Wall clock time and date at job start Tue Mar 31 2020 11:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 H 1.09003 * 109.47174 * 54.05202 * 3 2 1 5 5 N 1.46897 * 109.47117 * 294.05283 * 3 2 1 6 6 C 1.46900 * 111.00360 * 94.66892 * 5 3 2 7 7 C 1.52999 * 109.46727 * 84.50424 * 6 5 3 8 8 C 1.50704 * 115.54885 * 274.25390 * 7 6 5 9 9 H 1.08003 * 119.99969 * 144.58845 * 8 7 6 10 10 C 1.37879 * 119.99972 * 324.58448 * 8 7 6 11 11 N 1.31505 * 120.00104 * 340.02696 * 10 8 7 12 12 Si 1.86805 * 119.99567 * 160.02474 * 10 8 7 13 13 H 1.48496 * 109.47161 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.46971 * 120.00691 * 12 10 8 15 15 H 1.48503 * 109.46778 * 239.99856 * 12 10 8 16 16 C 1.53002 * 117.49726 * 128.55022 * 7 6 5 17 17 C 1.53000 * 117.50271 * 59.92772 * 7 6 5 18 18 C 1.50703 * 109.46886 * 174.04935 * 3 2 1 19 19 C 1.38169 * 120.02677 * 94.36805 * 18 3 2 20 20 C 1.38243 * 120.05435 * 179.78748 * 19 18 3 21 21 C 1.50701 * 119.94130 * 180.20822 * 20 19 18 22 22 C 1.38286 * 120.11089 * 0.46587 * 20 19 18 23 23 C 1.38126 * 120.05800 * 359.78931 * 22 20 19 24 24 C 1.38711 * 120.02970 * 274.64156 * 18 3 2 25 25 O 1.35902 * 120.05209 * 359.95835 * 24 18 3 26 26 C 1.42906 * 116.99662 * 180.02562 * 25 24 18 27 27 H 1.08996 * 109.47191 * 187.36571 * 1 2 3 28 28 H 1.08999 * 109.46919 * 307.36783 * 1 2 3 29 29 H 1.08999 * 109.47184 * 67.36337 * 1 2 3 30 30 H 1.09001 * 109.46558 * 239.99934 * 2 1 3 31 31 H 1.08996 * 109.47152 * 120.00163 * 2 1 3 32 32 H 1.00905 * 111.00225 * 330.71119 * 5 3 2 33 33 H 1.08997 * 109.46759 * 324.50585 * 6 5 3 34 34 H 1.09000 * 109.46931 * 204.50168 * 6 5 3 35 35 H 0.97002 * 120.00166 * 184.91465 * 11 10 8 36 36 H 1.09000 * 117.49865 * 359.97438 * 16 7 6 37 37 H 1.09004 * 117.49854 * 145.01440 * 16 7 6 38 38 H 1.08999 * 117.49859 * 214.97500 * 17 7 6 39 39 H 1.08995 * 117.49481 * 359.97311 * 17 7 6 40 40 H 1.07999 * 119.96858 * 0.02562 * 19 18 3 41 41 H 1.09000 * 109.47069 * 270.25492 * 21 20 19 42 42 H 1.08994 * 109.47082 * 30.25681 * 21 20 19 43 43 H 1.09002 * 109.46611 * 150.25689 * 21 20 19 44 44 H 1.07997 * 119.97058 * 179.76414 * 22 20 19 45 45 H 1.07999 * 120.02726 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.47086 * 179.97438 * 26 25 24 47 47 H 1.09007 * 109.46812 * 300.00034 * 26 25 24 48 48 H 1.08999 * 109.47311 * 59.99342 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5924 1.9861 0.8320 5 7 1.6711 2.0923 -1.2647 6 6 0.4114 2.8354 -1.1269 7 6 0.6996 4.2265 -0.5588 8 6 0.7729 4.3123 0.9441 9 1 1.4725 4.9886 1.4128 10 6 -0.0532 3.5277 1.7205 11 7 -1.1469 3.0120 1.2034 12 14 0.3812 3.1970 3.5070 13 1 1.6526 3.8869 3.8431 14 1 -0.7044 3.7063 4.3828 15 1 0.5405 1.7353 3.7153 16 6 0.1226 5.4291 -1.3082 17 6 1.6242 5.1412 -1.3645 18 6 3.5399 1.4450 0.1473 19 6 4.3447 1.4959 -0.9746 20 6 5.7206 1.5027 -0.8400 21 6 6.5959 1.5631 -2.0652 22 6 6.2949 1.4487 0.4168 23 6 5.4948 1.3923 1.5413 24 6 4.1136 1.3904 1.4090 25 8 3.3241 1.3354 2.5138 26 6 3.9836 1.2816 3.7805 27 1 -0.3633 -1.0191 0.1317 28 1 -0.3633 0.6237 0.8167 29 1 -0.3633 0.3955 -0.9485 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6136 1.4189 -2.0140 33 1 -0.2553 2.2983 -0.4524 34 1 -0.0616 2.9329 -2.1041 35 1 -1.7644 2.5198 1.7668 36 1 -0.4619 5.2293 -2.2063 37 1 -0.2043 6.2827 -0.7143 38 1 2.2852 5.8053 -0.8077 39 1 2.0276 4.7517 -2.2992 40 1 3.8985 1.5344 -1.9574 41 1 6.8126 0.5510 -2.4072 42 1 6.0798 2.1104 -2.8538 43 1 7.5286 2.0714 -1.8206 44 1 7.3700 1.4503 0.5192 45 1 5.9438 1.3498 2.5226 46 1 3.2396 1.2415 4.5761 47 1 4.6124 0.3923 3.8252 48 1 4.6020 2.1704 3.9062 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430744063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:42 Heat of formation + Delta-G solvation = 11.171273 kcal Electronic energy + Delta-G solvation = -26959.920513 eV Core-core repulsion = 23594.855929 eV Total energy + Delta-G solvation = -3365.064584 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.94732 -37.65237 -37.04062 -35.31892 -32.14701 -31.67452 -30.72484 -30.63843 -27.55422 -26.15760 -25.64807 -25.42669 -23.22163 -21.78893 -20.90868 -20.81708 -19.62447 -18.68784 -17.62943 -16.14077 -15.84277 -15.37270 -15.00287 -14.75504 -14.49783 -14.06840 -13.82499 -13.80889 -13.47668 -13.40370 -13.30489 -12.75058 -12.19312 -12.12572 -11.84946 -11.83549 -11.53709 -11.48767 -11.42974 -11.16829 -10.94242 -10.77742 -10.67095 -10.59460 -10.43215 -10.29025 -10.11712 -10.05751 -9.78357 -9.20946 -8.85961 -8.50777 -8.31632 -7.98375 -7.51344 -7.21418 -6.00747 -3.94711 1.82334 1.86367 3.28087 3.39397 3.44884 3.74929 4.17165 4.43589 4.95030 5.08052 5.12327 5.26495 5.28291 5.35820 5.37792 5.54924 5.64022 5.69563 5.71782 5.77595 5.79037 5.81814 5.91102 6.07218 6.18915 6.21182 6.27380 6.38501 6.43928 6.50852 6.58370 6.66500 6.73073 6.76222 6.80226 6.94452 6.97466 7.01956 7.06376 7.12345 7.26193 7.29181 7.38755 7.55637 7.65973 7.87105 8.00553 8.25623 8.49592 8.61301 8.97613 9.57069 10.98692 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.007411 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.482595 B = 3777.473664 C = 4651.936309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.138 4.138 3 C 0.124 3.876 4 H 0.126 0.874 5 N -0.675 5.675 6 C 0.070 3.930 7 C 0.067 3.933 8 C -0.473 4.473 9 H 0.056 0.944 10 C 0.075 3.925 11 N -0.872 5.872 12 Si 0.869 3.131 13 H -0.271 1.271 14 H -0.291 1.291 15 H -0.273 1.273 16 C -0.211 4.211 17 C -0.191 4.191 18 C -0.072 4.072 19 C -0.058 4.058 20 C -0.134 4.134 21 C -0.103 4.103 22 C -0.097 4.097 23 C -0.212 4.212 24 C 0.123 3.877 25 O -0.304 6.304 26 C 0.027 3.973 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.316 0.684 33 H 0.110 0.890 34 H 0.028 0.972 35 H 0.259 0.741 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.114 0.886 45 H 0.120 0.880 46 H 0.092 0.908 47 H 0.051 0.949 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.359 -7.302 -1.314 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.177 4.177 3 C 0.014 3.986 4 H 0.144 0.856 5 N -0.303 5.303 6 C -0.057 4.057 7 C 0.066 3.934 8 C -0.510 4.510 9 H 0.074 0.926 10 C -0.126 4.126 11 N -0.511 5.511 12 Si 0.697 3.303 13 H -0.196 1.196 14 H -0.218 1.218 15 H -0.198 1.198 16 C -0.250 4.250 17 C -0.229 4.229 18 C -0.073 4.073 19 C -0.076 4.076 20 C -0.135 4.135 21 C -0.160 4.160 22 C -0.115 4.115 23 C -0.230 4.230 24 C 0.078 3.922 25 O -0.217 6.217 26 C -0.068 4.068 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.149 0.851 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.132 0.868 45 H 0.137 0.863 46 H 0.110 0.890 47 H 0.069 0.931 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.396 -6.915 -1.148 12.539 hybrid contribution -0.100 -0.677 1.210 1.390 sum 10.296 -7.592 0.062 12.793 Atomic orbital electron populations 1.21904 0.95246 1.00486 1.03409 1.22137 0.96573 0.98011 1.00957 1.20604 0.89505 0.92586 0.95934 0.85641 1.60340 1.36437 1.28924 1.04645 1.22003 0.89414 0.95717 0.98587 1.18851 0.95571 0.86904 0.92088 1.20566 1.19814 1.21582 0.89043 0.92610 1.24820 0.94466 0.95641 0.97689 1.69909 1.09065 1.36764 1.35315 0.86878 0.78530 0.79035 0.85866 1.19557 1.21813 1.19825 1.23005 0.95004 1.04655 1.02303 1.22614 0.91888 1.06358 1.02038 1.19433 0.96894 1.01574 0.89417 1.20694 0.91544 0.96872 0.98521 1.19760 0.94299 1.04737 0.94659 1.20646 0.98463 1.01374 0.95528 1.20599 0.98658 1.00561 0.91700 1.21043 0.92495 1.10207 0.99294 1.18905 0.89103 0.97321 0.86899 1.86192 1.34328 1.88327 1.12809 1.22983 0.98831 1.00734 0.84277 0.94247 0.90576 0.92801 0.93089 0.92443 0.86795 0.87265 0.95335 0.93027 0.92262 0.90990 0.91665 0.91303 0.85114 0.92130 0.91761 0.92351 0.86842 0.86253 0.88969 0.93088 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.47 37.16 0.31 -2.51 16 2 C -0.14 -2.48 5.30 -26.73 -0.14 -2.62 16 3 C 0.12 2.50 1.98 -68.87 -0.14 2.37 16 4 H 0.13 3.02 4.14 -51.93 -0.21 2.81 16 5 N -0.68 -13.42 4.83 -107.95 -0.52 -13.94 16 6 C 0.07 1.60 4.81 -3.82 -0.02 1.58 16 7 C 0.07 1.66 1.89 -155.66 -0.29 1.37 16 8 C -0.47 -12.85 7.96 -34.44 -0.27 -13.12 16 9 H 0.06 1.59 7.89 -52.48 -0.41 1.17 16 10 C 0.08 2.00 3.67 -17.82 -0.07 1.93 16 11 N -0.87 -23.08 10.19 55.43 0.56 -22.52 16 12 Si 0.87 20.92 29.31 -169.99 -4.98 15.94 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 C -0.21 -5.00 9.88 -26.73 -0.26 -5.27 16 17 C -0.19 -4.42 9.83 -26.73 -0.26 -4.68 16 18 C -0.07 -1.37 5.07 -104.47 -0.53 -1.90 16 19 C -0.06 -0.99 8.97 -39.60 -0.36 -1.34 16 20 C -0.13 -2.01 5.88 -104.60 -0.62 -2.63 16 21 C -0.10 -1.20 10.01 36.01 0.36 -0.84 16 22 C -0.10 -1.42 9.69 -39.60 -0.38 -1.80 16 23 C -0.21 -3.34 9.04 -39.43 -0.36 -3.69 16 24 C 0.12 2.29 6.66 -39.22 -0.26 2.03 16 25 O -0.30 -5.84 9.63 -19.43 -0.19 -6.02 16 26 C 0.03 0.39 9.81 101.05 0.99 1.39 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.63 6.87 -51.93 -0.36 1.27 16 29 H 0.05 0.99 6.78 -51.93 -0.35 0.64 16 30 H 0.05 0.82 8.00 -51.93 -0.42 0.40 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.32 5.53 8.19 -39.29 -0.32 5.20 16 33 H 0.11 2.62 2.54 -51.93 -0.13 2.49 16 34 H 0.03 0.63 7.90 -51.93 -0.41 0.21 16 35 H 0.26 6.61 8.32 -40.82 -0.34 6.27 16 36 H 0.06 1.32 8.05 -51.93 -0.42 0.90 16 37 H 0.07 1.74 8.14 -51.93 -0.42 1.31 16 38 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.13 2.11 7.18 -52.49 -0.38 1.73 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 43 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 44 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 45 H 0.12 1.59 6.30 -52.49 -0.33 1.26 16 46 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 48 H 0.05 0.71 7.66 -51.93 -0.40 0.31 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -28.15 372.88 -9.69 -37.84 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -7.90 Total: 12.83 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: -2.29 Total: -29.75 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.04 Total: -36.46 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.19 Total: -6.02 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.98 Total: 15.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.15 -9.69 -37.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430744063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.016 kcal (2) G-P(sol) polarization free energy of solvation -28.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds