Wall clock time and date at job start Tue Mar 31 2020 10:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46702 * 2 1 4 4 H 1.08992 * 109.51040 * 304.91233 * 3 2 1 5 5 C 1.53106 * 109.50461 * 184.77936 * 3 2 1 6 6 N 1.47012 * 109.25818 * 183.21798 * 5 3 2 7 7 C 1.46904 * 110.99715 * 182.39528 * 6 5 3 8 8 C 1.50697 * 109.46995 * 46.36736 * 7 6 5 9 9 C 1.38632 * 119.74791 * 269.72496 * 8 7 6 10 10 C 1.37623 * 120.24681 * 179.72514 * 9 8 7 11 11 C 1.40718 * 119.74543 * 0.52882 * 10 9 8 12 12 C 1.41389 * 120.24269 * 179.72790 * 11 10 9 13 13 H 1.08000 * 120.00021 * 24.39812 * 12 11 10 14 14 C 1.39950 * 119.99941 * 204.39646 * 12 11 10 15 15 N 1.30826 * 119.99417 * 17.85250 * 14 12 11 16 16 Si 1.86794 * 120.00329 * 197.85059 * 14 12 11 17 17 H 1.48495 * 109.47142 * 89.99636 * 16 14 12 18 18 H 1.48498 * 109.47280 * 210.00361 * 16 14 12 19 19 H 1.48507 * 109.46977 * 330.00136 * 16 14 12 20 20 C 1.40713 * 119.51128 * 359.74152 * 11 10 9 21 21 C 1.37620 * 119.74240 * 0.02562 * 20 11 10 22 22 C 1.47016 * 110.75390 * 58.61776 * 6 5 3 23 23 C 1.53095 * 109.25706 * 301.38395 * 22 6 5 24 24 H 1.09003 * 109.53958 * 176.80460 * 23 22 6 25 25 C 1.52999 * 109.50876 * 296.91189 * 23 22 6 26 26 C 1.52995 * 109.47103 * 184.78453 * 25 23 22 27 27 O 1.43014 * 109.50824 * 65.00378 * 3 2 1 28 28 H 1.09004 * 109.47230 * 59.99695 * 1 2 3 29 29 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47022 * 299.99906 * 1 2 3 31 31 H 1.09001 * 109.46745 * 120.00196 * 2 1 3 32 32 H 1.08998 * 109.47022 * 240.00094 * 2 1 3 33 33 H 1.08999 * 109.50729 * 303.15921 * 5 3 2 34 34 H 1.09003 * 109.50210 * 63.28639 * 5 3 2 35 35 H 1.09005 * 109.46534 * 166.36695 * 7 6 5 36 36 H 1.08991 * 109.46981 * 286.36382 * 7 6 5 37 37 H 1.08003 * 119.87581 * 359.97438 * 9 8 7 38 38 H 1.08001 * 120.12664 * 180.27625 * 10 9 8 39 39 H 0.97000 * 119.99352 * 180.02562 * 15 14 12 40 40 H 1.07998 * 120.13006 * 180.02562 * 20 11 10 41 41 H 1.08004 * 119.87519 * 179.97438 * 21 20 11 42 42 H 1.08991 * 109.50612 * 181.44676 * 22 6 5 43 43 H 1.09003 * 109.50027 * 61.32071 * 22 6 5 44 44 H 1.08996 * 109.46711 * 304.78539 * 25 23 22 45 45 H 1.08997 * 109.46852 * 64.78089 * 25 23 22 46 46 H 1.09004 * 109.47367 * 60.00333 * 26 25 23 47 47 H 1.09006 * 109.46963 * 179.97438 * 26 25 23 48 48 H 1.09001 * 109.47360 * 300.00133 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6069 1.9816 -0.8424 5 6 3.5662 1.4452 -0.1202 6 7 4.0564 2.8290 -0.0421 7 6 5.5148 2.8812 -0.2106 8 6 5.9160 2.0241 -1.3833 9 6 6.2232 0.6869 -1.1849 10 6 6.5853 -0.1066 -2.2494 11 6 6.6539 0.4470 -3.5413 12 6 7.0304 -0.3572 -4.6416 13 1 6.8878 -1.4270 -4.6024 14 6 7.5876 0.2331 -5.7816 15 7 8.0819 1.4427 -5.7165 16 14 7.6257 -0.7058 -7.3959 17 1 6.3845 -0.4253 -8.1612 18 1 8.8048 -0.2770 -8.1904 19 1 7.7183 -2.1620 -7.1195 20 6 6.3454 1.8069 -3.7300 21 6 5.9810 2.5803 -2.6516 22 6 3.6495 3.4551 1.2243 23 6 2.1224 3.4323 1.3311 24 1 1.8180 3.8439 2.2934 25 6 1.5187 4.2709 0.2027 26 6 0.0008 4.3460 0.3791 27 8 1.6620 2.0826 1.2218 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.9964 0.8602 0.6927 34 1 3.8567 1.0096 -1.0763 35 1 5.8230 3.9111 -0.3908 36 1 5.9983 2.5101 0.6930 37 1 6.1742 0.2653 -0.1918 38 1 6.8199 -1.1492 -2.0933 39 1 8.4678 1.8520 -6.5067 40 1 6.3944 2.2420 -4.7172 41 1 5.7441 3.6244 -2.7939 42 1 4.0007 4.4865 1.2497 43 1 4.0811 2.9022 2.0587 44 1 1.9382 5.2764 0.2331 45 1 1.7507 3.8093 -0.7570 46 1 -0.2311 4.8076 1.3389 47 1 -0.4292 4.9438 -0.4245 48 1 -0.4187 3.3404 0.3488 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399182604.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:29 Heat of formation + Delta-G solvation = -54.351514 kcal Electronic energy + Delta-G solvation = -25607.465499 eV Core-core repulsion = 22239.559634 eV Total energy + Delta-G solvation = -3367.905865 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.17645 -39.50940 -36.99841 -35.63293 -35.28385 -33.35128 -32.21631 -31.19200 -30.27492 -29.30836 -27.08251 -25.26108 -24.69607 -23.32509 -22.84558 -22.44254 -21.39672 -20.22722 -19.21288 -17.66824 -17.35316 -17.15951 -16.49031 -16.17118 -15.80535 -15.67983 -15.26134 -15.17480 -14.95861 -14.67536 -14.49807 -14.22651 -13.92747 -13.81505 -13.44166 -13.37239 -13.24819 -12.91624 -12.76045 -12.70665 -12.66604 -12.57848 -12.22929 -12.11664 -11.92832 -11.88829 -11.81408 -11.61067 -11.40066 -11.24209 -11.06459 -11.00254 -10.38634 -9.39164 -9.32316 -9.07028 -8.64193 -6.33334 0.93407 1.14356 1.37580 1.50435 1.50520 2.20291 2.64846 2.82490 3.06794 3.74870 3.83954 3.88085 4.01135 4.08263 4.18106 4.27518 4.29545 4.31601 4.41996 4.44871 4.52564 4.54283 4.61301 4.70500 4.73534 4.79426 4.82480 4.89454 4.93322 5.02262 5.05423 5.06787 5.12498 5.16230 5.18619 5.26215 5.37861 5.39288 5.43413 5.45851 5.54294 5.70421 5.91466 6.03061 6.10681 6.19868 6.27490 6.33758 6.38841 6.70904 6.94469 7.03851 8.32711 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.003535 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.628372 B = 7919.871995 C = 8371.465689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C 0.099 3.901 4 H 0.059 0.941 5 C 0.034 3.966 6 N -0.533 5.533 7 C 0.125 3.875 8 C -0.200 4.200 9 C -0.079 4.079 10 C -0.241 4.241 11 C 0.083 3.917 12 C -0.502 4.502 13 H 0.073 0.927 14 C 0.037 3.963 15 N -0.824 5.824 16 Si 0.980 3.020 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.190 4.190 21 C -0.083 4.083 22 C 0.021 3.979 23 C 0.094 3.906 24 H 0.122 0.878 25 C -0.143 4.143 26 C -0.143 4.143 27 O -0.381 6.381 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.288 0.712 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.035 0.965 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.232 4.058 10.751 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C 0.041 3.959 4 H 0.077 0.923 5 C -0.094 4.094 6 N -0.257 5.257 7 C -0.002 4.002 8 C -0.202 4.202 9 C -0.098 4.098 10 C -0.261 4.261 11 C 0.081 3.919 12 C -0.532 4.532 13 H 0.091 0.909 14 C -0.178 4.178 15 N -0.450 5.450 16 Si 0.801 3.199 17 H -0.187 1.187 18 H -0.192 1.192 19 H -0.183 1.183 20 C -0.210 4.210 21 C -0.102 4.102 22 C -0.107 4.107 23 C 0.036 3.964 24 H 0.140 0.860 25 C -0.180 4.180 26 C -0.200 4.200 27 O -0.300 6.300 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.053 0.947 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.416 4.426 10.398 16.788 hybrid contribution 1.154 -0.735 -0.505 1.459 sum -11.261 3.690 9.893 15.437 Atomic orbital electron populations 1.21634 0.93968 1.02108 1.01970 1.21525 0.97688 0.93582 1.02611 1.22126 0.92032 0.94261 0.87473 0.92289 1.22703 0.95846 0.89742 1.01116 1.62343 1.12250 1.17306 1.33848 1.20705 0.86515 0.98812 0.94164 1.19201 1.12206 0.94352 0.94393 1.20585 0.98746 0.93571 0.96898 1.21104 1.12771 0.99168 0.93047 1.17927 0.88628 0.92900 0.92458 1.19846 1.38038 0.95290 0.99994 0.90851 1.26731 0.91654 0.95801 1.03654 1.69882 1.27335 1.15802 1.32007 0.85231 0.78893 0.79334 0.76428 1.18700 1.19202 1.18260 1.21254 1.06388 0.95377 0.97976 1.20699 0.98696 0.98102 0.92717 1.22893 0.97019 1.00871 0.89888 1.22437 0.91258 0.82423 1.00247 0.86019 1.21953 0.96553 1.00471 0.99061 1.21676 0.94898 1.01526 1.01927 1.87967 1.76812 1.26426 1.38815 0.92908 0.91646 0.92300 0.91453 0.90814 0.95510 0.91013 0.90385 0.95033 0.87771 0.88850 0.90169 0.88388 0.87965 0.88493 0.94689 0.90445 0.92569 0.91794 0.92615 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.81 71.98 0.71 -2.15 16 2 C -0.12 -2.83 5.65 30.59 0.17 -2.66 16 3 C 0.10 2.71 2.41 30.63 0.07 2.78 16 4 H 0.06 1.72 6.39 -2.39 -0.02 1.71 16 5 C 0.03 1.09 3.94 86.32 0.34 1.43 16 6 N -0.53 -16.16 4.32 -899.78 -3.89 -20.05 16 7 C 0.12 4.15 5.43 85.56 0.46 4.61 16 8 C -0.20 -8.32 4.16 -19.68 -0.08 -8.40 16 9 C -0.08 -3.43 7.84 22.22 0.17 -3.26 16 10 C -0.24 -11.90 9.80 22.73 0.22 -11.68 16 11 C 0.08 4.53 5.57 -21.29 -0.12 4.41 16 12 C -0.50 -27.45 9.05 23.46 0.21 -27.24 16 13 H 0.07 3.89 7.91 -2.91 -0.02 3.86 16 14 C 0.04 1.86 5.14 85.26 0.44 2.30 16 15 N -0.82 -43.56 10.95 21.83 0.24 -43.32 16 16 Si 0.98 38.57 29.60 68.60 2.03 40.60 16 17 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 18 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 20 C -0.19 -10.10 8.70 22.73 0.20 -9.91 16 21 C -0.08 -3.86 9.67 22.22 0.21 -3.64 16 22 C 0.02 0.51 5.04 86.31 0.43 0.94 16 23 C 0.09 2.04 3.30 30.63 0.10 2.14 16 24 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 25 C -0.14 -3.02 5.03 30.59 0.15 -2.86 16 26 C -0.14 -2.60 9.81 71.98 0.71 -1.90 16 27 O -0.38 -9.80 9.36 -148.98 -1.39 -11.19 16 28 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.22 7.82 -2.39 -0.02 1.20 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 2.71 5.93 -2.39 -0.01 2.70 16 35 H 0.08 2.45 8.08 -2.38 -0.02 2.43 16 36 H 0.03 1.01 8.02 -2.39 -0.02 0.99 16 37 H 0.10 4.00 8.06 -2.91 -0.02 3.97 16 38 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 39 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 40 H 0.10 5.48 6.16 -2.91 -0.02 5.47 16 41 H 0.10 4.34 8.06 -2.91 -0.02 4.31 16 42 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 1.48 6.02 -2.39 -0.01 1.47 16 46 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.05 0.98 7.82 -2.39 -0.02 0.96 16 Total: -1.00 -58.00 372.06 2.30 -55.70 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.91 Total: 33.34 kcal Atomic # 6 Polarization: -59.49 SS G_CDS: 4.41 Total: -55.08 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -3.65 Total: -63.37 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -1.39 Total: -11.19 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -58.00 2.30 -55.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399182604.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.347 kcal (2) G-P(sol) polarization free energy of solvation -58.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds