Wall clock time and date at job start Tue Mar 31 2020 10:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50693 * 120.00045 * 2 1 4 4 N 1.46900 * 109.47520 * 124.16227 * 3 2 1 5 5 C 1.46898 * 110.99566 * 301.33997 * 4 3 2 6 6 C 1.50703 * 109.47242 * 289.41318 * 5 4 3 7 7 H 1.07997 * 119.99727 * 355.32034 * 6 5 4 8 8 C 1.37876 * 119.99855 * 175.32331 * 6 5 4 9 9 N 1.31516 * 120.00054 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99499 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47140 * 90.00400 * 10 8 6 12 12 H 1.48509 * 109.47051 * 210.00062 * 10 8 6 13 13 H 1.48490 * 109.47508 * 329.99860 * 10 8 6 14 14 C 1.46905 * 111.00095 * 65.28764 * 4 3 2 15 15 C 1.50705 * 109.46585 * 66.05069 * 14 4 3 16 16 C 1.38262 * 119.94379 * 90.00333 * 15 14 4 17 17 C 1.38142 * 120.05391 * 179.97438 * 16 15 14 18 18 C 1.38730 * 119.94917 * 359.97438 * 17 16 15 19 19 O 1.35902 * 120.06008 * 180.02562 * 18 17 16 20 20 C 1.42897 * 116.99805 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.46790 * 180.02562 * 20 19 18 22 22 C 1.53003 * 109.47050 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.47050 * 180.02562 * 22 21 20 24 24 C 1.38741 * 119.88458 * 0.28052 * 18 17 16 25 25 C 1.38138 * 119.94018 * 359.46645 * 24 18 17 26 26 H 1.08005 * 120.00095 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.00478 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.99572 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47466 * 4.15966 * 3 2 1 30 30 H 1.09003 * 109.47269 * 244.16041 * 3 2 1 31 31 H 1.08997 * 109.47644 * 49.41564 * 5 4 3 32 32 H 1.09009 * 109.46914 * 169.41115 * 5 4 3 33 33 H 0.97005 * 119.99633 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47036 * 306.05692 * 14 4 3 35 35 H 1.08993 * 109.47065 * 186.04700 * 14 4 3 36 36 H 1.07995 * 119.97117 * 0.02562 * 16 15 14 37 37 H 1.08009 * 120.02888 * 179.97438 * 17 16 15 38 38 H 1.08998 * 109.47340 * 300.00185 * 20 19 18 39 39 H 1.09001 * 109.46939 * 60.00677 * 20 19 18 40 40 H 1.09007 * 109.47106 * 299.99793 * 21 20 19 41 41 H 1.08997 * 109.47602 * 60.00095 * 21 20 19 42 42 H 1.08998 * 109.46962 * 299.99650 * 22 21 20 43 43 H 1.09001 * 109.47057 * 59.99983 * 22 21 20 44 44 H 1.08998 * 109.46952 * 299.99656 * 23 22 21 45 45 H 1.08990 * 109.47283 * 59.99612 * 23 22 21 46 46 H 1.09001 * 109.46895 * 180.02562 * 23 22 21 47 47 H 1.08001 * 120.02405 * 179.72064 * 24 18 17 48 48 H 1.08004 * 119.97026 * 180.23317 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9818 1.3403 1.1460 5 6 2.2509 1.1884 2.4111 6 6 1.4490 2.4356 2.6809 7 1 1.5375 3.2873 2.0228 8 6 0.6025 2.4891 3.7679 9 7 0.4952 1.4521 4.5696 10 14 -0.3919 4.0348 4.1018 11 1 -1.6988 3.9432 3.4026 12 1 -0.6207 4.1702 5.5629 13 1 0.3531 5.2196 3.6056 14 6 4.0264 0.3157 1.0153 15 6 4.9086 0.6451 -0.1614 16 6 6.0293 1.4352 0.0161 17 6 6.8398 1.7381 -1.0608 18 6 6.5288 1.2485 -2.3210 19 8 7.3249 1.5447 -3.3819 20 6 6.9432 1.0067 -4.6495 21 6 7.9520 1.4438 -5.7136 22 6 7.5430 0.8683 -7.0710 23 6 8.5521 1.3048 -8.1350 24 6 5.4007 0.4603 -2.4974 25 6 4.5964 0.1559 -1.4164 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5401 0.9353 -0.0004 28 1 1.8499 -0.9354 0.0004 29 1 1.3575 2.1322 0.0745 30 1 2.6330 1.3958 -0.9249 31 1 1.5794 0.3325 2.3424 32 1 2.9600 1.0295 3.2236 33 1 -0.1001 1.4900 5.3346 34 1 3.5625 -0.6584 0.8601 35 1 4.6273 0.2914 1.9243 36 1 6.2716 1.8151 0.9975 37 1 7.7149 2.3557 -0.9218 38 1 6.9250 -0.0816 -4.5918 39 1 5.9518 1.3731 -4.9160 40 1 7.9705 2.5321 -5.7715 41 1 8.9432 1.0772 -5.4470 42 1 7.5241 -0.2200 -7.0135 43 1 6.5518 1.2354 -7.3375 44 1 8.5714 2.3931 -8.1926 45 1 9.5430 0.9376 -7.8683 46 1 8.2605 0.8952 -9.1021 47 1 5.1541 0.0817 -3.4783 48 1 3.7202 -0.4608 -1.5525 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430111469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:47 Heat of formation + Delta-G solvation = -4.884650 kcal Electronic energy + Delta-G solvation = -24115.193180 eV Core-core repulsion = 20749.432359 eV Total energy + Delta-G solvation = -3365.760821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.13376 -38.30246 -36.67753 -35.35122 -32.78254 -32.35425 -31.00137 -30.44293 -29.37735 -26.97461 -25.94520 -24.49114 -23.48539 -22.41762 -21.32467 -21.12518 -20.65542 -18.75518 -18.06783 -16.58293 -16.25350 -16.03054 -15.20930 -15.04856 -14.96255 -14.69414 -14.37007 -14.22203 -14.04460 -13.57176 -13.45503 -13.22376 -13.04570 -12.73099 -12.43999 -12.14368 -11.96253 -11.59866 -11.47307 -11.36587 -11.30772 -11.20660 -11.00211 -10.89262 -10.73180 -10.69074 -10.58466 -10.51542 -10.37231 -9.88929 -9.20972 -8.81863 -8.66882 -8.38056 -7.92168 -7.17842 -5.98041 -3.98515 1.53755 1.61389 2.92033 3.09832 3.33570 3.39978 3.44621 3.93448 4.46917 4.49199 4.52785 4.66641 4.87589 4.91026 4.96944 5.08684 5.16463 5.17442 5.33562 5.36697 5.37697 5.39133 5.45090 5.54664 5.55296 5.62424 5.69403 5.75271 5.81052 5.82936 5.91479 6.00228 6.12021 6.23606 6.30256 6.44083 6.45794 6.53356 6.70880 6.94506 6.96685 7.18603 7.28980 7.37677 7.47413 7.48848 7.85845 8.12812 8.23637 8.58939 9.09340 9.65050 11.12423 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.002520 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.617030 B =11110.589684 C =11329.497335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.181 4.181 3 C 0.088 3.912 4 N -0.523 5.523 5 C 0.190 3.810 6 C -0.500 4.500 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.089 3.911 15 C -0.095 4.095 16 C -0.061 4.061 17 C -0.153 4.153 18 C 0.117 3.883 19 O -0.320 6.320 20 C 0.060 3.940 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.152 4.152 24 C -0.210 4.210 25 C -0.076 4.076 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.005 0.995 32 H 0.023 0.977 33 H 0.260 0.740 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.121 0.879 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.877 -3.796 -20.220 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.200 4.200 3 C -0.040 4.040 4 N -0.246 5.246 5 C 0.065 3.935 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.039 4.039 15 C -0.096 4.096 16 C -0.079 4.079 17 C -0.172 4.172 18 C 0.072 3.928 19 O -0.234 6.234 20 C -0.016 4.016 21 C -0.157 4.157 22 C -0.160 4.160 23 C -0.209 4.209 24 C -0.229 4.229 25 C -0.095 4.095 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.023 0.977 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.139 0.861 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.205 -3.261 -20.029 24.211 hybrid contribution -1.314 -0.251 0.271 1.364 sum 11.891 -3.512 -19.759 23.327 Atomic orbital electron populations 1.23684 0.96049 1.01079 1.00774 1.23530 0.96695 0.99772 1.00052 1.21283 0.94588 0.94218 0.93945 1.62453 1.12978 1.45063 1.04092 1.19789 0.92332 0.97043 0.84318 1.21119 1.22827 0.99758 1.10186 0.92042 1.24962 0.97086 0.96325 0.96213 1.69961 1.38449 1.29629 1.15805 0.86555 0.80346 0.83627 0.77237 1.20837 1.21353 1.19819 1.21016 0.93604 0.94035 0.95225 1.19891 0.96089 0.98577 0.95012 1.20889 0.93227 0.95429 0.98366 1.20387 1.02381 1.04370 0.90037 1.18930 0.90546 0.95905 0.87397 1.86014 1.50233 1.71472 1.15673 1.22780 0.98796 0.98162 0.81833 1.21576 0.99116 1.02117 0.92873 1.21440 0.99739 1.00937 0.93870 1.21748 0.99183 1.01575 0.98397 1.21115 0.97319 1.04598 0.99842 1.20877 0.98169 0.98586 0.91832 0.89768 0.88502 0.88767 0.90000 0.91781 0.97670 0.95888 0.93074 0.94813 0.90608 0.85153 0.85625 0.92261 0.92147 0.90825 0.90890 0.91702 0.91627 0.92531 0.92567 0.92510 0.86097 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 14.32 29.02 0.42 -2.77 16 2 C -0.18 -3.29 7.40 -36.03 -0.27 -3.56 16 3 C 0.09 1.70 5.33 -4.98 -0.03 1.68 16 4 N -0.52 -11.12 4.66 -238.96 -1.11 -12.24 16 5 C 0.19 4.87 4.56 -4.98 -0.02 4.85 16 6 C -0.50 -13.97 8.52 -34.44 -0.29 -14.26 16 7 H 0.06 1.72 7.57 -52.49 -0.40 1.33 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 10 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 14 C 0.09 1.59 4.96 -4.97 -0.02 1.57 16 15 C -0.09 -1.50 4.89 -104.60 -0.51 -2.01 16 16 C -0.06 -0.90 9.69 -39.61 -0.38 -1.29 16 17 C -0.15 -2.13 9.99 -39.43 -0.39 -2.53 16 18 C 0.12 1.60 6.69 -39.21 -0.26 1.34 16 19 O -0.32 -4.02 10.14 -19.43 -0.20 -4.22 16 20 C 0.06 0.55 4.74 37.16 0.18 0.73 16 21 C -0.12 -0.88 5.58 -26.73 -0.15 -1.03 16 22 C -0.12 -0.72 5.93 -26.73 -0.16 -0.88 16 23 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 24 C -0.21 -2.75 9.04 -39.43 -0.36 -3.10 16 25 C -0.08 -1.08 7.88 -39.61 -0.31 -1.40 16 26 H 0.08 1.35 8.06 -52.48 -0.42 0.93 16 27 H 0.10 1.78 7.84 -52.49 -0.41 1.37 16 28 H 0.09 1.60 6.84 -52.48 -0.36 1.25 16 29 H 0.08 1.74 6.96 -51.93 -0.36 1.38 16 30 H 0.06 1.13 5.79 -51.93 -0.30 0.83 16 31 H 0.01 0.15 6.70 -51.93 -0.35 -0.20 16 32 H 0.02 0.63 7.84 -51.92 -0.41 0.22 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.03 0.59 6.34 -51.93 -0.33 0.26 16 35 H 0.08 1.35 7.82 -51.93 -0.41 0.95 16 36 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 37 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 38 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 39 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 40 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.12 1.31 6.30 -52.49 -0.33 0.98 16 48 H 0.12 1.61 7.96 -52.48 -0.42 1.20 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -30.26 386.59 -10.29 -40.56 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.23 Total: 0.84 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -2.30 Total: -21.62 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.38 Total: -38.14 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.20 Total: -4.22 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.26 -10.29 -40.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430111469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.672 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds