Wall clock time and date at job start Tue Mar 31 2020 09:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47464 * 2 1 4 4 C 1.52996 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46823 * 304.99078 * 4 3 2 6 6 N 1.46491 * 109.47572 * 64.99792 * 4 3 2 7 7 C 1.39678 * 119.99957 * 217.37049 * 6 4 3 8 8 C 1.39005 * 120.04003 * 359.21863 * 7 6 4 9 9 C 1.38153 * 120.06100 * 179.69595 * 8 7 6 10 10 C 1.38164 * 120.14197 * 0.60164 * 9 8 7 11 11 C 1.38918 * 120.08153 * 359.67454 * 10 9 8 12 12 O 1.35749 * 120.03428 * 180.02562 * 11 10 9 13 13 C 1.34831 * 117.00207 * 185.66604 * 12 11 10 14 14 H 1.08007 * 119.99736 * 5.21506 * 13 12 11 15 15 C 1.38652 * 120.00398 * 185.21245 * 13 12 11 16 16 N 1.31563 * 119.99478 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00344 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47273 * 59.99738 * 17 15 13 19 19 H 1.48493 * 109.47210 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46910 * 300.00307 * 17 15 13 21 21 C 1.38751 * 120.03830 * 179.49097 * 7 6 4 22 22 C 1.53000 * 109.46755 * 185.00001 * 4 3 2 23 23 H 1.09005 * 115.55297 * 319.91807 * 22 4 3 24 24 C 1.53003 * 117.50015 * 174.25115 * 22 4 3 25 25 C 1.52998 * 59.99928 * 252.50752 * 24 22 4 26 26 C 1.53005 * 117.49780 * 252.50886 * 25 24 22 27 27 C 1.52999 * 117.49911 * 107.48965 * 25 24 22 28 28 H 1.08994 * 109.47585 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46970 * 300.00547 * 1 2 3 30 30 H 1.09007 * 109.46731 * 59.99882 * 1 2 3 31 31 H 1.09008 * 109.47168 * 119.99811 * 2 1 3 32 32 H 1.08999 * 109.47436 * 239.99706 * 2 1 3 33 33 H 1.08997 * 109.46516 * 299.99604 * 3 2 1 34 34 H 1.08999 * 109.47034 * 59.99460 * 3 2 1 35 35 H 0.96995 * 120.00237 * 37.36921 * 6 4 3 36 36 H 1.07998 * 119.96928 * 359.97360 * 8 7 6 37 37 H 1.08002 * 119.92856 * 180.32060 * 9 8 7 38 38 H 1.08005 * 119.96511 * 179.69881 * 10 9 8 39 39 H 0.96997 * 119.99397 * 179.97438 * 16 15 13 40 40 H 1.07997 * 120.07420 * 0.02562 * 21 7 6 41 41 H 1.09006 * 117.49803 * 359.97438 * 24 22 4 42 42 H 1.08997 * 117.50281 * 144.99591 * 24 22 4 43 43 H 1.08994 * 109.47072 * 128.62586 * 26 25 24 44 44 H 1.09009 * 109.46826 * 248.62365 * 26 25 24 45 45 H 1.08999 * 109.46935 * 8.61912 * 26 25 24 46 46 H 1.08997 * 109.47139 * 356.59532 * 27 25 24 47 47 H 1.08999 * 109.47247 * 116.59581 * 27 25 24 48 48 H 1.08999 * 109.47045 * 236.59264 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9336 0.8529 0.8410 6 7 4.0579 0.8588 -1.2526 7 6 5.1970 0.0505 -1.2491 8 6 5.8777 -0.1875 -0.0608 9 6 7.0008 -0.9920 -0.0558 10 6 7.4582 -1.5523 -1.2330 11 6 6.7857 -1.3138 -2.4250 12 8 7.2356 -1.8652 -3.5810 13 6 6.6088 -1.5005 -4.7177 14 1 5.8453 -0.7370 -4.6923 15 6 6.9444 -2.1056 -5.9192 16 7 7.8741 -3.0359 -5.9501 17 14 6.0765 -1.5999 -7.4942 18 1 6.3066 -0.1542 -7.7439 19 1 6.6129 -2.3906 -8.6308 20 1 4.6194 -1.8530 -7.3596 21 6 5.6537 -0.5113 -2.4328 22 6 4.0801 2.8794 0.1251 23 1 3.5272 3.6261 -0.4449 24 6 5.5888 3.0826 0.2787 25 6 4.6609 3.3074 1.4743 26 6 4.4210 4.7511 1.9207 27 6 4.6871 2.2657 2.5946 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.6768 1.9562 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.5899 1.0337 -2.0840 36 1 5.5258 0.2532 0.8602 37 1 7.5251 -1.1797 0.8696 38 1 8.3393 -2.1769 -1.2266 39 1 8.1086 -3.4595 -6.7906 40 1 5.1294 -0.3241 -3.3583 41 1 6.2179 2.1925 0.2907 42 1 6.0284 3.9630 -0.1901 43 1 3.3493 4.9343 1.9973 44 1 4.8877 4.9133 2.8923 45 1 4.8552 5.4341 1.1905 46 1 5.3599 1.4534 2.3197 47 1 5.0373 2.7315 3.5157 48 1 3.6829 1.8702 2.7465 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397694678.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:24 Heat of formation + Delta-G solvation = -12.983162 kcal Electronic energy + Delta-G solvation = -25201.827512 eV Core-core repulsion = 21835.715514 eV Total energy + Delta-G solvation = -3366.111999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.04962 -40.09319 -38.25333 -36.73493 -34.71784 -34.11517 -31.57412 -30.40673 -29.67284 -28.74569 -28.20179 -27.18238 -24.93590 -23.50775 -22.78403 -21.88818 -21.22638 -19.72721 -19.48128 -19.03871 -17.13217 -17.04634 -16.47287 -16.12220 -16.04119 -15.62838 -15.44908 -15.33815 -15.28707 -14.57455 -14.41176 -14.19573 -14.02805 -13.85210 -13.49150 -13.45915 -13.30408 -13.01106 -12.84313 -12.80184 -12.64256 -12.47677 -12.38078 -12.18824 -12.12475 -11.96685 -11.76109 -11.70581 -11.44433 -11.31136 -10.92986 -10.71496 -10.64794 -10.31962 -9.08455 -8.44795 -8.14743 -6.12857 0.79264 0.95581 1.33329 1.45205 1.49869 2.18621 2.43333 2.90224 3.03996 3.29233 3.55819 3.60759 3.94195 3.95441 4.06467 4.17476 4.22147 4.27043 4.29567 4.30652 4.48692 4.62230 4.65154 4.70091 4.77275 4.83993 4.85396 4.90641 4.95795 5.01589 5.07031 5.09676 5.12194 5.13445 5.14607 5.16728 5.18716 5.27449 5.32698 5.34045 5.41207 5.49184 5.49584 5.57876 5.77959 5.83524 6.06357 6.14744 6.67065 6.92889 7.00806 7.84820 8.78824 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.003797 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.756616 B = 7373.392141 C = 8072.180414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.114 4.114 4 C 0.178 3.822 5 H 0.088 0.912 6 N -0.731 5.731 7 C 0.269 3.731 8 C -0.266 4.266 9 C -0.027 4.027 10 C -0.265 4.265 11 C 0.154 3.846 12 O -0.233 6.233 13 C -0.409 4.409 14 H 0.097 0.903 15 C -0.024 4.024 16 N -0.923 5.923 17 Si 1.017 2.983 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.258 1.258 21 C -0.318 4.318 22 C -0.160 4.160 23 H 0.103 0.897 24 C -0.185 4.185 25 C -0.108 4.108 26 C -0.113 4.113 27 C -0.123 4.123 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.396 0.604 36 H 0.140 0.860 37 H 0.148 0.852 38 H 0.103 0.897 39 H 0.272 0.728 40 H 0.111 0.889 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.072 0.928 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.729 14.032 16.705 25.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.152 4.152 4 C 0.073 3.927 5 H 0.106 0.894 6 N -0.359 5.359 7 C 0.164 3.836 8 C -0.288 4.288 9 C -0.046 4.046 10 C -0.286 4.286 11 C 0.103 3.897 12 O -0.140 6.140 13 C -0.486 4.486 14 H 0.115 0.885 15 C -0.221 4.221 16 N -0.561 5.561 17 Si 0.836 3.164 18 H -0.183 1.183 19 H -0.195 1.195 20 H -0.182 1.182 21 C -0.342 4.342 22 C -0.179 4.179 23 H 0.121 0.879 24 C -0.222 4.222 25 C -0.108 4.108 26 C -0.170 4.170 27 C -0.180 4.180 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.230 0.770 36 H 0.157 0.843 37 H 0.166 0.834 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.128 0.872 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.511 13.805 16.710 25.542 hybrid contribution 0.060 -0.158 -1.666 1.675 sum -13.451 13.647 15.044 24.362 Atomic orbital electron populations 1.21741 0.94899 1.01681 1.02215 1.21481 0.96439 0.96760 1.01475 1.21823 0.92766 0.97047 1.03532 1.20656 0.94099 0.91060 0.86867 0.89371 1.44729 1.27960 1.53106 1.10117 1.17475 0.86229 0.87521 0.92331 1.20571 1.01192 1.10320 0.96736 1.20789 0.94596 0.92915 0.96253 1.20208 1.04924 1.11977 0.91456 1.19637 0.91984 0.90934 0.87144 1.83951 1.55129 1.61863 1.13035 1.21719 1.21354 1.22043 0.83458 0.88543 1.26563 0.97569 0.95619 1.02306 1.70188 1.31263 1.26198 1.28458 0.84679 0.78226 0.78791 0.74689 1.18310 1.19503 1.18223 1.20497 1.03174 1.12213 0.98360 1.22942 0.96142 0.97931 1.00902 0.87856 1.23265 0.93288 1.02829 1.02849 1.21652 1.02636 0.97416 0.89119 1.21376 1.02230 0.91949 1.01455 1.21494 1.02301 0.97243 0.96950 0.93092 0.91579 0.92741 0.92334 0.93756 0.91391 0.88962 0.77000 0.84298 0.83395 0.87831 0.91915 0.87167 0.89503 0.89831 0.91298 0.91239 0.92961 0.92932 0.90858 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.58 16 2 C -0.12 -2.32 5.82 30.60 0.18 -2.14 16 3 C -0.11 -1.86 4.83 30.59 0.15 -1.72 16 4 C 0.18 3.65 1.89 44.99 0.08 3.74 16 5 H 0.09 1.87 4.00 -2.39 -0.01 1.86 16 6 N -0.73 -20.08 4.58 -319.03 -1.46 -21.54 16 7 C 0.27 9.64 6.61 38.20 0.25 9.89 16 8 C -0.27 -8.68 7.47 22.43 0.17 -8.51 16 9 C -0.03 -0.95 10.03 22.23 0.22 -0.73 16 10 C -0.26 -12.00 9.99 22.42 0.22 -11.77 16 11 C 0.15 8.09 6.64 22.56 0.15 8.24 16 12 O -0.23 -14.67 9.76 -22.73 -0.22 -14.89 16 13 C -0.41 -24.74 9.44 67.92 0.64 -24.10 16 14 H 0.10 5.40 5.29 -2.91 -0.02 5.38 16 15 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 16 N -0.92 -58.20 13.67 21.61 0.30 -57.91 16 17 Si 1.02 44.11 29.55 68.60 2.03 46.14 16 18 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 C -0.32 -14.56 8.98 22.52 0.20 -14.35 16 22 C -0.16 -3.10 5.03 -10.79 -0.05 -3.15 16 23 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 24 C -0.19 -4.20 9.51 30.59 0.29 -3.91 16 25 C -0.11 -1.81 2.70 -52.18 -0.14 -1.95 16 26 C -0.11 -1.52 9.85 71.98 0.71 -0.81 16 27 C -0.12 -1.84 8.40 71.98 0.60 -1.24 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.04 1.05 7.75 -2.39 -0.02 1.03 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 35 H 0.40 10.59 8.74 -92.71 -0.81 9.78 16 36 H 0.14 3.67 3.83 -2.91 -0.01 3.66 16 37 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 38 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 39 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 40 H 0.11 5.20 5.71 -2.91 -0.02 5.18 16 41 H 0.09 2.34 5.62 -2.38 -0.01 2.33 16 42 H 0.08 1.92 8.05 -2.39 -0.02 1.90 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 0.81 7.88 -2.38 -0.02 0.79 16 45 H 0.05 0.74 7.90 -2.39 -0.02 0.72 16 46 H 0.05 0.90 5.85 -2.39 -0.01 0.89 16 47 H 0.07 0.91 7.85 -2.39 -0.02 0.89 16 48 H 0.07 0.91 7.84 -2.39 -0.02 0.90 16 Total: -1.00 -71.67 377.33 5.65 -66.03 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: 0.14 Total: 37.18 kcal Atomic # 6 Polarization: -59.86 SS G_CDS: 4.86 Total: -55.00 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -1.16 Total: -79.45 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.22 Total: -14.89 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -71.67 5.65 -66.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397694678.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.045 kcal (2) G-P(sol) polarization free energy of solvation -71.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds