Wall clock time and date at job start Tue Mar 31 2020 10:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46702 * 2 1 4 4 H 1.08992 * 109.51040 * 304.91233 * 3 2 1 5 5 C 1.53106 * 109.50461 * 184.77936 * 3 2 1 6 6 N 1.47012 * 109.25818 * 183.21798 * 5 3 2 7 7 C 1.46904 * 110.99715 * 182.39528 * 6 5 3 8 8 C 1.50697 * 109.46995 * 46.36736 * 7 6 5 9 9 C 1.38632 * 119.74791 * 269.72496 * 8 7 6 10 10 C 1.37623 * 120.24681 * 179.72514 * 9 8 7 11 11 C 1.40718 * 119.74543 * 0.52882 * 10 9 8 12 12 C 1.41389 * 120.24269 * 179.72790 * 11 10 9 13 13 H 1.08000 * 120.00021 * 24.39812 * 12 11 10 14 14 C 1.39950 * 119.99941 * 204.39646 * 12 11 10 15 15 N 1.30826 * 119.99417 * 17.85250 * 14 12 11 16 16 Si 1.86794 * 120.00329 * 197.85059 * 14 12 11 17 17 H 1.48495 * 109.47142 * 89.99636 * 16 14 12 18 18 H 1.48498 * 109.47280 * 210.00361 * 16 14 12 19 19 H 1.48507 * 109.46977 * 330.00136 * 16 14 12 20 20 C 1.40713 * 119.51128 * 359.74152 * 11 10 9 21 21 C 1.37620 * 119.74240 * 0.02562 * 20 11 10 22 22 C 1.47016 * 110.75390 * 58.61776 * 6 5 3 23 23 C 1.53095 * 109.25706 * 301.38395 * 22 6 5 24 24 H 1.09003 * 109.53958 * 176.80460 * 23 22 6 25 25 C 1.52999 * 109.50876 * 296.91189 * 23 22 6 26 26 C 1.52995 * 109.47103 * 184.78453 * 25 23 22 27 27 O 1.43014 * 109.50824 * 65.00378 * 3 2 1 28 28 H 1.09004 * 109.47230 * 59.99695 * 1 2 3 29 29 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47022 * 299.99906 * 1 2 3 31 31 H 1.09001 * 109.46745 * 120.00196 * 2 1 3 32 32 H 1.08998 * 109.47022 * 240.00094 * 2 1 3 33 33 H 1.08999 * 109.50729 * 303.15921 * 5 3 2 34 34 H 1.09003 * 109.50210 * 63.28639 * 5 3 2 35 35 H 1.09005 * 109.46534 * 166.36695 * 7 6 5 36 36 H 1.08991 * 109.46981 * 286.36382 * 7 6 5 37 37 H 1.08003 * 119.87581 * 359.97438 * 9 8 7 38 38 H 1.08001 * 120.12664 * 180.27625 * 10 9 8 39 39 H 0.97000 * 119.99352 * 180.02562 * 15 14 12 40 40 H 1.07998 * 120.13006 * 180.02562 * 20 11 10 41 41 H 1.08004 * 119.87519 * 179.97438 * 21 20 11 42 42 H 1.08991 * 109.50612 * 181.44676 * 22 6 5 43 43 H 1.09003 * 109.50027 * 61.32071 * 22 6 5 44 44 H 1.08996 * 109.46711 * 304.78539 * 25 23 22 45 45 H 1.08997 * 109.46852 * 64.78089 * 25 23 22 46 46 H 1.09004 * 109.47367 * 60.00333 * 26 25 23 47 47 H 1.09006 * 109.46963 * 179.97438 * 26 25 23 48 48 H 1.09001 * 109.47360 * 300.00133 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6069 1.9816 -0.8424 5 6 3.5662 1.4452 -0.1202 6 7 4.0564 2.8290 -0.0421 7 6 5.5148 2.8812 -0.2106 8 6 5.9160 2.0241 -1.3833 9 6 6.2232 0.6869 -1.1849 10 6 6.5853 -0.1066 -2.2494 11 6 6.6539 0.4470 -3.5413 12 6 7.0304 -0.3572 -4.6416 13 1 6.8878 -1.4270 -4.6024 14 6 7.5876 0.2331 -5.7816 15 7 8.0819 1.4427 -5.7165 16 14 7.6257 -0.7058 -7.3959 17 1 6.3845 -0.4253 -8.1612 18 1 8.8048 -0.2770 -8.1904 19 1 7.7183 -2.1620 -7.1195 20 6 6.3454 1.8069 -3.7300 21 6 5.9810 2.5803 -2.6516 22 6 3.6495 3.4551 1.2243 23 6 2.1224 3.4323 1.3311 24 1 1.8180 3.8439 2.2934 25 6 1.5187 4.2709 0.2027 26 6 0.0008 4.3460 0.3791 27 8 1.6620 2.0826 1.2218 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.9964 0.8602 0.6927 34 1 3.8567 1.0096 -1.0763 35 1 5.8230 3.9111 -0.3908 36 1 5.9983 2.5101 0.6930 37 1 6.1742 0.2653 -0.1918 38 1 6.8199 -1.1492 -2.0933 39 1 8.4678 1.8520 -6.5067 40 1 6.3944 2.2420 -4.7172 41 1 5.7441 3.6244 -2.7939 42 1 4.0007 4.4865 1.2497 43 1 4.0811 2.9022 2.0587 44 1 1.9382 5.2764 0.2331 45 1 1.7507 3.8093 -0.7570 46 1 -0.2311 4.8076 1.3389 47 1 -0.4292 4.9438 -0.4245 48 1 -0.4187 3.3404 0.3488 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399182604.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:30 Heat of formation + Delta-G solvation = -42.142490 kcal Electronic energy + Delta-G solvation = -25606.936076 eV Core-core repulsion = 22239.559634 eV Total energy + Delta-G solvation = -3367.376442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.00420 -37.79001 -35.56694 -34.58845 -33.55190 -32.38961 -30.51798 -29.46114 -29.07904 -27.81630 -25.57458 -24.08050 -23.38266 -22.17206 -21.27888 -20.98852 -19.72576 -19.10627 -17.31286 -16.61158 -16.15345 -15.38457 -15.09724 -14.87412 -14.67142 -14.12469 -13.97892 -13.70592 -13.55151 -13.43415 -13.33860 -12.98146 -12.57105 -12.37392 -12.05766 -11.95033 -11.77218 -11.59458 -11.54925 -11.44276 -11.11994 -11.01132 -10.97800 -10.95824 -10.87026 -10.66047 -10.39095 -10.33589 -10.01214 -9.62752 -9.38747 -9.24848 -9.15073 -7.98145 -7.47031 -7.29872 -6.78853 -4.37487 2.70877 3.04164 3.05827 3.08925 3.15380 3.86365 3.90989 4.21466 4.64355 4.84171 4.92149 5.06285 5.11757 5.23996 5.27308 5.41449 5.47450 5.49100 5.64119 5.66667 5.67894 5.74675 5.82170 5.86151 5.91743 5.98325 6.01711 6.02985 6.07433 6.18838 6.21595 6.31124 6.32732 6.34574 6.39709 6.45933 6.50765 6.93692 7.04840 7.27045 7.28478 7.35637 7.41511 7.44750 7.59154 7.85064 8.03229 8.11746 8.27691 8.62349 8.87185 8.95249 10.15569 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.003535 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.628372 B = 7919.871995 C = 8371.465689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.090 3.910 4 H 0.067 0.933 5 C 0.028 3.972 6 N -0.527 5.527 7 C 0.120 3.880 8 C -0.216 4.216 9 C -0.083 4.083 10 C -0.227 4.227 11 C 0.114 3.886 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.077 3.923 15 N -0.791 5.791 16 Si 0.907 3.093 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.168 4.168 21 C -0.078 4.078 22 C 0.021 3.979 23 C 0.097 3.903 24 H 0.097 0.903 25 C -0.147 4.147 26 C -0.148 4.148 27 O -0.377 6.377 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.032 0.968 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.022 0.978 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.280 0.720 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.035 0.965 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.049 0.951 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.076 3.364 9.422 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.085 0.915 5 C -0.100 4.100 6 N -0.252 5.252 7 C -0.006 4.006 8 C -0.218 4.218 9 C -0.102 4.102 10 C -0.247 4.247 11 C 0.111 3.889 12 C -0.492 4.492 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.416 5.416 16 Si 0.732 3.268 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.186 1.186 20 C -0.188 4.188 21 C -0.097 4.097 22 C -0.107 4.107 23 C 0.039 3.961 24 H 0.115 0.885 25 C -0.184 4.184 26 C -0.205 4.205 27 O -0.296 6.296 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.135 0.865 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.252 3.724 9.046 14.910 hybrid contribution 0.835 -0.608 -0.260 1.065 sum -10.417 3.116 8.786 13.979 Atomic orbital electron populations 1.21688 0.95431 1.01181 1.02014 1.21514 0.96414 0.94604 1.02842 1.22257 0.93679 0.93395 0.87388 0.91491 1.22822 0.94257 0.89787 1.03109 1.62390 1.13612 1.17426 1.31779 1.20761 0.85213 0.99040 0.95600 1.18838 1.14915 0.94215 0.93808 1.20362 0.99877 0.93415 0.96522 1.20927 1.12216 0.98579 0.92944 1.17618 0.87574 0.92292 0.91409 1.19616 1.35983 0.95245 0.98390 0.90479 1.25910 0.92700 0.94908 1.00626 1.69831 1.26705 1.14345 1.30753 0.86327 0.78570 0.80821 0.81107 1.19234 1.20321 1.18625 1.21308 1.04543 0.95008 0.97900 1.20494 0.99160 0.97526 0.92563 1.22776 0.96145 1.00257 0.91564 1.22226 0.92078 0.83024 0.98818 0.88517 1.22005 0.95485 1.00346 1.00613 1.21719 0.96074 1.01837 1.00857 1.87965 1.76848 1.25514 1.39286 0.92965 0.93023 0.92225 0.91502 0.90294 0.94960 0.88011 0.91499 0.95942 0.90045 0.89170 0.90860 0.86530 0.89452 0.90289 0.94689 0.91496 0.90090 0.93290 0.93149 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.81 37.16 0.36 -1.24 16 2 C -0.12 -1.46 5.65 -26.73 -0.15 -1.61 16 3 C 0.09 1.28 2.41 -26.68 -0.06 1.22 16 4 H 0.07 0.99 6.39 -51.93 -0.33 0.66 16 5 C 0.03 0.46 3.94 -3.71 -0.01 0.44 16 6 N -0.53 -8.45 4.32 -235.75 -1.02 -9.47 16 7 C 0.12 2.11 5.43 -4.97 -0.03 2.09 16 8 C -0.22 -4.55 4.16 -104.33 -0.43 -4.99 16 9 C -0.08 -1.80 7.84 -39.66 -0.31 -2.11 16 10 C -0.23 -5.46 9.80 -38.87 -0.38 -5.84 16 11 C 0.11 2.98 5.57 -106.83 -0.60 2.38 16 12 C -0.46 -12.14 9.05 -37.74 -0.34 -12.49 16 13 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 14 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 15 N -0.79 -20.27 10.95 55.55 0.61 -19.66 16 16 Si 0.91 18.49 29.60 -169.99 -5.03 13.46 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 20 C -0.17 -4.30 8.70 -38.87 -0.34 -4.64 16 21 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 22 C 0.02 0.28 5.04 -3.71 -0.02 0.27 16 23 C 0.10 1.19 3.30 -26.68 -0.09 1.10 16 24 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 25 C -0.15 -1.72 5.03 -26.73 -0.13 -1.85 16 26 C -0.15 -1.52 9.81 37.16 0.36 -1.16 16 27 O -0.38 -5.24 9.36 -35.23 -0.33 -5.56 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 1.91 5.93 -51.93 -0.31 1.60 16 35 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 36 H 0.02 0.39 8.02 -51.93 -0.42 -0.03 16 37 H 0.08 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 39 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 40 H 0.12 3.10 6.16 -52.49 -0.32 2.78 16 41 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.12 6.02 -51.93 -0.31 0.81 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.64 7.82 -51.93 -0.41 0.24 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -26.27 372.06 -11.20 -37.47 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -8.39 Total: 6.95 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: -2.64 Total: -28.79 kcal Atomic # 7 Polarization: -28.71 SS G_CDS: -0.41 Total: -29.12 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.33 Total: -5.56 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -26.27 -11.20 -37.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399182604.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.674 kcal (2) G-P(sol) polarization free energy of solvation -26.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds