Wall clock time and date at job start Tue Mar 31 2020 10:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.31000 * 120.00263 * 2 1 4 4 C 1.50696 * 120.00127 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.47228 * 134.99376 * 4 3 2 6 6 C 1.35906 * 116.99998 * 179.97438 * 5 4 3 7 7 C 1.38729 * 120.05226 * 180.02562 * 6 5 4 8 8 C 1.38148 * 119.94143 * 180.02562 * 7 6 5 9 9 C 1.38274 * 120.05413 * 0.02562 * 8 7 6 10 10 C 1.50696 * 119.94174 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47055 * 90.00075 * 10 9 8 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46744 * 55.00049 * 12 11 10 14 14 C 1.52996 * 109.47102 * 175.00294 * 12 11 10 15 15 N 1.46895 * 109.47374 * 295.00371 * 12 11 10 16 16 C 1.46894 * 111.00510 * 154.99843 * 15 12 11 17 17 C 1.50695 * 109.47558 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00228 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00174 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99762 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00229 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46909 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47097 * 119.99753 * 21 19 17 24 24 H 1.48494 * 109.47097 * 239.99946 * 21 19 17 25 25 C 1.38261 * 120.11237 * 0.25618 * 9 8 7 26 26 C 1.38147 * 120.05605 * 359.44255 * 25 9 8 27 27 H 1.09000 * 109.47144 * 59.99477 * 1 2 3 28 28 H 1.08996 * 109.47265 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47024 * 300.00087 * 1 2 3 30 30 H 1.08003 * 120.00127 * 180.02562 * 2 1 3 31 31 H 1.07996 * 120.00163 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47063 * 14.99751 * 4 3 2 33 33 H 1.08998 * 109.47347 * 254.99971 * 4 3 2 34 34 H 1.07996 * 120.03276 * 0.02562 * 7 6 5 35 35 H 1.07996 * 119.97313 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47324 * 329.99787 * 10 9 8 37 37 H 1.09004 * 109.47043 * 210.00155 * 10 9 8 38 38 H 1.09001 * 109.46832 * 59.99966 * 11 10 9 39 39 H 1.08993 * 109.47194 * 299.99487 * 11 10 9 40 40 H 1.08997 * 109.47474 * 60.00037 * 14 12 11 41 41 H 1.09002 * 109.46922 * 180.02562 * 14 12 11 42 42 H 1.09006 * 109.46822 * 299.99923 * 14 12 11 43 43 H 1.00902 * 111.00088 * 278.95578 * 15 12 11 44 44 H 1.09003 * 109.47228 * 300.00373 * 16 15 12 45 45 H 1.09005 * 109.46899 * 59.99570 * 16 15 12 46 46 H 0.97004 * 119.99845 * 180.02562 * 20 19 17 47 47 H 1.08000 * 119.97559 * 179.70901 * 25 9 8 48 48 H 1.07995 * 120.03141 * 180.25480 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4086 2.4396 0.0006 5 8 1.9958 3.3282 0.9533 6 6 1.4316 4.5581 1.0794 7 6 1.9513 5.4714 1.9852 8 6 1.3757 6.7208 2.1118 9 6 0.2822 7.0612 1.3370 10 6 -0.3441 8.4247 1.4776 11 6 0.3261 9.3965 0.5044 12 6 -0.3102 10.7807 0.6467 13 1 -0.2552 11.1006 1.6873 14 6 0.4413 11.7804 -0.2346 15 7 -1.7166 10.7186 0.2271 16 6 -2.5046 11.7798 0.8681 17 6 -3.9386 11.6840 0.4152 18 1 -4.2350 10.9122 -0.2798 19 6 -4.8722 12.5822 0.8871 20 7 -4.5112 13.5223 1.7329 21 14 -6.6497 12.4639 0.3251 22 1 -6.7952 11.3285 -0.6209 23 1 -7.5275 12.2435 1.5024 24 1 -7.0393 13.7259 -0.3535 25 6 -0.2412 6.1507 0.4377 26 6 0.3346 4.9023 0.3028 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.0470 -0.9353 -0.0004 31 1 3.2420 1.1344 0.0004 32 1 0.3673 2.2579 0.2669 33 1 1.4569 2.8875 -0.9919 34 1 2.8051 5.2058 2.5909 35 1 1.7801 7.4323 2.8165 36 1 -0.2102 8.7825 2.4984 37 1 -1.4086 8.3606 1.2518 38 1 0.1922 9.0386 -0.5164 39 1 1.3905 9.4607 0.7302 40 1 0.3863 11.4606 -1.2752 41 1 -0.0118 12.7666 -0.1329 42 1 1.4849 11.8265 0.0768 43 1 -1.7966 10.7656 -0.7776 44 1 -2.4574 11.6637 1.9509 45 1 -2.0991 12.7524 0.5890 46 1 -5.1680 14.1540 2.0653 47 1 -1.0982 6.4173 -0.1630 48 1 -0.0719 4.1929 -0.4027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426001291.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:58 Heat of formation + Delta-G solvation = -19.997271 kcal Electronic energy + Delta-G solvation = -23392.448571 eV Core-core repulsion = 20026.032418 eV Total energy + Delta-G solvation = -3366.416153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.25969 -38.19123 -36.74662 -35.71399 -33.32677 -32.18953 -31.04437 -30.00128 -28.92053 -27.56159 -25.99043 -25.87572 -23.60278 -22.65358 -21.69536 -20.73597 -20.00128 -19.01675 -18.34980 -16.65840 -16.32774 -16.03113 -15.39108 -15.06859 -14.89531 -14.45152 -14.32979 -14.04082 -13.90278 -13.70188 -13.47567 -13.38966 -12.98634 -12.76995 -12.46193 -12.35542 -12.21043 -11.98788 -11.71168 -11.68479 -11.33209 -11.24941 -10.98591 -10.87121 -10.76888 -10.65988 -10.50464 -10.33896 -10.19827 -9.79371 -9.56023 -9.12481 -8.98221 -8.47583 -8.02271 -7.20247 -6.01810 -4.03265 1.35770 1.46485 1.59831 3.17478 3.31291 3.38637 3.43467 3.78599 4.39744 4.44181 4.59612 4.78400 4.81920 4.84699 4.92760 4.98341 5.01433 5.19135 5.22846 5.34225 5.35827 5.39566 5.47560 5.48757 5.56237 5.62480 5.72079 5.75363 5.89310 6.01237 6.09320 6.10374 6.11471 6.25126 6.26750 6.31098 6.37084 6.45234 6.57445 6.62621 6.71808 6.83607 6.92926 7.31440 7.34507 7.48750 7.81686 8.16452 8.44630 8.66671 9.06925 9.61618 11.09220 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.002249 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.297108 B =12445.827441 C =13581.381089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.142 4.142 3 C -0.163 4.163 4 C 0.085 3.915 5 O -0.316 6.316 6 C 0.114 3.886 7 C -0.151 4.151 8 C -0.082 4.082 9 C -0.104 4.104 10 C -0.073 4.073 11 C -0.094 4.094 12 C 0.079 3.921 13 H 0.070 0.930 14 C -0.178 4.178 15 N -0.682 5.682 16 C 0.194 3.806 17 C -0.511 4.511 18 H 0.062 0.938 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.076 4.076 26 C -0.207 4.207 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.327 0.673 44 H 0.026 0.974 45 H -0.014 1.014 46 H 0.260 0.740 47 H 0.127 0.873 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.341 -22.244 -3.045 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C -0.181 4.181 4 C 0.010 3.990 5 O -0.230 6.230 6 C 0.069 3.931 7 C -0.170 4.170 8 C -0.100 4.100 9 C -0.104 4.104 10 C -0.110 4.110 11 C -0.132 4.132 12 C -0.032 4.032 13 H 0.088 0.912 14 C -0.237 4.237 15 N -0.312 5.312 16 C 0.067 3.933 17 C -0.550 4.550 18 H 0.080 0.920 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.212 1.212 25 C -0.094 4.094 26 C -0.226 4.226 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.144 0.856 44 H 0.044 0.956 45 H 0.004 0.996 46 H 0.070 0.930 47 H 0.145 0.855 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.242 -22.655 -2.365 26.864 hybrid contribution -0.750 0.834 -0.905 1.441 sum 13.492 -21.821 -3.270 25.863 Atomic orbital electron populations 1.20980 0.93134 1.02830 1.02347 1.22873 0.96475 0.97728 0.98953 1.22529 1.00420 0.92415 1.02754 1.21814 0.96844 0.88031 0.92263 1.86050 1.55821 1.22493 1.58627 1.18948 0.93200 0.84799 0.96150 1.20372 1.02634 0.93292 1.00702 1.20916 0.95238 0.95166 0.98684 1.20103 0.96390 0.97070 0.96821 1.20522 1.01309 0.89487 0.99691 1.21521 0.97819 0.94665 0.99203 1.21561 0.89760 0.93040 0.98866 0.91192 1.22488 1.00227 1.00819 1.00215 1.60753 1.06353 1.51970 1.12109 1.19563 0.91931 0.86941 0.94845 1.21238 0.93252 1.13756 1.26771 0.92004 1.24996 0.99120 0.95322 0.95250 1.69974 1.34326 1.17489 1.31971 0.86455 0.84736 0.77802 0.78482 1.19697 1.21034 1.21175 1.20949 0.99040 0.92202 0.97199 1.21203 0.98838 0.99081 1.03444 0.91358 0.91676 0.91095 0.86426 0.86271 0.91131 0.91209 0.85637 0.85481 0.91714 0.89081 0.92395 0.92904 0.93080 0.92505 0.93267 0.85599 0.95569 0.99633 0.93037 0.85464 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 8.70 36.00 0.31 -0.45 16 2 C -0.14 -0.89 10.26 -36.03 -0.37 -1.26 16 3 C -0.16 -1.23 9.89 -36.03 -0.36 -1.58 16 4 C 0.09 0.74 4.87 36.00 0.18 0.92 16 5 O -0.32 -3.66 10.12 -19.44 -0.20 -3.86 16 6 C 0.11 1.39 6.69 -39.22 -0.26 1.13 16 7 C -0.15 -1.81 9.99 -39.43 -0.39 -2.21 16 8 C -0.08 -1.00 9.69 -39.60 -0.38 -1.38 16 9 C -0.10 -1.37 5.13 -104.60 -0.54 -1.91 16 10 C -0.07 -1.05 5.23 -27.89 -0.15 -1.20 16 11 C -0.09 -1.35 4.87 -26.73 -0.13 -1.48 16 12 C 0.08 1.34 2.59 -67.71 -0.18 1.17 16 13 H 0.07 1.28 7.80 -51.93 -0.40 0.87 16 14 C -0.18 -2.79 9.16 37.16 0.34 -2.45 16 15 N -0.68 -14.06 5.69 -108.00 -0.61 -14.67 16 16 C 0.19 5.00 5.24 -4.98 -0.03 4.98 16 17 C -0.51 -14.39 9.32 -34.44 -0.32 -14.71 16 18 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 19 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 21 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 C -0.08 -0.96 9.69 -39.61 -0.38 -1.35 16 26 C -0.21 -2.43 9.04 -39.43 -0.36 -2.78 16 27 H 0.07 0.35 8.02 -51.93 -0.42 -0.06 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.43 7.49 -51.93 -0.39 0.04 16 30 H 0.12 0.57 8.06 -52.48 -0.42 0.14 16 31 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.07 0.56 5.50 -51.92 -0.29 0.28 16 33 H 0.07 0.55 7.66 -51.93 -0.40 0.16 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.09 1.51 7.69 -51.93 -0.40 1.11 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 41 H 0.06 0.99 7.45 -51.93 -0.39 0.60 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.33 6.58 8.46 -39.29 -0.33 6.24 16 44 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 45 H -0.01 -0.39 7.44 -51.93 -0.39 -0.77 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 48 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -30.41 392.83 -10.63 -41.04 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -8.34 Total: 4.09 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -3.11 Total: -23.10 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.12 Total: -40.78 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.20 Total: -3.86 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.41 -10.63 -41.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426001291.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.042 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds