Wall clock time and date at job start Tue Mar 31 2020 10:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50693 * 120.00045 * 2 1 4 4 N 1.46900 * 109.47520 * 124.16227 * 3 2 1 5 5 C 1.46898 * 110.99566 * 301.33997 * 4 3 2 6 6 C 1.50703 * 109.47242 * 289.41318 * 5 4 3 7 7 H 1.07997 * 119.99727 * 355.32034 * 6 5 4 8 8 C 1.37876 * 119.99855 * 175.32331 * 6 5 4 9 9 N 1.31516 * 120.00054 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99499 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47140 * 90.00400 * 10 8 6 12 12 H 1.48509 * 109.47051 * 210.00062 * 10 8 6 13 13 H 1.48490 * 109.47508 * 329.99860 * 10 8 6 14 14 C 1.46905 * 111.00095 * 65.28764 * 4 3 2 15 15 C 1.50705 * 109.46585 * 66.05069 * 14 4 3 16 16 C 1.38262 * 119.94379 * 90.00333 * 15 14 4 17 17 C 1.38142 * 120.05391 * 179.97438 * 16 15 14 18 18 C 1.38730 * 119.94917 * 359.97438 * 17 16 15 19 19 O 1.35902 * 120.06008 * 180.02562 * 18 17 16 20 20 C 1.42897 * 116.99805 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.46790 * 180.02562 * 20 19 18 22 22 C 1.53003 * 109.47050 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.47050 * 180.02562 * 22 21 20 24 24 C 1.38741 * 119.88458 * 0.28052 * 18 17 16 25 25 C 1.38138 * 119.94018 * 359.46645 * 24 18 17 26 26 H 1.08005 * 120.00095 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.00478 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.99572 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47466 * 4.15966 * 3 2 1 30 30 H 1.09003 * 109.47269 * 244.16041 * 3 2 1 31 31 H 1.08997 * 109.47644 * 49.41564 * 5 4 3 32 32 H 1.09009 * 109.46914 * 169.41115 * 5 4 3 33 33 H 0.97005 * 119.99633 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47036 * 306.05692 * 14 4 3 35 35 H 1.08993 * 109.47065 * 186.04700 * 14 4 3 36 36 H 1.07995 * 119.97117 * 0.02562 * 16 15 14 37 37 H 1.08009 * 120.02888 * 179.97438 * 17 16 15 38 38 H 1.08998 * 109.47340 * 300.00185 * 20 19 18 39 39 H 1.09001 * 109.46939 * 60.00677 * 20 19 18 40 40 H 1.09007 * 109.47106 * 299.99793 * 21 20 19 41 41 H 1.08997 * 109.47602 * 60.00095 * 21 20 19 42 42 H 1.08998 * 109.46962 * 299.99650 * 22 21 20 43 43 H 1.09001 * 109.47057 * 59.99983 * 22 21 20 44 44 H 1.08998 * 109.46952 * 299.99656 * 23 22 21 45 45 H 1.08990 * 109.47283 * 59.99612 * 23 22 21 46 46 H 1.09001 * 109.46895 * 180.02562 * 23 22 21 47 47 H 1.08001 * 120.02405 * 179.72064 * 24 18 17 48 48 H 1.08004 * 119.97026 * 180.23317 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9818 1.3403 1.1460 5 6 2.2509 1.1884 2.4111 6 6 1.4490 2.4356 2.6809 7 1 1.5375 3.2873 2.0228 8 6 0.6025 2.4891 3.7679 9 7 0.4952 1.4521 4.5696 10 14 -0.3919 4.0348 4.1018 11 1 -1.6988 3.9432 3.4026 12 1 -0.6207 4.1702 5.5629 13 1 0.3531 5.2196 3.6056 14 6 4.0264 0.3157 1.0153 15 6 4.9086 0.6451 -0.1614 16 6 6.0293 1.4352 0.0161 17 6 6.8398 1.7381 -1.0608 18 6 6.5288 1.2485 -2.3210 19 8 7.3249 1.5447 -3.3819 20 6 6.9432 1.0067 -4.6495 21 6 7.9520 1.4438 -5.7136 22 6 7.5430 0.8683 -7.0710 23 6 8.5521 1.3048 -8.1350 24 6 5.4007 0.4603 -2.4974 25 6 4.5964 0.1559 -1.4164 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5401 0.9353 -0.0004 28 1 1.8499 -0.9354 0.0004 29 1 1.3575 2.1322 0.0745 30 1 2.6330 1.3958 -0.9249 31 1 1.5794 0.3325 2.3424 32 1 2.9600 1.0295 3.2236 33 1 -0.1001 1.4900 5.3346 34 1 3.5625 -0.6584 0.8601 35 1 4.6273 0.2914 1.9243 36 1 6.2716 1.8151 0.9975 37 1 7.7149 2.3557 -0.9218 38 1 6.9250 -0.0816 -4.5918 39 1 5.9518 1.3731 -4.9160 40 1 7.9705 2.5321 -5.7715 41 1 8.9432 1.0772 -5.4470 42 1 7.5241 -0.2200 -7.0135 43 1 6.5518 1.2354 -7.3375 44 1 8.5714 2.3931 -8.1926 45 1 9.5430 0.9376 -7.8683 46 1 8.2605 0.8952 -9.1021 47 1 5.1541 0.0817 -3.4783 48 1 3.7202 -0.4608 -1.5525 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430111469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:46 Heat of formation + Delta-G solvation = -20.348772 kcal Electronic energy + Delta-G solvation = -24115.863754 eV Core-core repulsion = 20749.432359 eV Total energy + Delta-G solvation = -3366.431396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17242 -39.57283 -37.98571 -35.97149 -34.81271 -33.85201 -32.09261 -31.69066 -30.20602 -28.82816 -27.36925 -25.60287 -24.88629 -23.34345 -22.76245 -22.03195 -21.82323 -20.26364 -19.03754 -18.34039 -17.29941 -17.20826 -16.79395 -16.37760 -16.15115 -16.03685 -15.62702 -15.49149 -15.11217 -14.76032 -14.48038 -14.33066 -14.10818 -13.99043 -13.80855 -13.23135 -13.13330 -12.96365 -12.83917 -12.69015 -12.53833 -12.32822 -12.21939 -12.14628 -12.07844 -11.98892 -11.86349 -11.75524 -11.59480 -11.41802 -11.22212 -10.57320 -10.18335 -9.87053 -9.08877 -8.84609 -8.14841 -6.23565 0.45067 0.48139 1.40836 1.41891 1.46769 1.53321 2.24046 2.42267 2.79722 3.17266 3.59552 3.83004 3.93408 3.95313 3.96795 4.06932 4.10267 4.16204 4.25038 4.35028 4.35970 4.44299 4.48290 4.59257 4.62369 4.68969 4.80278 4.83643 4.87261 4.92618 4.98758 5.04481 5.10475 5.16122 5.23455 5.26110 5.32535 5.32769 5.37663 5.44361 5.45788 5.69032 5.73708 5.79176 5.86478 5.93025 6.13659 6.41929 6.50897 6.67891 6.92418 7.45020 8.94845 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.002520 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.617030 B =11110.589684 C =11329.497335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.187 4.187 3 C 0.093 3.907 4 N -0.532 5.532 5 C 0.207 3.793 6 C -0.513 4.513 7 H 0.056 0.944 8 C 0.004 3.996 9 N -0.931 5.931 10 Si 0.961 3.039 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.094 3.906 15 C -0.112 4.112 16 C -0.069 4.069 17 C -0.160 4.160 18 C 0.117 3.883 19 O -0.330 6.330 20 C 0.052 3.948 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.153 4.153 24 C -0.206 4.206 25 C -0.077 4.077 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.084 0.916 31 H -0.016 1.016 32 H -0.004 1.004 33 H 0.262 0.738 34 H 0.039 0.961 35 H 0.067 0.933 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.147 0.853 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.031 -3.718 -22.252 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.207 4.207 3 C -0.035 4.035 4 N -0.255 5.255 5 C 0.081 3.919 6 C -0.552 4.552 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.786 3.214 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.193 1.193 14 C -0.033 4.033 15 C -0.113 4.113 16 C -0.087 4.087 17 C -0.179 4.179 18 C 0.072 3.928 19 O -0.244 6.244 20 C -0.023 4.023 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.210 4.210 24 C -0.225 4.225 25 C -0.095 4.095 26 H 0.123 0.877 27 H 0.105 0.895 28 H 0.127 0.873 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.002 0.998 32 H 0.014 0.986 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.165 0.835 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.373 -3.184 -22.091 26.019 hybrid contribution -1.273 -0.295 0.804 1.534 sum 12.100 -3.479 -21.288 24.732 Atomic orbital electron populations 1.23840 0.96134 1.01686 1.00126 1.23537 0.96886 0.99655 1.00579 1.21203 0.94228 0.94175 0.93885 1.62327 1.13370 1.46855 1.02908 1.19399 0.91281 0.95392 0.85790 1.21382 1.23252 1.00311 1.10208 0.92613 1.25793 0.98171 0.99433 0.95952 1.70079 1.39243 1.31603 1.16306 0.85511 0.78918 0.79788 0.77183 1.19926 1.20875 1.19261 1.20964 0.92812 0.93328 0.96217 1.19711 0.96439 1.00355 0.94798 1.20944 0.93380 0.95552 0.98868 1.20540 1.02666 1.04571 0.90087 1.19074 0.90673 0.95391 0.87705 1.86018 1.50253 1.71695 1.16481 1.23064 0.99679 0.98864 0.80689 1.21573 0.98644 1.01910 0.93122 1.21432 1.00024 1.01246 0.92985 1.21758 0.99099 1.01565 0.98568 1.21348 0.96611 1.03905 1.00614 1.20980 0.98665 0.98438 0.91436 0.87651 0.89483 0.87301 0.92349 0.89755 0.99838 0.98567 0.92915 0.94332 0.91434 0.85233 0.84381 0.91144 0.91481 0.91277 0.91029 0.91087 0.91282 0.92656 0.92501 0.91798 0.83533 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.31 14.32 67.79 0.97 -5.34 16 2 C -0.19 -6.69 7.40 25.65 0.19 -6.50 16 3 C 0.09 3.59 5.33 85.55 0.46 4.04 16 4 N -0.53 -22.96 4.66 -909.93 -4.24 -27.20 16 5 C 0.21 10.95 4.56 85.56 0.39 11.35 16 6 C -0.51 -29.17 8.52 25.60 0.22 -28.95 16 7 H 0.06 3.17 7.57 -2.91 -0.02 3.15 16 8 C 0.00 0.25 5.46 84.65 0.46 0.71 16 9 N -0.93 -56.01 13.29 21.45 0.28 -55.73 16 10 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 14 C 0.09 3.40 4.96 85.56 0.42 3.82 16 15 C -0.11 -3.47 4.89 -19.85 -0.10 -3.57 16 16 C -0.07 -2.03 9.69 22.25 0.22 -1.81 16 17 C -0.16 -4.28 9.99 22.36 0.22 -4.06 16 18 C 0.12 2.98 6.69 22.51 0.15 3.13 16 19 O -0.33 -7.64 10.14 -92.45 -0.94 -8.57 16 20 C 0.05 0.83 4.74 71.98 0.34 1.17 16 21 C -0.11 -1.47 5.58 30.60 0.17 -1.30 16 22 C -0.12 -1.14 5.93 30.60 0.18 -0.96 16 23 C -0.15 -1.32 9.91 71.98 0.71 -0.61 16 24 C -0.21 -4.90 9.04 22.37 0.20 -4.69 16 25 C -0.08 -2.05 7.88 22.25 0.18 -1.87 16 26 H 0.11 3.21 8.06 -2.91 -0.02 3.19 16 27 H 0.09 3.20 7.84 -2.91 -0.02 3.18 16 28 H 0.11 3.57 6.84 -2.91 -0.02 3.55 16 29 H 0.06 2.51 6.96 -2.39 -0.02 2.50 16 30 H 0.08 2.90 5.79 -2.39 -0.01 2.88 16 31 H -0.02 -0.91 6.70 -2.39 -0.02 -0.93 16 32 H 0.00 -0.21 7.84 -2.38 -0.02 -0.23 16 33 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 34 H 0.04 1.34 6.34 -2.39 -0.02 1.33 16 35 H 0.07 2.49 7.82 -2.39 -0.02 2.48 16 36 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.07 0.98 7.67 -2.39 -0.02 0.96 16 39 H 0.07 1.00 7.65 -2.39 -0.02 0.98 16 40 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.15 2.66 6.30 -2.91 -0.02 2.65 16 48 H 0.13 3.19 7.96 -2.91 -0.02 3.17 16 Total: -1.00 -64.57 386.59 3.43 -61.14 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.90 Total: 18.95 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 5.39 Total: -35.44 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -3.95 Total: -82.93 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.94 Total: -8.57 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -64.57 3.43 -61.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430111469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.793 kcal (2) G-P(sol) polarization free energy of solvation -64.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds