Wall clock time and date at job start Tue Mar 31 2020 10:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46500 * 2 1 4 4 H 1.09000 * 109.54409 * 57.67593 * 3 2 1 5 5 C 1.53098 * 109.50868 * 297.56086 * 3 2 1 6 6 O 1.43011 * 109.25842 * 183.21757 * 5 3 2 7 7 C 1.43019 * 113.73861 * 58.67482 * 6 5 3 8 8 H 1.09001 * 109.50430 * 61.26108 * 7 6 5 9 9 C 1.52999 * 109.50564 * 181.34670 * 7 6 5 10 10 C 1.52997 * 109.47471 * 294.99872 * 9 7 6 11 11 C 1.53096 * 109.25717 * 301.32969 * 7 6 5 12 12 N 1.47019 * 109.25889 * 56.84832 * 11 7 6 13 13 C 1.46895 * 110.99915 * 177.60712 * 12 11 7 14 14 C 1.50702 * 109.47245 * 293.96982 * 13 12 11 15 15 C 1.38631 * 119.74901 * 89.99790 * 14 13 12 16 16 C 1.37623 * 120.24784 * 180.02562 * 15 14 13 17 17 C 1.40714 * 119.74464 * 359.97438 * 16 15 14 18 18 C 1.41393 * 120.24379 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00321 * 333.52926 * 18 17 16 20 20 C 1.39940 * 119.99813 * 153.53330 * 18 17 16 21 21 N 1.30820 * 120.00216 * 347.03838 * 20 18 17 22 22 Si 1.86799 * 120.00046 * 167.04492 * 20 18 17 23 23 H 1.48507 * 109.47343 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47281 * 299.99988 * 22 20 18 25 25 H 1.48508 * 109.47283 * 59.99580 * 22 20 18 26 26 C 1.40715 * 119.51298 * 0.27847 * 17 16 15 27 27 C 1.37623 * 119.74152 * 359.44553 * 26 17 16 28 28 H 1.09003 * 109.47099 * 306.69488 * 1 2 3 29 29 H 1.08999 * 109.47537 * 66.70073 * 1 2 3 30 30 H 1.09007 * 109.47130 * 186.69976 * 1 2 3 31 31 H 1.08997 * 109.46853 * 240.00226 * 2 1 3 32 32 H 1.09001 * 109.47551 * 119.99897 * 2 1 3 33 33 H 1.08994 * 109.51148 * 303.16027 * 5 3 2 34 34 H 1.09001 * 109.49940 * 63.28505 * 5 3 2 35 35 H 1.09000 * 109.47044 * 55.00432 * 9 7 6 36 36 H 1.09003 * 109.46697 * 175.00261 * 9 7 6 37 37 H 1.08997 * 109.46949 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.47444 * 300.00315 * 10 9 7 39 39 H 1.09003 * 109.46842 * 60.00478 * 10 9 7 40 40 H 1.08998 * 109.50389 * 296.91166 * 11 7 6 41 41 H 1.09001 * 109.50277 * 176.77966 * 11 7 6 42 42 H 1.09000 * 109.47005 * 173.97083 * 13 12 11 43 43 H 1.09007 * 109.47162 * 53.96981 * 13 12 11 44 44 H 1.08002 * 119.87710 * 0.02562 * 15 14 13 45 45 H 1.08003 * 120.12647 * 180.02562 * 16 15 14 46 46 H 0.97002 * 120.00211 * 179.97438 * 21 20 18 47 47 H 1.07995 * 120.12888 * 179.72134 * 26 17 16 48 48 H 1.07999 * 119.87481 * 180.27764 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6435 1.9694 0.8680 5 6 1.5807 2.1471 -1.2793 6 8 2.1223 3.4704 -1.3095 7 6 3.5511 3.5089 -1.2594 8 1 3.9598 2.9914 -2.1273 9 6 4.0234 4.9642 -1.2631 10 6 3.6477 5.6190 -2.5938 11 6 4.0303 2.8181 0.0201 12 7 3.5091 1.4438 0.0536 13 6 3.9932 0.7260 1.2402 14 6 5.4856 0.5414 1.1415 15 6 6.3340 1.5060 1.6628 16 6 7.6985 1.3482 1.5778 17 6 8.2316 0.2021 0.9595 18 6 9.6318 0.0289 0.8670 19 1 10.2832 0.8904 0.8586 20 6 10.1737 -1.2587 0.7860 21 7 9.4270 -2.3004 1.0483 22 14 11.9635 -1.4903 0.3037 23 1 12.2895 -2.9391 0.2917 24 1 12.1894 -0.9203 -1.0488 25 1 12.8346 -0.7954 1.2854 26 6 7.3609 -0.7679 0.4293 27 6 5.9997 -0.5919 0.5306 28 1 -0.3633 0.6141 0.8240 29 1 -0.3634 0.4065 -0.9438 30 1 -0.3634 -1.0207 0.1199 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9320 1.5901 -2.1478 34 1 0.4920 2.1990 -1.2954 35 1 3.5455 5.5033 -0.4451 36 1 5.1055 4.9953 -1.1355 37 1 3.9845 6.6556 -2.5965 38 1 4.1256 5.0799 -3.4118 39 1 2.5656 5.5879 -2.7213 40 1 3.6657 3.3669 0.8884 41 1 5.1200 2.7945 0.0347 42 1 3.5095 -0.2492 1.2974 43 1 3.7567 1.3019 2.1349 44 1 5.9226 2.3847 2.1373 45 1 8.3576 2.1007 1.9849 46 1 9.8025 -3.1930 0.9918 47 1 7.7593 -1.6491 -0.0514 48 1 5.3295 -1.3371 0.1283 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403960792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:46 Heat of formation + Delta-G solvation = -54.392181 kcal Electronic energy + Delta-G solvation = -25382.740817 eV Core-core repulsion = 22014.833189 eV Total energy + Delta-G solvation = -3367.907629 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.08589 -39.41088 -37.37063 -35.88481 -35.07904 -33.86307 -32.10226 -31.12639 -29.80060 -29.17123 -27.04267 -25.78881 -24.68384 -23.09766 -22.84268 -22.03628 -21.55967 -20.87121 -19.20236 -17.73055 -17.34074 -17.16965 -16.53397 -16.12963 -15.81953 -15.52433 -15.46467 -15.16566 -15.02447 -14.67193 -14.40964 -14.34024 -13.98240 -13.79918 -13.71947 -13.39240 -13.26305 -12.95126 -12.73031 -12.71392 -12.63789 -12.39602 -12.21494 -12.12934 -11.91720 -11.88070 -11.80240 -11.63178 -11.40973 -11.24675 -11.17428 -11.02247 -10.45579 -9.34711 -9.32749 -9.09297 -8.58669 -6.33590 0.95668 1.15573 1.37879 1.49014 1.52166 2.21522 2.65637 2.79750 3.00708 3.71207 3.77613 3.84773 3.95373 4.08400 4.11067 4.24521 4.26949 4.32620 4.39386 4.43860 4.53530 4.55273 4.57888 4.64713 4.67190 4.71393 4.80730 4.84118 4.88238 4.98297 5.04102 5.07028 5.10942 5.16726 5.20736 5.23778 5.28205 5.39641 5.41733 5.43479 5.47722 5.72331 5.93330 6.02542 6.12381 6.16251 6.26452 6.30348 6.40722 6.72856 6.96410 7.05529 8.37101 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.003632 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.035154 B = 7707.534206 C = 8830.793254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.050 3.950 4 H 0.041 0.959 5 C 0.070 3.930 6 O -0.390 6.390 7 C 0.098 3.902 8 H 0.053 0.947 9 C -0.114 4.114 10 C -0.142 4.142 11 C 0.030 3.970 12 N -0.537 5.537 13 C 0.122 3.878 14 C -0.190 4.190 15 C -0.084 4.084 16 C -0.239 4.239 17 C 0.080 3.920 18 C -0.503 4.503 19 H 0.073 0.927 20 C 0.034 3.966 21 N -0.831 5.831 22 Si 0.982 3.018 23 H -0.268 1.268 24 H -0.261 1.261 25 H -0.260 1.260 26 C -0.185 4.185 27 C -0.086 4.086 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.029 0.971 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.286 0.714 47 H 0.100 0.900 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.522 7.230 -4.173 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.059 4.059 4 H 0.059 0.941 5 C -0.006 4.006 6 O -0.309 6.309 7 C 0.040 3.960 8 H 0.071 0.929 9 C -0.152 4.152 10 C -0.200 4.200 11 C -0.098 4.098 12 N -0.262 5.262 13 C -0.004 4.004 14 C -0.192 4.192 15 C -0.103 4.103 16 C -0.258 4.258 17 C 0.078 3.922 18 C -0.533 4.533 19 H 0.091 0.909 20 C -0.180 4.180 21 N -0.458 5.458 22 Si 0.803 3.197 23 H -0.192 1.192 24 H -0.185 1.185 25 H -0.185 1.185 26 C -0.205 4.205 27 C -0.105 4.105 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.047 0.953 44 H 0.125 0.875 45 H 0.113 0.887 46 H 0.097 0.903 47 H 0.118 0.882 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.475 6.893 -4.568 16.670 hybrid contribution 1.044 -0.272 0.822 1.357 sum -13.431 6.621 -3.745 15.435 Atomic orbital electron populations 1.21771 0.93535 1.02587 1.02489 1.21575 0.97074 0.94166 1.02605 1.22414 0.87281 0.97809 0.98378 0.94107 1.22839 0.99479 0.82589 0.95740 1.87919 1.20346 1.27959 1.94724 1.22194 0.80970 0.96987 0.95869 0.92853 1.21529 1.01272 0.92581 0.99815 1.21653 1.01763 1.00640 0.95895 1.22750 1.01030 0.88469 0.97596 1.62269 1.08186 1.14741 1.40998 1.20740 0.91489 0.98383 0.89785 1.19240 0.94181 0.96935 1.08805 1.20607 0.92866 0.97562 0.99254 1.21150 0.94981 1.01205 1.08498 1.17945 0.93965 0.91638 0.88700 1.19816 0.92726 0.93567 1.47223 0.90900 1.26720 1.04719 0.94815 0.91754 1.69858 1.39814 1.00238 1.35896 0.85258 0.76455 0.78204 0.79799 1.19186 1.18548 1.18472 1.21313 0.92796 1.01426 1.04949 1.20698 0.94346 0.96855 0.98571 0.92393 0.91498 0.91629 0.91618 0.91945 0.92866 0.86292 0.91082 0.90191 0.91358 0.92980 0.92510 0.94821 0.90565 0.89856 0.95318 0.87457 0.88742 0.90324 0.88197 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.43 71.98 0.68 -1.59 16 2 C -0.12 -2.49 5.23 30.60 0.16 -2.33 16 3 C 0.05 1.23 2.08 44.93 0.09 1.32 16 4 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 5 C 0.07 1.60 5.91 72.01 0.43 2.02 16 6 O -0.39 -10.28 10.01 -148.98 -1.49 -11.77 16 7 C 0.10 2.65 2.80 30.63 0.09 2.73 16 8 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 9 C -0.11 -2.59 5.65 30.59 0.17 -2.41 16 10 C -0.14 -2.79 9.81 71.98 0.71 -2.08 16 11 C 0.03 0.91 4.54 86.31 0.39 1.30 16 12 N -0.54 -16.65 4.53 -874.52 -3.96 -20.61 16 13 C 0.12 4.13 4.89 85.56 0.42 4.55 16 14 C -0.19 -8.00 4.91 -19.67 -0.10 -8.10 16 15 C -0.08 -3.66 7.88 22.22 0.18 -3.49 16 16 C -0.24 -11.85 9.80 22.73 0.22 -11.63 16 17 C 0.08 4.39 5.57 -21.29 -0.12 4.27 16 18 C -0.50 -27.76 9.07 23.46 0.21 -27.55 16 19 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16 20 C 0.03 1.73 5.23 85.26 0.45 2.18 16 21 N -0.83 -44.38 10.82 21.82 0.24 -44.15 16 22 Si 0.98 38.98 29.58 68.60 2.03 41.01 16 23 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 25 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 26 C -0.19 -9.94 8.68 22.73 0.20 -9.74 16 27 C -0.09 -4.02 9.67 22.22 0.21 -3.80 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.89 6.93 -2.39 -0.02 0.87 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.43 6.05 -2.39 -0.01 1.42 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.12 2.07 6.83 -2.39 -0.02 2.06 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.15 7.82 -2.39 -0.02 1.13 16 40 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 2.66 6.00 -2.39 -0.01 2.65 16 42 H 0.08 2.65 5.67 -2.39 -0.01 2.63 16 43 H 0.03 0.94 8.06 -2.38 -0.02 0.92 16 44 H 0.11 4.07 8.00 -2.91 -0.02 4.05 16 45 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 46 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 47 H 0.10 5.66 6.15 -2.91 -0.02 5.64 16 48 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -59.52 370.74 2.11 -57.41 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.91 Total: 32.46 kcal Atomic # 6 Polarization: -58.74 SS G_CDS: 4.39 Total: -54.36 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -3.73 Total: -64.75 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -1.49 Total: -11.77 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -59.52 2.11 -57.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403960792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.014 kcal (2) G-P(sol) polarization free energy of solvation -59.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds