.48893 -13.24702 -13.04244 -12.84956 -12.63670 -12.39822 -12.31623 -12.09321 -11.98130 -11.67422 -11.59082 -11.39288 -11.22706 -11.14442 -10.98819 -10.78485 -10.69884 -10.67224 -10.44915 -10.26491 -9.83303 -9.67519 -9.37228 -9.22154 -8.70856 -7.30181 -6.67123 -6.37551 -3.96475 2.44020 2.62663 3.16359 3.17827 3.20033 3.52168 4.02176 4.08480 4.44076 4.71710 4.77515 4.83906 4.93617 4.98108 5.03134 5.14741 5.20731 5.24948 5.40482 5.46238 5.47746 5.51075 5.62674 5.66611 5.70969 5.76794 5.79758 5.83961 5.85243 5.92805 5.99569 6.02196 6.02574 6.11012 6.17902 6.27966 6.31897 6.34326 6.36723 6.45665 6.71932 6.73014 7.11124 7.19751 7.44500 7.54360 7.74522 8.09026 8.10972 8.30056 9.08736 9.82238 10.80934 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.003797 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.756616 B = 7373.392141 C = 8072.180414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.122 4.122 4 C 0.179 3.821 5 H 0.090 0.910 6 N -0.742 5.742 7 C 0.258 3.742 8 C -0.285 4.285 9 C -0.040 4.040 10 C -0.239 4.239 11 C 0.191 3.809 12 O -0.179 6.179 13 C -0.388 4.388 14 H 0.089 0.911 15 C 0.038 3.962 16 N -0.865 5.865 17 Si 0.938 3.062 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.271 1.271 21 C -0.304 4.304 22 C -0.159 4.159 23 H 0.097 0.903 24 C -0.163 4.163 25 C -0.128 4.128 26 C -0.113 4.113 27 C -0.120 4.120 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.392 0.608 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.269 0.731 40 H 0.123 0.877 41 H 0.108 0.892 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.085 11.571 14.317 21.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.160 4.160 4 C 0.073 3.927 5 H 0.108 0.892 6 N -0.371 5.371 7 C 0.156 3.844 8 C -0.308 4.308 9 C -0.059 4.059 10 C -0.260 4.260 11 C 0.136 3.864 12 O -0.082 6.082 13 C -0.464 4.464 14 H 0.107 0.893 15 C -0.165 4.165 16 N -0.501 5.501 17 Si 0.763 3.237 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.196 1.196 21 C -0.328 4.328 22 C -0.179 4.179 23 H 0.115 0.885 24 C -0.200 4.200 25 C -0.129 4.129 26 C -0.170 4.170 27 C -0.176 4.176 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.226 0.774 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.079 0.921 40 H 0.140 0.860 41 H 0.126 0.874 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.819 11.294 14.260 21.165 hybrid contribution -0.677 0.463 -1.269 1.511 sum -11.496 11.757 12.991 20.956 Atomic orbital electron populations 1.21770 0.96201 1.01480 1.01373 1.21500 0.95243 0.96603 1.02796 1.21868 0.94663 0.97277 1.02216 1.20443 0.92641 0.90908 0.88684 0.89196 1.44567 1.29563 1.54502 1.08514 1.17441 0.85447 0.88169 0.93330 1.20154 1.02456 1.12208 0.95970 1.20360 0.94728 0.94625 0.96185 1.20005 1.04516 1.10565 0.90910 1.19083 0.90295 0.89688 0.87323 1.83996 1.53038 1.59465 1.11734 1.21236 1.21035 1.21368 0.82770 0.89312 1.25254 0.96850 0.95819 0.98615 1.70035 1.28741 1.24005 1.27303 0.85824 0.79165 0.78694 0.79977 1.19612 1.20338 1.19640 1.20499 1.03446 1.11548 0.97264 1.22970 0.97096 0.98391 0.99458 0.88507 1.23321 0.92869 1.03641 1.00131 1.21550 1.05489 0.96152 0.89731 1.21342 1.01258 0.93352 1.01025 1.21433 1.01776 0.97709 0.96724 0.92871 0.93085 0.92946 0.92174 0.91258 0.91910 0.91156 0.77393 0.87614 0.87424 0.87099 0.92111 0.85966 0.87393 0.89535 0.92565 0.92318 0.92697 0.91881 0.92299 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.12 -1.31 5.82 -26.73 -0.16 -1.47 16 3 C -0.12 -1.21 4.83 -26.73 -0.13 -1.34 16 4 C 0.18 2.11 1.89 -67.94 -0.13 1.98 16 5 H 0.09 1.12 4.00 -51.93 -0.21 0.91 16 6 N -0.74 -10.76 4.58 -52.19 -0.24 -11.00 16 7 C 0.26 4.71 6.61 -83.81 -0.55 4.15 16 8 C -0.29 -4.95 7.47 -39.33 -0.29 -5.24 16 9 C -0.04 -0.73 10.03 -39.64 -0.40 -1.13 16 10 C -0.24 -5.24 9.99 -39.36 -0.39 -5.64 16 11 C 0.19 4.73 6.64 -39.13 -0.26 4.47 16 12 O -0.18 -5.24 9.76 0.05 0.00 -5.24 16 13 C -0.39 -11.05 9.44 30.89 0.29 -10.75 16 14 H 0.09 2.35 5.29 -52.48 -0.28 2.07 16 15 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 16 N -0.87 -25.84 13.67 55.48 0.76 -25.08 16 17 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 C -0.30 -6.71 8.98 -39.20 -0.35 -7.06 16 22 C -0.16 -1.79 5.03 -90.62 -0.46 -2.25 16 23 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 24 C -0.16 -2.02 9.51 -26.73 -0.25 -2.27 16 25 C -0.13 -1.31 2.70 -154.51 -0.42 -1.73 16 26 C -0.11 -0.97 9.85 37.16 0.37 -0.60 16 27 C -0.12 -1.14 8.40 37.16 0.31 -0.83 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.07 0.87 7.75 -51.93 -0.40 0.46 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.39 5.48 8.74 -40.82 -0.36 5.12 16 36 H 0.11 1.59 3.83 -52.49 -0.20 1.39 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.11 2.38 8.06 -52.48 -0.42 1.96 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.12 2.74 5.71 -52.49 -0.30 2.44 16 41 H 0.11 1.55 5.62 -51.93 -0.29 1.26 16 42 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.46 7.88 -51.92 -0.41 0.05 16 45 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 46 H 0.06 0.66 5.85 -51.93 -0.30 0.36 16 47 H 0.06 0.49 7.85 -51.93 -0.41 0.08 16 48 H 0.06 0.52 7.84 -51.93 -0.41 0.11 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -30.36 377.33 -9.12 -39.48 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.76 Total: 10.01 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: -2.55 Total: -29.73 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.52 Total: -36.08 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: 0.00 Total: -5.24 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.36 -9.12 -39.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397694678.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.395 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds