Wall clock time and date at job start Tue Mar 31 2020 10:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46500 * 2 1 4 4 H 1.09000 * 109.54409 * 57.67593 * 3 2 1 5 5 C 1.53098 * 109.50868 * 297.56086 * 3 2 1 6 6 O 1.43011 * 109.25842 * 183.21757 * 5 3 2 7 7 C 1.43019 * 113.73861 * 58.67482 * 6 5 3 8 8 H 1.09001 * 109.50430 * 61.26108 * 7 6 5 9 9 C 1.52999 * 109.50564 * 181.34670 * 7 6 5 10 10 C 1.52997 * 109.47471 * 294.99872 * 9 7 6 11 11 C 1.53096 * 109.25717 * 301.32969 * 7 6 5 12 12 N 1.47019 * 109.25889 * 56.84832 * 11 7 6 13 13 C 1.46895 * 110.99915 * 177.60712 * 12 11 7 14 14 C 1.50702 * 109.47245 * 293.96982 * 13 12 11 15 15 C 1.38631 * 119.74901 * 89.99790 * 14 13 12 16 16 C 1.37623 * 120.24784 * 180.02562 * 15 14 13 17 17 C 1.40714 * 119.74464 * 359.97438 * 16 15 14 18 18 C 1.41393 * 120.24379 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00321 * 333.52926 * 18 17 16 20 20 C 1.39940 * 119.99813 * 153.53330 * 18 17 16 21 21 N 1.30820 * 120.00216 * 347.03838 * 20 18 17 22 22 Si 1.86799 * 120.00046 * 167.04492 * 20 18 17 23 23 H 1.48507 * 109.47343 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47281 * 299.99988 * 22 20 18 25 25 H 1.48508 * 109.47283 * 59.99580 * 22 20 18 26 26 C 1.40715 * 119.51298 * 0.27847 * 17 16 15 27 27 C 1.37623 * 119.74152 * 359.44553 * 26 17 16 28 28 H 1.09003 * 109.47099 * 306.69488 * 1 2 3 29 29 H 1.08999 * 109.47537 * 66.70073 * 1 2 3 30 30 H 1.09007 * 109.47130 * 186.69976 * 1 2 3 31 31 H 1.08997 * 109.46853 * 240.00226 * 2 1 3 32 32 H 1.09001 * 109.47551 * 119.99897 * 2 1 3 33 33 H 1.08994 * 109.51148 * 303.16027 * 5 3 2 34 34 H 1.09001 * 109.49940 * 63.28505 * 5 3 2 35 35 H 1.09000 * 109.47044 * 55.00432 * 9 7 6 36 36 H 1.09003 * 109.46697 * 175.00261 * 9 7 6 37 37 H 1.08997 * 109.46949 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.47444 * 300.00315 * 10 9 7 39 39 H 1.09003 * 109.46842 * 60.00478 * 10 9 7 40 40 H 1.08998 * 109.50389 * 296.91166 * 11 7 6 41 41 H 1.09001 * 109.50277 * 176.77966 * 11 7 6 42 42 H 1.09000 * 109.47005 * 173.97083 * 13 12 11 43 43 H 1.09007 * 109.47162 * 53.96981 * 13 12 11 44 44 H 1.08002 * 119.87710 * 0.02562 * 15 14 13 45 45 H 1.08003 * 120.12647 * 180.02562 * 16 15 14 46 46 H 0.97002 * 120.00211 * 179.97438 * 21 20 18 47 47 H 1.07995 * 120.12888 * 179.72134 * 26 17 16 48 48 H 1.07999 * 119.87481 * 180.27764 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6435 1.9694 0.8680 5 6 1.5807 2.1471 -1.2793 6 8 2.1223 3.4704 -1.3095 7 6 3.5511 3.5089 -1.2594 8 1 3.9598 2.9914 -2.1273 9 6 4.0234 4.9642 -1.2631 10 6 3.6477 5.6190 -2.5938 11 6 4.0303 2.8181 0.0201 12 7 3.5091 1.4438 0.0536 13 6 3.9932 0.7260 1.2402 14 6 5.4856 0.5414 1.1415 15 6 6.3340 1.5060 1.6628 16 6 7.6985 1.3482 1.5778 17 6 8.2316 0.2021 0.9595 18 6 9.6318 0.0289 0.8670 19 1 10.2832 0.8904 0.8586 20 6 10.1737 -1.2587 0.7860 21 7 9.4270 -2.3004 1.0483 22 14 11.9635 -1.4903 0.3037 23 1 12.2895 -2.9391 0.2917 24 1 12.1894 -0.9203 -1.0488 25 1 12.8346 -0.7954 1.2854 26 6 7.3609 -0.7679 0.4293 27 6 5.9997 -0.5919 0.5306 28 1 -0.3633 0.6141 0.8240 29 1 -0.3634 0.4065 -0.9438 30 1 -0.3634 -1.0207 0.1199 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9320 1.5901 -2.1478 34 1 0.4920 2.1990 -1.2954 35 1 3.5455 5.5033 -0.4451 36 1 5.1055 4.9953 -1.1355 37 1 3.9845 6.6556 -2.5965 38 1 4.1256 5.0799 -3.4118 39 1 2.5656 5.5879 -2.7213 40 1 3.6657 3.3669 0.8884 41 1 5.1200 2.7945 0.0347 42 1 3.5095 -0.2492 1.2974 43 1 3.7567 1.3019 2.1349 44 1 5.9226 2.3847 2.1373 45 1 8.3576 2.1007 1.9849 46 1 9.8025 -3.1930 0.9918 47 1 7.7593 -1.6491 -0.0514 48 1 5.3295 -1.3371 0.1283 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403960792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:47 Heat of formation + Delta-G solvation = -41.090589 kcal Electronic energy + Delta-G solvation = -25382.164017 eV Core-core repulsion = 22014.833189 eV Total energy + Delta-G solvation = -3367.330828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -39.89644 -37.67023 -36.14294 -34.52242 -33.55007 -32.80119 -30.40037 -29.27043 -28.75050 -27.72459 -25.48889 -24.80832 -23.20551 -21.98344 -21.14253 -20.76755 -20.05087 -19.55019 -17.28263 -16.64256 -16.19204 -15.36721 -15.18353 -14.85396 -14.55602 -14.28424 -14.07186 -13.68135 -13.54419 -13.43496 -13.31737 -13.10519 -12.82532 -12.41290 -12.24529 -11.94545 -11.79599 -11.60471 -11.54400 -11.26962 -11.09931 -11.00691 -10.99966 -10.94612 -10.85124 -10.67429 -10.40322 -10.33029 -10.13371 -9.64789 -9.34077 -9.28647 -9.16743 -8.00318 -7.43288 -7.25594 -6.71244 -4.35563 2.74879 3.06145 3.07700 3.09567 3.17708 3.83843 3.94018 4.11258 4.67392 4.79644 4.87231 4.95889 5.09478 5.19753 5.20895 5.34848 5.41035 5.43139 5.52406 5.58671 5.67714 5.72609 5.77599 5.81299 5.88215 5.93055 5.96446 5.98591 5.99396 6.10428 6.17840 6.20600 6.27839 6.30255 6.34744 6.39233 6.45972 6.95911 7.08321 7.24373 7.29992 7.33213 7.41166 7.43761 7.62775 7.87708 8.06751 8.14864 8.31483 8.66138 8.91127 8.98684 10.22371 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.003632 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.035154 B = 7707.534206 C = 8830.793254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.047 3.953 4 H 0.042 0.958 5 C 0.072 3.928 6 O -0.385 6.385 7 C 0.093 3.907 8 H 0.066 0.934 9 C -0.116 4.116 10 C -0.147 4.147 11 C 0.027 3.973 12 N -0.525 5.525 13 C 0.116 3.884 14 C -0.204 4.204 15 C -0.088 4.088 16 C -0.224 4.224 17 C 0.112 3.888 18 C -0.464 4.464 19 H 0.075 0.925 20 C 0.075 3.925 21 N -0.799 5.799 22 Si 0.909 3.091 23 H -0.279 1.279 24 H -0.264 1.264 25 H -0.266 1.266 26 C -0.162 4.162 27 C -0.081 4.081 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.032 0.968 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.022 0.978 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.280 0.720 47 H 0.119 0.881 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.961 6.512 -3.889 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.062 4.062 4 H 0.060 0.940 5 C -0.005 4.005 6 O -0.304 6.304 7 C 0.035 3.965 8 H 0.084 0.916 9 C -0.153 4.153 10 C -0.204 4.204 11 C -0.101 4.101 12 N -0.250 5.250 13 C -0.010 4.010 14 C -0.205 4.205 15 C -0.106 4.106 16 C -0.244 4.244 17 C 0.109 3.891 18 C -0.494 4.494 19 H 0.093 0.907 20 C -0.142 4.142 21 N -0.425 5.425 22 Si 0.734 3.266 23 H -0.204 1.204 24 H -0.189 1.189 25 H -0.191 1.191 26 C -0.182 4.182 27 C -0.100 4.100 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.040 0.960 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.091 0.909 47 H 0.137 0.863 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.889 6.166 -4.285 14.917 hybrid contribution 0.732 -0.093 0.715 1.027 sum -12.157 6.072 -3.570 14.051 Atomic orbital electron populations 1.21808 0.95778 1.01708 1.01641 1.21599 0.95156 0.95605 1.03372 1.22323 0.89380 0.96539 0.97910 0.94036 1.22679 0.98024 0.83364 0.96483 1.87917 1.20645 1.27046 1.94830 1.22243 0.80794 0.96012 0.97414 0.91630 1.21517 1.01214 0.93812 0.98805 1.21690 1.02009 0.99845 0.96861 1.22799 1.02385 0.88391 0.96527 1.62349 1.06082 1.14578 1.41988 1.20844 0.94171 0.97235 0.88768 1.18847 0.91879 0.98377 1.11431 1.20350 0.93711 0.96708 0.99872 1.20958 0.93644 1.01525 1.08284 1.17619 0.93373 0.90488 0.87584 1.19562 0.92308 0.92667 1.44837 0.90662 1.25882 1.00189 0.95651 0.92489 1.69793 1.37788 0.99683 1.35241 0.86358 0.82227 0.77822 0.80219 1.20359 1.18884 1.19089 1.21369 0.91545 1.01639 1.03624 1.20489 0.95123 0.95791 0.98577 0.92855 0.92668 0.92535 0.90897 0.91156 0.92570 0.88979 0.91461 0.90294 0.92951 0.92849 0.92187 0.94979 0.88349 0.90939 0.96014 0.90010 0.89194 0.90932 0.86294 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.43 37.16 0.35 -1.05 16 2 C -0.12 -1.41 5.23 -26.73 -0.14 -1.55 16 3 C 0.05 0.64 2.08 -67.60 -0.14 0.50 16 4 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 5 C 0.07 0.90 5.91 37.21 0.22 1.12 16 6 O -0.39 -5.47 10.01 -35.23 -0.35 -5.82 16 7 C 0.09 1.32 2.80 -26.68 -0.07 1.24 16 8 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 9 C -0.12 -1.39 5.65 -26.73 -0.15 -1.54 16 10 C -0.15 -1.56 9.81 37.16 0.36 -1.20 16 11 C 0.03 0.43 4.54 -3.71 -0.02 0.41 16 12 N -0.53 -8.51 4.53 -227.77 -1.03 -9.55 16 13 C 0.12 2.04 4.89 -4.98 -0.02 2.02 16 14 C -0.20 -4.34 4.91 -104.33 -0.51 -4.85 16 15 C -0.09 -1.92 7.88 -39.66 -0.31 -2.23 16 16 C -0.22 -5.45 9.80 -38.87 -0.38 -5.83 16 17 C 0.11 2.97 5.57 -106.83 -0.59 2.37 16 18 C -0.46 -12.31 9.07 -37.74 -0.34 -12.65 16 19 H 0.08 1.92 7.88 -52.48 -0.41 1.51 16 20 C 0.07 1.88 5.23 -17.35 -0.09 1.79 16 21 N -0.80 -20.69 10.82 55.55 0.60 -20.09 16 22 Si 0.91 18.73 29.58 -169.99 -5.03 13.70 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 C -0.16 -4.20 8.68 -38.87 -0.34 -4.53 16 27 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.46 6.93 -51.93 -0.36 0.10 16 30 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.88 6.05 -51.93 -0.31 0.56 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.96 6.83 -51.93 -0.35 0.61 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.66 7.82 -51.93 -0.41 0.26 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 1.74 6.00 -51.93 -0.31 1.43 16 42 H 0.07 1.22 5.67 -51.93 -0.29 0.92 16 43 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 44 H 0.08 1.61 8.00 -52.49 -0.42 1.19 16 45 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 46 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 47 H 0.12 3.20 6.15 -52.49 -0.32 2.88 16 48 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -27.04 370.74 -11.04 -38.08 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.25 Total: 6.34 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: -2.57 Total: -28.26 kcal Atomic # 7 Polarization: -29.20 SS G_CDS: -0.43 Total: -29.63 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.35 Total: -5.82 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.04 -11.04 -38.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403960792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.012 kcal (2) G-P(sol) polarization free energy of solvation -27.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds