Wall clock time and date at job start Tue Mar 31 2020 11:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 H 1.09003 * 109.47174 * 54.05202 * 3 2 1 5 5 N 1.46897 * 109.47117 * 294.05283 * 3 2 1 6 6 C 1.46900 * 111.00360 * 94.66892 * 5 3 2 7 7 C 1.52999 * 109.46727 * 84.50424 * 6 5 3 8 8 C 1.50704 * 115.54885 * 274.25390 * 7 6 5 9 9 H 1.08003 * 119.99969 * 144.58845 * 8 7 6 10 10 C 1.37879 * 119.99972 * 324.58448 * 8 7 6 11 11 N 1.31505 * 120.00104 * 340.02696 * 10 8 7 12 12 Si 1.86805 * 119.99567 * 160.02474 * 10 8 7 13 13 H 1.48496 * 109.47161 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.46971 * 120.00691 * 12 10 8 15 15 H 1.48503 * 109.46778 * 239.99856 * 12 10 8 16 16 C 1.53002 * 117.49726 * 128.55022 * 7 6 5 17 17 C 1.53000 * 117.50271 * 59.92772 * 7 6 5 18 18 C 1.50703 * 109.46886 * 174.04935 * 3 2 1 19 19 C 1.38169 * 120.02677 * 94.36805 * 18 3 2 20 20 C 1.38243 * 120.05435 * 179.78748 * 19 18 3 21 21 C 1.50701 * 119.94130 * 180.20822 * 20 19 18 22 22 C 1.38286 * 120.11089 * 0.46587 * 20 19 18 23 23 C 1.38126 * 120.05800 * 359.78931 * 22 20 19 24 24 C 1.38711 * 120.02970 * 274.64156 * 18 3 2 25 25 O 1.35902 * 120.05209 * 359.95835 * 24 18 3 26 26 C 1.42906 * 116.99662 * 180.02562 * 25 24 18 27 27 H 1.08996 * 109.47191 * 187.36571 * 1 2 3 28 28 H 1.08999 * 109.46919 * 307.36783 * 1 2 3 29 29 H 1.08999 * 109.47184 * 67.36337 * 1 2 3 30 30 H 1.09001 * 109.46558 * 239.99934 * 2 1 3 31 31 H 1.08996 * 109.47152 * 120.00163 * 2 1 3 32 32 H 1.00905 * 111.00225 * 330.71119 * 5 3 2 33 33 H 1.08997 * 109.46759 * 324.50585 * 6 5 3 34 34 H 1.09000 * 109.46931 * 204.50168 * 6 5 3 35 35 H 0.97002 * 120.00166 * 184.91465 * 11 10 8 36 36 H 1.09000 * 117.49865 * 359.97438 * 16 7 6 37 37 H 1.09004 * 117.49854 * 145.01440 * 16 7 6 38 38 H 1.08999 * 117.49859 * 214.97500 * 17 7 6 39 39 H 1.08995 * 117.49481 * 359.97311 * 17 7 6 40 40 H 1.07999 * 119.96858 * 0.02562 * 19 18 3 41 41 H 1.09000 * 109.47069 * 270.25492 * 21 20 19 42 42 H 1.08994 * 109.47082 * 30.25681 * 21 20 19 43 43 H 1.09002 * 109.46611 * 150.25689 * 21 20 19 44 44 H 1.07997 * 119.97058 * 179.76414 * 22 20 19 45 45 H 1.07999 * 120.02726 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.47086 * 179.97438 * 26 25 24 47 47 H 1.09007 * 109.46812 * 300.00034 * 26 25 24 48 48 H 1.08999 * 109.47311 * 59.99342 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5924 1.9861 0.8320 5 7 1.6711 2.0923 -1.2647 6 6 0.4114 2.8354 -1.1269 7 6 0.6996 4.2265 -0.5588 8 6 0.7729 4.3123 0.9441 9 1 1.4725 4.9886 1.4128 10 6 -0.0532 3.5277 1.7205 11 7 -1.1469 3.0120 1.2034 12 14 0.3812 3.1970 3.5070 13 1 1.6526 3.8869 3.8431 14 1 -0.7044 3.7063 4.3828 15 1 0.5405 1.7353 3.7153 16 6 0.1226 5.4291 -1.3082 17 6 1.6242 5.1412 -1.3645 18 6 3.5399 1.4450 0.1473 19 6 4.3447 1.4959 -0.9746 20 6 5.7206 1.5027 -0.8400 21 6 6.5959 1.5631 -2.0652 22 6 6.2949 1.4487 0.4168 23 6 5.4948 1.3923 1.5413 24 6 4.1136 1.3904 1.4090 25 8 3.3241 1.3354 2.5138 26 6 3.9836 1.2816 3.7805 27 1 -0.3633 -1.0191 0.1317 28 1 -0.3633 0.6237 0.8167 29 1 -0.3633 0.3955 -0.9485 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6136 1.4189 -2.0140 33 1 -0.2553 2.2983 -0.4524 34 1 -0.0616 2.9329 -2.1041 35 1 -1.7644 2.5198 1.7668 36 1 -0.4619 5.2293 -2.2063 37 1 -0.2043 6.2827 -0.7143 38 1 2.2852 5.8053 -0.8077 39 1 2.0276 4.7517 -2.2992 40 1 3.8985 1.5344 -1.9574 41 1 6.8126 0.5510 -2.4072 42 1 6.0798 2.1104 -2.8538 43 1 7.5286 2.0714 -1.8206 44 1 7.3700 1.4503 0.5192 45 1 5.9438 1.3498 2.5226 46 1 3.2396 1.2415 4.5761 47 1 4.6124 0.3923 3.8252 48 1 4.6020 2.1704 3.9062 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430744063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:41 Heat of formation + Delta-G solvation = -2.787629 kcal Electronic energy + Delta-G solvation = -26960.525816 eV Core-core repulsion = 23594.855929 eV Total energy + Delta-G solvation = -3365.669887 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.21655 -39.23912 -38.39973 -36.95790 -34.18269 -32.86098 -32.25745 -31.91103 -28.68772 -27.68172 -27.56108 -26.61101 -24.84389 -23.15166 -22.77595 -22.11483 -21.05162 -20.57168 -18.87909 -17.97970 -17.28470 -16.67642 -16.62157 -16.36097 -16.07533 -15.58005 -15.44946 -15.06649 -14.81680 -14.65595 -14.48787 -14.37501 -13.73348 -13.52371 -13.38585 -13.17839 -13.04016 -12.93646 -12.78636 -12.74073 -12.53531 -12.42314 -12.26356 -12.13274 -11.97375 -11.95206 -11.67997 -11.57034 -11.26755 -11.08845 -10.79057 -10.43764 -9.93113 -9.53725 -8.90883 -8.72661 -8.03781 -6.02849 0.59271 0.63860 1.32447 1.41628 1.48142 2.43277 2.54107 2.93618 3.03187 3.49860 3.86842 3.95715 4.06300 4.16715 4.22486 4.27524 4.32473 4.32919 4.42258 4.44074 4.57624 4.60438 4.67791 4.71944 4.86992 4.91019 4.92354 4.97246 4.99081 5.03323 5.07352 5.13584 5.17539 5.22794 5.23571 5.28668 5.42015 5.46736 5.50821 5.58006 5.65803 5.67950 5.77493 5.85975 6.09522 6.14633 6.52008 6.60239 6.64038 6.86485 7.02666 7.50237 8.93036 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.007411 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.482595 B = 3777.473664 C = 4651.936309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.128 3.872 4 H 0.087 0.913 5 N -0.669 5.669 6 C 0.077 3.923 7 C 0.046 3.954 8 C -0.493 4.493 9 H 0.029 0.971 10 C 0.058 3.942 11 N -0.880 5.880 12 Si 0.909 3.091 13 H -0.278 1.278 14 H -0.290 1.290 15 H -0.267 1.267 16 C -0.212 4.212 17 C -0.176 4.176 18 C -0.100 4.100 19 C -0.069 4.069 20 C -0.135 4.135 21 C -0.101 4.101 22 C -0.096 4.096 23 C -0.212 4.212 24 C 0.097 3.903 25 O -0.338 6.338 26 C 0.018 3.982 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.330 0.670 33 H 0.097 0.903 34 H 0.032 0.968 35 H 0.261 0.739 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.134 0.866 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.380 -8.477 -2.137 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C 0.018 3.982 4 H 0.104 0.896 5 N -0.298 5.298 6 C -0.052 4.052 7 C 0.045 3.955 8 C -0.530 4.530 9 H 0.048 0.952 10 C -0.144 4.144 11 N -0.518 5.518 12 Si 0.736 3.264 13 H -0.203 1.203 14 H -0.217 1.217 15 H -0.192 1.192 16 C -0.250 4.250 17 C -0.214 4.214 18 C -0.101 4.101 19 C -0.087 4.087 20 C -0.135 4.135 21 C -0.157 4.157 22 C -0.114 4.114 23 C -0.231 4.231 24 C 0.052 3.948 25 O -0.252 6.252 26 C -0.077 4.077 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.115 0.885 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.152 0.848 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.164 0.836 45 H 0.160 0.840 46 H 0.113 0.887 47 H 0.096 0.904 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.421 -8.096 -1.975 14.958 hybrid contribution -0.672 -0.302 1.487 1.659 sum 11.749 -8.398 -0.488 14.450 Atomic orbital electron populations 1.21809 0.95624 1.01037 1.01870 1.22053 0.96038 0.97104 1.01651 1.20377 0.90584 0.92927 0.94307 0.89551 1.60256 1.34779 1.29476 1.05274 1.21809 0.90389 0.94807 0.98153 1.18976 0.96897 0.88374 0.91209 1.20555 1.19733 1.22058 0.90663 0.95232 1.25098 0.94248 0.95240 0.99769 1.69953 1.09178 1.36634 1.36007 0.86278 0.77802 0.79033 0.83287 1.20281 1.21732 1.19203 1.22998 0.95689 1.03784 1.02537 1.22548 0.91368 1.05348 1.02104 1.19494 0.96288 1.03707 0.90650 1.20816 0.92551 0.97353 0.97979 1.20169 0.93925 1.03097 0.96319 1.20693 0.98396 1.02696 0.93946 1.21029 1.00273 0.98993 0.91075 1.21349 0.91504 1.09232 1.00985 1.19170 0.90286 0.98728 0.86666 1.86128 1.36090 1.88758 1.14193 1.23223 0.99363 1.02328 0.82765 0.92060 0.93834 0.93033 0.90892 0.93019 0.85195 0.88523 0.94901 0.92898 0.90727 0.92175 0.92568 0.89665 0.84820 0.90416 0.91703 0.90696 0.83554 0.84040 0.88716 0.90384 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 8.47 71.98 0.61 -4.74 16 2 C -0.13 -4.61 5.30 30.60 0.16 -4.45 16 3 C 0.13 5.20 1.98 44.17 0.09 5.29 16 4 H 0.09 4.26 4.14 -2.39 -0.01 4.25 16 5 N -0.67 -26.28 4.83 -495.45 -2.39 -28.68 16 6 C 0.08 3.49 4.81 86.30 0.41 3.90 16 7 C 0.05 2.33 1.89 -52.93 -0.10 2.23 16 8 C -0.49 -27.55 7.96 25.60 0.20 -27.35 16 9 H 0.03 1.75 7.89 -2.91 -0.02 1.73 16 10 C 0.06 3.12 3.67 84.66 0.31 3.43 16 11 N -0.88 -47.35 10.19 21.45 0.22 -47.13 16 12 Si 0.91 44.02 29.31 68.60 2.01 46.03 16 13 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 14 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 16 C -0.21 -10.02 9.88 30.59 0.30 -9.72 16 17 C -0.18 -8.10 9.83 30.59 0.30 -7.80 16 18 C -0.10 -3.78 5.07 -19.77 -0.10 -3.88 16 19 C -0.07 -2.24 8.97 22.25 0.20 -2.04 16 20 C -0.13 -3.69 5.88 -19.85 -0.12 -3.80 16 21 C -0.10 -1.98 10.01 71.24 0.71 -1.27 16 22 C -0.10 -2.50 9.69 22.25 0.22 -2.28 16 23 C -0.21 -6.27 9.04 22.37 0.20 -6.07 16 24 C 0.10 3.55 6.66 22.51 0.15 3.70 16 25 O -0.34 -13.05 9.63 -92.44 -0.89 -13.94 16 26 C 0.02 0.50 9.81 113.37 1.11 1.62 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.04 1.88 6.87 -2.39 -0.02 1.86 16 29 H 0.05 1.87 6.78 -2.39 -0.02 1.85 16 30 H 0.07 2.24 8.00 -2.39 -0.02 2.22 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.33 11.18 8.19 -89.69 -0.73 10.44 16 33 H 0.10 4.69 2.54 -2.39 -0.01 4.69 16 34 H 0.03 1.42 7.90 -2.39 -0.02 1.40 16 35 H 0.26 13.51 8.32 -92.71 -0.77 12.74 16 36 H 0.07 3.26 8.05 -2.39 -0.02 3.24 16 37 H 0.06 2.94 8.14 -2.38 -0.02 2.92 16 38 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 40 H 0.13 4.11 7.18 -2.91 -0.02 4.09 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 43 H 0.07 1.24 8.08 -2.39 -0.02 1.22 16 44 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 45 H 0.14 3.40 6.30 -2.91 -0.02 3.38 16 46 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 47 H 0.08 1.71 7.66 -2.38 -0.02 1.69 16 48 H 0.06 1.54 7.66 -2.39 -0.02 1.52 16 Total: -1.00 -61.67 372.88 3.83 -57.84 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: 0.21 Total: 39.10 kcal Atomic # 6 Polarization: -57.89 SS G_CDS: 4.67 Total: -53.23 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -2.17 Total: -75.81 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.89 Total: -13.94 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.01 Total: 46.03 kcal Total: -61.67 3.83 -57.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430744063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.055 kcal (2) G-P(sol) polarization free energy of solvation -61.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds