Wall clock time and date at job start Tue Mar 31 2020 11:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47231 * 2 1 4 4 H 1.08994 * 109.47221 * 305.63861 * 3 2 1 5 5 C 1.53001 * 109.46864 * 185.63802 * 3 2 1 6 6 C 1.50694 * 109.47259 * 65.00399 * 5 3 2 7 7 C 1.38260 * 119.99948 * 264.72539 * 6 5 3 8 8 C 1.38214 * 120.00094 * 179.74366 * 7 6 5 9 9 C 1.38254 * 119.99563 * 0.55007 * 8 7 6 10 10 C 1.38204 * 120.00478 * 359.69854 * 9 8 7 11 11 C 1.38213 * 120.00327 * 84.99565 * 6 5 3 12 12 C 1.50697 * 119.99747 * 359.97438 * 11 6 5 13 13 C 1.50704 * 109.46868 * 65.64029 * 3 2 1 14 14 O 1.21282 * 120.00101 * 94.63898 * 13 3 2 15 15 N 1.34777 * 119.99625 * 274.63549 * 13 3 2 16 16 C 1.46509 * 119.99674 * 174.82468 * 15 13 3 17 17 H 1.09002 * 109.46546 * 34.72665 * 16 15 13 18 18 C 1.50696 * 109.46817 * 154.72635 * 16 15 13 19 19 H 1.07996 * 120.00429 * 359.97438 * 18 16 15 20 20 C 1.37878 * 119.99661 * 180.02562 * 18 16 15 21 21 N 1.31516 * 120.00270 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 119.99890 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46962 * 60.00176 * 22 20 18 24 24 H 1.48497 * 109.47012 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47128 * 299.99944 * 22 20 18 26 26 C 1.52994 * 109.47118 * 274.72963 * 16 15 13 27 27 C 1.52994 * 109.47486 * 64.99862 * 26 16 15 28 28 H 1.08996 * 109.47091 * 174.90923 * 1 2 3 29 29 H 1.09004 * 109.46715 * 294.91259 * 1 2 3 30 30 H 1.09000 * 109.46905 * 54.91254 * 1 2 3 31 31 H 1.09001 * 109.47040 * 240.00146 * 2 1 3 32 32 H 1.09007 * 109.46800 * 119.99844 * 2 1 3 33 33 H 1.09007 * 109.46624 * 185.00215 * 5 3 2 34 34 H 1.08995 * 109.47117 * 304.99512 * 5 3 2 35 35 H 1.08007 * 119.99773 * 359.97438 * 7 6 5 36 36 H 1.07998 * 120.00046 * 180.27417 * 8 7 6 37 37 H 1.08004 * 119.99721 * 179.72894 * 9 8 7 38 38 H 1.08005 * 120.00566 * 179.97438 * 10 9 8 39 39 H 1.09007 * 109.46797 * 90.00427 * 12 11 6 40 40 H 1.09000 * 109.47158 * 209.99660 * 12 11 6 41 41 H 1.09000 * 109.47505 * 330.00224 * 12 11 6 42 42 H 0.96995 * 120.00593 * 354.55692 * 15 13 3 43 43 H 0.97000 * 119.99881 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.47192 * 185.00343 * 26 16 15 45 45 H 1.09004 * 109.46890 * 304.99756 * 26 16 15 46 46 H 1.09004 * 109.47143 * 60.00049 * 27 26 16 47 47 H 1.09006 * 109.47481 * 179.97438 * 27 26 16 48 48 H 1.09001 * 109.47005 * 299.99960 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9847 -0.8351 5 6 3.5635 1.4447 -0.1417 6 6 3.9434 0.8876 -1.4894 7 6 4.2691 -0.4499 -1.6176 8 6 4.6125 -0.9621 -2.8545 9 6 4.6413 -0.1344 -3.9616 10 6 4.3207 1.2037 -3.8325 11 6 3.9718 1.7149 -2.5962 12 6 3.6222 3.1740 -2.4554 13 6 1.6549 2.1114 1.2944 14 8 2.4368 2.1343 2.2212 15 7 0.4417 2.6843 1.4219 16 6 0.0234 3.2342 2.7138 17 1 0.8879 3.6574 3.2255 18 6 -1.0061 4.3120 2.4913 19 1 -1.3174 4.5626 1.4880 20 6 -1.5498 4.9789 3.5687 21 7 -1.1696 4.6747 4.7904 22 14 -2.8254 6.3154 3.2929 23 1 -4.0034 5.7391 2.5960 24 1 -3.2494 6.8727 4.6024 25 1 -2.2380 7.3963 2.4612 26 6 -0.5813 2.1202 3.5706 27 6 0.4982 1.0875 3.9006 28 1 -0.3633 -1.0236 -0.0912 29 1 -0.3633 0.4329 0.9321 30 1 -0.3633 0.5907 -0.8409 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.9351 2.4656 -0.0527 34 1 4.0023 0.8287 0.6431 35 1 4.2516 -1.0954 -0.7518 36 1 4.8626 -2.0079 -2.9555 37 1 4.9139 -0.5337 -4.9274 38 1 4.3436 1.8505 -4.6972 39 1 4.5244 3.7440 -2.2332 40 1 3.1850 3.5343 -3.3866 41 1 2.9044 3.2991 -1.6447 42 1 -0.1531 2.7360 0.6574 43 1 -1.5525 5.1437 5.5483 44 1 -0.9729 2.5447 4.4950 45 1 -1.3899 1.6378 3.0213 46 1 1.3067 1.5700 4.4499 47 1 0.0674 0.2940 4.5114 48 1 0.8896 0.6630 2.9762 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424779902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:19 Heat of formation + Delta-G solvation = -47.786471 kcal Electronic energy + Delta-G solvation = -25645.978643 eV Core-core repulsion = 22278.357460 eV Total energy + Delta-G solvation = -3367.621183 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.08481 -38.96631 -35.58809 -34.74339 -33.03558 -32.35108 -31.67249 -30.80828 -28.83460 -27.15974 -26.79942 -24.45805 -23.15005 -22.09120 -21.91833 -20.65520 -19.53306 -19.23649 -17.19405 -16.39981 -15.96047 -15.55850 -15.26123 -15.06290 -14.71338 -14.35457 -13.94141 -13.55996 -13.39844 -13.22708 -13.14484 -13.00142 -12.64526 -12.51237 -12.25237 -12.14087 -11.99482 -11.60515 -11.44116 -11.26436 -11.04375 -11.01070 -10.95677 -10.86517 -10.80820 -10.75268 -10.50138 -10.29357 -10.14255 -9.63766 -9.04150 -8.85693 -8.82107 -8.55651 -8.47333 -7.75505 -6.10864 -4.20133 1.29889 1.33304 3.25747 3.31303 3.32263 3.46871 3.67752 4.14633 4.39496 4.74726 4.80725 4.91954 4.95354 4.99794 5.17579 5.19200 5.22307 5.30423 5.39530 5.57462 5.60127 5.63772 5.71979 5.75902 5.82454 5.84348 6.00473 6.02809 6.13215 6.16276 6.26243 6.37695 6.39050 6.40452 6.43853 6.46165 6.52809 6.66127 6.69184 6.97624 7.03445 7.20776 7.38099 7.50716 7.63694 7.75906 7.92952 8.20238 8.72685 8.80920 9.20357 9.47707 10.94316 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021318 B = 0.003565 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.106283 B = 7853.319530 C = 8461.808147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.084 0.916 5 C -0.064 4.064 6 C -0.072 4.072 7 C -0.111 4.111 8 C -0.127 4.127 9 C -0.126 4.126 10 C -0.121 4.121 11 C -0.081 4.081 12 C -0.122 4.122 13 C 0.509 3.491 14 O -0.551 6.551 15 N -0.708 5.708 16 C 0.270 3.730 17 H 0.049 0.951 18 C -0.534 4.534 19 H 0.059 0.941 20 C 0.067 3.933 21 N -0.882 5.882 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.277 1.277 26 C -0.126 4.126 27 C -0.139 4.139 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.387 0.613 43 H 0.264 0.736 44 H 0.098 0.902 45 H 0.030 0.970 46 H 0.049 0.951 47 H 0.023 0.977 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.798 -9.270 -15.379 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.148 4.148 3 C -0.125 4.125 4 H 0.103 0.897 5 C -0.102 4.102 6 C -0.072 4.072 7 C -0.129 4.129 8 C -0.145 4.145 9 C -0.144 4.144 10 C -0.139 4.139 11 C -0.081 4.081 12 C -0.179 4.179 13 C 0.293 3.707 14 O -0.430 6.430 15 N -0.355 5.355 16 C 0.168 3.832 17 H 0.067 0.933 18 C -0.572 4.572 19 H 0.078 0.922 20 C -0.136 4.136 21 N -0.520 5.520 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.165 4.165 27 C -0.196 4.196 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.219 0.781 43 H 0.074 0.926 44 H 0.116 0.884 45 H 0.049 0.951 46 H 0.068 0.932 47 H 0.042 0.958 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.290 -9.186 -14.467 19.037 hybrid contribution -1.031 0.666 -0.555 1.347 sum 7.259 -8.520 -15.022 18.734 Atomic orbital electron populations 1.21944 0.95408 1.01651 1.02999 1.21484 0.96305 0.94512 1.02474 1.21377 0.96170 0.97700 0.97208 0.89748 1.20427 0.94278 1.02353 0.93145 1.19831 0.98726 0.93545 0.95139 1.21091 0.99436 0.94853 0.97566 1.21090 1.00902 0.99593 0.92925 1.21065 1.00891 0.93922 0.98504 1.21000 1.00579 0.95483 0.96859 1.19825 0.99214 0.96165 0.92890 1.20905 1.02132 0.91875 1.02944 1.20255 0.82522 0.79057 0.88825 1.90654 1.50876 1.59947 1.41568 1.46561 1.15983 1.57922 1.15057 1.18748 0.95227 0.90480 0.78759 0.93298 1.21205 1.23714 1.19067 0.93232 0.92240 1.24879 0.96710 0.97061 0.94985 1.69885 1.42812 1.41246 0.98047 0.86543 0.81511 0.81822 0.77423 1.20196 1.21169 1.20215 1.21922 0.96192 0.95512 1.02892 1.21837 0.99651 0.98429 0.99703 0.92859 0.91185 0.92746 0.91151 0.91585 0.90402 0.89968 0.86029 0.86397 0.86492 0.86363 0.91092 0.91638 0.90763 0.78069 0.92555 0.88361 0.95083 0.93229 0.95790 0.94268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.29 37.16 0.35 -1.76 16 2 C -0.11 -1.43 5.18 -26.73 -0.14 -1.57 16 3 C -0.10 -1.47 1.92 -91.77 -0.18 -1.65 16 4 H 0.08 1.11 7.03 -51.93 -0.36 0.75 16 5 C -0.06 -0.88 3.58 -27.89 -0.10 -0.98 16 6 C -0.07 -0.87 4.56 -104.63 -0.48 -1.35 16 7 C -0.11 -1.23 8.23 -39.58 -0.33 -1.55 16 8 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 9 C -0.13 -1.21 10.05 -39.59 -0.40 -1.60 16 10 C -0.12 -1.23 9.70 -39.59 -0.38 -1.62 16 11 C -0.08 -0.92 5.88 -104.63 -0.62 -1.53 16 12 C -0.12 -1.27 9.22 36.00 0.33 -0.94 16 13 C 0.51 9.65 4.78 -10.98 -0.05 9.60 16 14 O -0.55 -12.49 13.80 5.56 0.08 -12.42 16 15 N -0.71 -14.21 3.89 -54.93 -0.21 -14.42 16 16 C 0.27 6.66 2.24 -69.08 -0.16 6.50 16 17 H 0.05 1.42 7.50 -51.93 -0.39 1.03 16 18 C -0.53 -13.93 8.73 -34.44 -0.30 -14.24 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 21 N -0.88 -24.60 11.30 55.43 0.63 -23.97 16 22 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.13 -3.02 5.45 -26.74 -0.15 -3.16 16 27 C -0.14 -3.04 8.59 37.15 0.32 -2.72 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.07 6.76 -51.93 -0.35 0.72 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.82 6.19 -51.93 -0.32 0.50 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.12 6.99 -51.93 -0.36 0.75 16 34 H 0.08 1.19 7.94 -51.93 -0.41 0.77 16 35 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 41 H 0.07 0.85 5.49 -51.93 -0.29 0.56 16 42 H 0.39 6.91 8.25 -40.82 -0.34 6.58 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.10 2.62 5.96 -51.93 -0.31 2.31 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.04 0.82 5.78 -51.93 -0.30 0.52 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -29.31 373.61 -9.70 -39.01 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -8.03 Total: 9.21 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -2.76 Total: -18.53 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.41 Total: -38.40 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.31 -9.70 -39.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424779902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.776 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds