Wall clock time and date at job start Tue Mar 31 2020 10:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47494 * 2 1 4 4 H 1.09004 * 109.50259 * 303.04221 * 3 2 1 5 5 C 1.53096 * 109.50826 * 63.17096 * 3 2 1 6 6 O 1.43013 * 109.25894 * 176.78599 * 5 3 2 7 7 C 1.43007 * 113.73940 * 301.32810 * 6 5 3 8 8 C 1.53001 * 109.50689 * 178.60292 * 7 6 5 9 9 C 1.52998 * 109.51094 * 298.69353 * 7 6 5 10 10 C 1.53106 * 109.25796 * 58.67372 * 7 6 5 11 11 N 1.47007 * 109.51136 * 182.95698 * 3 2 1 12 12 C 1.46902 * 111.00200 * 57.66971 * 11 3 2 13 13 C 1.50696 * 109.47407 * 175.64396 * 12 11 3 14 14 C 1.38632 * 119.75264 * 90.00170 * 13 12 11 15 15 C 1.37612 * 120.25129 * 179.97438 * 14 13 12 16 16 C 1.40710 * 119.74654 * 0.02562 * 15 14 13 17 17 C 1.41397 * 120.24747 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00109 * 209.08644 * 17 16 15 19 19 C 1.39943 * 120.00134 * 29.08230 * 17 16 15 20 20 N 1.30828 * 119.99752 * 10.55048 * 19 17 16 21 21 Si 1.86798 * 120.00462 * 190.55093 * 19 17 16 22 22 H 1.48501 * 109.47158 * 59.99637 * 21 19 17 23 23 H 1.48491 * 109.47220 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46837 * 299.99810 * 21 19 17 25 25 C 1.40714 * 119.51149 * 359.97438 * 16 15 14 26 26 C 1.37622 * 119.74303 * 359.97438 * 25 16 15 27 27 H 1.09002 * 109.46700 * 54.53300 * 1 2 3 28 28 H 1.09001 * 109.47296 * 174.53187 * 1 2 3 29 29 H 1.08994 * 109.47377 * 294.53528 * 1 2 3 30 30 H 1.09001 * 109.47713 * 239.99388 * 2 1 3 31 31 H 1.09006 * 109.47233 * 119.99767 * 2 1 3 32 32 H 1.09001 * 109.50874 * 296.72254 * 5 3 2 33 33 H 1.09004 * 109.50440 * 56.85037 * 5 3 2 34 34 H 1.09006 * 109.47071 * 60.00392 * 8 7 6 35 35 H 1.09004 * 109.47237 * 180.02562 * 8 7 6 36 36 H 1.08998 * 109.47458 * 300.00227 * 8 7 6 37 37 H 1.08996 * 109.46809 * 60.00053 * 9 7 6 38 38 H 1.09000 * 109.47349 * 179.97438 * 9 7 6 39 39 H 1.08998 * 109.46928 * 299.99647 * 9 7 6 40 40 H 1.08999 * 109.50764 * 183.21548 * 10 7 6 41 41 H 1.09007 * 109.50594 * 63.08412 * 10 7 6 42 42 H 1.09001 * 109.46823 * 55.64154 * 12 11 3 43 43 H 1.09001 * 109.47282 * 295.64975 * 12 11 3 44 44 H 1.08006 * 119.87111 * 0.27662 * 14 13 12 45 45 H 1.08003 * 120.13105 * 180.02562 * 15 14 13 46 46 H 0.96997 * 119.99817 * 180.02562 * 20 19 17 47 47 H 1.07996 * 120.13129 * 179.97438 * 25 16 15 48 48 H 1.08002 * 119.87368 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6332 1.9723 -0.8613 5 6 1.5965 2.1416 1.2877 6 8 2.1386 3.4646 1.3170 7 6 3.5666 3.5033 1.2497 8 6 4.0390 4.9586 1.2527 9 6 4.1550 2.7727 2.4584 10 6 4.0302 2.8180 -0.0385 11 7 3.5084 1.4440 -0.0715 12 6 3.9781 0.7312 -1.2670 13 6 5.4776 0.8450 -1.3631 14 6 6.2803 -0.1108 -0.7597 15 6 7.6507 -0.0171 -0.8415 16 6 8.2368 1.0543 -1.5404 17 6 9.6439 1.1612 -1.6306 18 1 10.1069 2.1327 -1.7224 19 6 10.4366 0.0083 -1.6009 20 7 9.8793 -1.1713 -1.6979 21 14 12.2903 0.1536 -1.4226 22 1 12.6125 0.8435 -0.1476 23 1 12.8951 -1.2026 -1.4188 24 1 12.8372 0.9357 -2.5605 25 6 7.4124 2.0187 -2.1489 26 6 6.0441 1.9043 -2.0551 27 1 -0.3633 0.5963 -0.8370 28 1 -0.3634 -1.0230 -0.0979 29 1 -0.3634 0.4267 0.9348 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.5081 2.1935 1.3174 33 1 1.9584 1.5808 2.1496 34 1 3.7054 5.4470 2.1682 35 1 5.1274 4.9874 1.2009 36 1 3.6208 5.4781 0.3905 37 1 3.8194 1.7357 2.4548 38 1 5.2434 2.8022 2.4063 39 1 3.8215 3.2595 3.3749 40 1 5.1196 2.7944 -0.0665 41 1 3.6552 3.3706 -0.9000 42 1 3.5227 1.1707 -2.1544 43 1 3.6972 -0.3197 -1.1972 44 1 5.8281 -0.9348 -0.2276 45 1 8.2742 -0.7631 -0.3710 46 1 10.4286 -1.9704 -1.6769 47 1 7.8516 2.8453 -2.6875 48 1 5.4093 2.6431 -2.5218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403887750.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:50 Heat of formation + Delta-G solvation = -48.756681 kcal Electronic energy + Delta-G solvation = -25872.994203 eV Core-core repulsion = 22505.330948 eV Total energy + Delta-G solvation = -3367.663255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.35194 -39.47431 -37.38231 -35.89270 -35.00768 -33.35035 -31.89976 -31.14182 -29.29627 -28.38027 -27.93591 -26.82882 -24.94434 -23.74162 -22.88198 -21.88071 -21.37948 -20.18314 -19.19287 -17.59274 -17.23597 -17.08388 -16.42904 -16.22814 -15.79686 -15.57094 -15.40603 -15.10487 -14.93708 -14.68118 -14.30439 -14.07695 -13.79447 -13.66801 -13.55365 -13.35190 -13.07916 -13.02706 -12.88028 -12.72048 -12.70861 -12.66000 -12.39977 -12.13923 -12.12135 -12.03416 -11.82791 -11.59763 -11.38775 -11.20774 -11.13578 -11.02247 -10.41388 -9.34977 -9.32286 -9.04002 -8.57305 -6.34622 0.94843 1.14486 1.38091 1.49210 1.51351 2.21934 2.67253 2.80024 3.02757 3.73822 3.76970 3.87699 3.95061 4.01675 4.09550 4.22802 4.29859 4.31942 4.45003 4.52067 4.53925 4.58332 4.63237 4.69012 4.76032 4.77515 4.81148 4.88115 4.91566 4.94626 5.01383 5.05456 5.09529 5.17414 5.20156 5.24924 5.29944 5.38396 5.39146 5.44405 5.46606 5.72257 5.92067 6.04117 6.12218 6.20085 6.27577 6.31552 6.40567 6.72485 6.96581 7.04624 8.38796 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020108 B = 0.003724 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.166177 B = 7517.727482 C = 8259.103580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.049 3.951 4 H 0.036 0.964 5 C 0.067 3.933 6 O -0.391 6.391 7 C 0.113 3.887 8 C -0.135 4.135 9 C -0.160 4.160 10 C 0.040 3.960 11 N -0.528 5.528 12 C 0.124 3.876 13 C -0.190 4.190 14 C -0.085 4.085 15 C -0.181 4.181 16 C 0.082 3.918 17 C -0.504 4.504 18 H 0.072 0.928 19 C 0.033 3.967 20 N -0.835 5.835 21 Si 0.982 3.018 22 H -0.261 1.261 23 H -0.268 1.268 24 H -0.261 1.261 25 C -0.235 4.235 26 C -0.084 4.084 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.025 0.975 42 H 0.027 0.973 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.285 0.715 47 H 0.094 0.906 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.620 4.021 5.777 16.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.060 4.060 4 H 0.054 0.946 5 C -0.009 4.009 6 O -0.310 6.310 7 C 0.074 3.926 8 C -0.193 4.193 9 C -0.217 4.217 10 C -0.089 4.089 11 N -0.253 5.253 12 C -0.002 4.002 13 C -0.192 4.192 14 C -0.104 4.104 15 C -0.200 4.200 16 C 0.079 3.921 17 C -0.534 4.534 18 H 0.091 0.909 19 C -0.180 4.180 20 N -0.462 5.462 21 Si 0.803 3.197 22 H -0.185 1.185 23 H -0.193 1.193 24 H -0.186 1.186 25 C -0.255 4.255 26 C -0.103 4.103 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.099 0.901 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.096 0.904 47 H 0.112 0.888 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.514 3.683 6.182 16.200 hybrid contribution 1.059 0.008 -1.055 1.495 sum -13.455 3.692 5.127 14.864 Atomic orbital electron populations 1.21772 0.93728 1.02562 1.02386 1.21534 0.96932 0.94024 1.02709 1.22438 0.87365 0.97896 0.98263 0.94570 1.22860 0.99274 0.82912 0.95884 1.87958 1.20332 1.28172 1.94555 1.21617 0.80646 0.96540 0.93787 1.21739 1.01491 0.92803 1.03251 1.22171 1.01004 1.01208 0.97310 1.22698 1.00981 0.88542 0.96629 1.62325 1.08386 1.14807 1.39754 1.20717 0.90855 0.98761 0.89879 1.19232 0.94244 0.98467 1.07235 1.20695 0.93175 0.97850 0.98662 1.21287 0.93969 1.01339 1.03426 1.17930 0.93772 0.91583 0.88770 1.19802 0.92152 0.94258 1.47223 0.90938 1.26700 1.05897 0.94054 0.91369 1.69853 1.39829 0.99475 1.37007 0.85256 0.75959 0.78567 0.79927 1.18505 1.19263 1.18567 1.21162 0.93811 1.03115 1.07387 1.20594 0.93961 0.97019 0.98739 0.92675 0.91548 0.91504 0.92063 0.91261 0.86608 0.92083 0.90554 0.90735 0.92044 0.91891 0.92534 0.91421 0.90586 0.95675 0.95514 0.90056 0.87947 0.88313 0.90399 0.88779 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.49 71.98 0.68 -1.54 16 2 C -0.11 -2.35 5.21 30.59 0.16 -2.19 16 3 C 0.05 1.20 2.07 44.93 0.09 1.29 16 4 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 5 C 0.07 1.52 5.52 72.01 0.40 1.91 16 6 O -0.39 -10.52 10.28 -148.98 -1.53 -12.05 16 7 C 0.11 3.10 1.11 -10.76 -0.01 3.09 16 8 C -0.14 -3.21 8.85 71.98 0.64 -2.57 16 9 C -0.16 -4.26 8.17 71.98 0.59 -3.68 16 10 C 0.04 1.25 3.54 86.32 0.31 1.56 16 11 N -0.53 -16.04 4.01 -874.54 -3.51 -19.54 16 12 C 0.12 4.15 4.70 85.56 0.40 4.55 16 13 C -0.19 -7.89 4.41 -19.68 -0.09 -7.98 16 14 C -0.09 -3.91 9.67 22.22 0.21 -3.70 16 15 C -0.18 -9.57 8.66 22.73 0.20 -9.37 16 16 C 0.08 4.45 5.55 -21.29 -0.12 4.33 16 17 C -0.50 -27.62 9.06 23.46 0.21 -27.41 16 18 H 0.07 3.83 7.87 -2.91 -0.02 3.81 16 19 C 0.03 1.70 5.26 85.26 0.45 2.15 16 20 N -0.83 -44.46 10.85 21.83 0.24 -44.23 16 21 Si 0.98 38.94 29.57 68.60 2.03 40.97 16 22 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 25 C -0.24 -11.57 9.80 22.73 0.22 -11.35 16 26 C -0.08 -3.64 7.77 22.22 0.17 -3.47 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.86 6.88 -2.39 -0.02 0.85 16 30 H 0.06 1.36 6.31 -2.39 -0.02 1.34 16 31 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.12 2.04 6.81 -2.39 -0.02 2.02 16 33 H 0.06 1.38 6.49 -2.39 -0.02 1.36 16 34 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.77 6.13 -2.39 -0.01 1.76 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 2.80 5.86 -2.39 -0.01 2.79 16 41 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.03 0.87 8.07 -2.39 -0.02 0.86 16 43 H 0.08 2.57 6.39 -2.39 -0.02 2.55 16 44 H 0.10 4.32 8.06 -2.91 -0.02 4.29 16 45 H 0.10 5.54 6.24 -2.91 -0.02 5.52 16 46 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 47 H 0.09 4.43 8.06 -2.91 -0.02 4.40 16 48 H 0.10 3.99 8.03 -2.91 -0.02 3.97 16 Total: -1.00 -58.66 365.79 2.66 -55.99 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.92 Total: 33.24 kcal Atomic # 6 Polarization: -58.90 SS G_CDS: 4.52 Total: -54.38 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -3.27 Total: -63.77 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -1.53 Total: -12.05 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -58.66 2.66 -55.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403887750.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.235 kcal (2) G-P(sol) polarization free energy of solvation -58.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds