Wall clock time and date at job start Tue Mar 31 2020 11:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47332 * 2 1 4 4 H 1.09004 * 109.46726 * 305.33494 * 3 2 1 5 5 N 1.46901 * 109.47152 * 65.33574 * 3 2 1 6 6 C 1.46900 * 110.99951 * 260.82612 * 5 3 2 7 7 C 1.53003 * 109.46999 * 270.23039 * 6 5 3 8 8 C 1.50698 * 115.54738 * 281.10635 * 7 6 5 9 9 H 1.07999 * 120.00441 * 143.55236 * 8 7 6 10 10 C 1.37883 * 119.99987 * 323.54401 * 8 7 6 11 11 N 1.31510 * 119.99947 * 169.73798 * 10 8 7 12 12 Si 1.86802 * 119.99961 * 349.74052 * 10 8 7 13 13 H 1.48496 * 109.47114 * 96.13667 * 12 10 8 14 14 H 1.48503 * 109.46926 * 216.14212 * 12 10 8 15 15 H 1.48502 * 109.47129 * 336.13630 * 12 10 8 16 16 C 1.52997 * 117.50078 * 135.39281 * 7 6 5 17 17 C 1.52997 * 117.50073 * 66.76848 * 7 6 5 18 18 C 1.50705 * 109.47141 * 185.33781 * 3 2 1 19 19 C 1.38159 * 120.02301 * 261.99680 * 18 3 2 20 20 C 1.38251 * 120.05417 * 180.29710 * 19 18 3 21 21 C 1.50699 * 119.94628 * 179.70039 * 20 19 18 22 22 C 1.38292 * 120.10775 * 359.45018 * 20 19 18 23 23 C 1.38126 * 120.05393 * 0.54793 * 22 20 19 24 24 C 1.38703 * 120.02677 * 82.02160 * 18 3 2 25 25 O 1.35902 * 120.06013 * 359.95254 * 24 18 3 26 26 C 1.42903 * 117.00094 * 180.02562 * 25 24 18 27 27 H 1.09003 * 109.46602 * 57.58224 * 1 2 3 28 28 H 1.08998 * 109.47300 * 177.57779 * 1 2 3 29 29 H 1.08996 * 109.47090 * 297.58725 * 1 2 3 30 30 H 1.09003 * 109.47196 * 239.99890 * 2 1 3 31 31 H 1.09001 * 109.47257 * 120.00150 * 2 1 3 32 32 H 1.00896 * 110.99674 * 24.77640 * 5 3 2 33 33 H 1.08996 * 109.47089 * 30.22467 * 6 5 3 34 34 H 1.08994 * 109.47177 * 150.23034 * 6 5 3 35 35 H 0.97008 * 119.99909 * 179.97438 * 11 10 8 36 36 H 1.09001 * 117.50144 * 0.02562 * 16 7 6 37 37 H 1.09000 * 117.49823 * 145.01969 * 16 7 6 38 38 H 1.08992 * 117.50462 * 214.98054 * 17 7 6 39 39 H 1.09008 * 117.49913 * 359.97438 * 17 7 6 40 40 H 1.07998 * 119.98015 * 0.02562 * 19 18 3 41 41 H 1.09005 * 109.46528 * 90.00373 * 21 20 19 42 42 H 1.08998 * 109.46795 * 210.00090 * 21 20 19 43 43 H 1.08994 * 109.47020 * 330.00368 * 21 20 19 44 44 H 1.07994 * 119.97488 * 180.25431 * 22 20 19 45 45 H 1.08000 * 120.02648 * 179.69943 * 23 22 20 46 46 H 1.08992 * 109.47089 * 60.00251 * 26 25 24 47 47 H 1.09001 * 109.46496 * 180.02562 * 26 25 24 48 48 H 1.09002 * 109.47013 * 299.99816 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6008 1.9832 -0.8384 5 7 1.6584 2.0969 1.2586 6 6 0.4591 2.9257 1.0785 7 6 0.8739 4.3421 0.6749 8 6 1.3519 5.2245 1.7991 9 1 2.1556 5.9259 1.6307 10 6 0.7631 5.1364 3.0428 11 7 1.3040 5.7517 4.0715 12 14 -0.8030 4.1429 3.2664 13 1 -0.4605 2.7813 3.7502 14 1 -1.6783 4.8157 4.2596 15 1 -1.5150 4.0420 1.9672 16 6 0.1005 5.0068 -0.4656 17 6 1.5336 4.5221 -0.6937 18 6 3.5413 1.4445 -0.1322 19 6 4.3340 1.5752 0.9918 20 6 5.7112 1.5833 0.8706 21 6 6.5735 1.7327 2.0975 22 6 6.2989 1.4493 -0.3740 23 6 5.5107 1.3183 -1.5007 24 6 4.1282 1.3157 -1.3823 25 8 3.3505 1.1866 -2.4894 26 6 4.0234 1.0578 -3.7435 27 1 -0.3632 0.5509 -0.8676 28 1 -0.3634 -1.0267 -0.0434 29 1 -0.3633 0.4759 0.9108 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5217 1.4177 1.9922 33 1 -0.1669 2.4941 0.2975 34 1 -0.1003 2.9634 2.0132 35 1 0.8895 5.6901 4.9464 36 1 -0.7042 4.4353 -0.9282 37 1 -0.0629 6.0827 -0.4029 38 1 2.3130 5.2789 -0.7812 39 1 1.6725 3.6313 -1.3066 40 1 3.8776 1.6755 1.9654 41 1 6.7973 0.7473 2.5063 42 1 7.5031 2.2345 1.8292 43 1 6.0436 2.3241 2.8441 44 1 7.3749 1.4517 -0.4657 45 1 5.9700 1.2186 -2.4730 46 1 4.6576 0.1716 -3.7261 47 1 3.2878 0.9631 -4.5423 48 1 4.6378 1.9410 -3.9185 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430744064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:45 Heat of formation + Delta-G solvation = 25.251147 kcal Electronic energy + Delta-G solvation = -26420.317722 eV Core-core repulsion = 23055.863687 eV Total energy + Delta-G solvation = -3364.454035 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.19034 -38.10339 -37.29123 -35.61959 -32.04876 -31.83818 -31.27113 -30.86845 -27.77589 -26.99286 -25.79809 -25.33492 -23.60481 -22.14694 -21.26839 -21.02645 -19.90196 -18.92835 -17.83688 -16.41611 -16.01421 -15.84917 -15.60916 -15.09954 -14.64173 -14.32537 -13.98230 -13.85020 -13.65609 -13.47151 -13.40258 -13.07414 -12.68923 -12.49472 -12.22709 -12.12974 -11.95951 -11.79451 -11.62221 -11.54932 -11.25124 -11.02134 -10.89476 -10.79602 -10.64271 -10.41220 -10.33513 -10.06605 -9.54072 -9.36386 -9.10498 -8.58057 -8.41844 -8.21337 -7.73502 -7.60903 -6.01119 -3.90508 1.67875 1.73287 3.23765 3.40211 3.42746 3.44692 4.02585 4.45066 4.57096 4.91268 4.99976 5.07140 5.11209 5.14519 5.22331 5.26052 5.31238 5.37334 5.45220 5.54334 5.56306 5.71381 5.78525 5.82950 5.86673 5.90270 5.98647 6.00507 6.04580 6.09655 6.19163 6.20651 6.24713 6.34793 6.44120 6.45779 6.59837 6.63701 6.71904 6.78306 6.92870 6.99142 7.15663 7.17739 7.30342 7.62142 7.73913 7.92732 8.04218 8.67001 9.04982 9.64433 11.12221 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.005791 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.655737 B = 4833.647462 C = 5498.965870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.142 4.142 3 C 0.132 3.868 4 H 0.091 0.909 5 N -0.660 5.660 6 C 0.092 3.908 7 C 0.026 3.974 8 C -0.458 4.458 9 H 0.073 0.927 10 C 0.075 3.925 11 N -0.897 5.897 12 Si 0.894 3.106 13 H -0.286 1.286 14 H -0.304 1.304 15 H -0.267 1.267 16 C -0.218 4.218 17 C -0.181 4.181 18 C -0.083 4.083 19 C -0.045 4.045 20 C -0.126 4.126 21 C -0.108 4.108 22 C -0.092 4.092 23 C -0.211 4.211 24 C 0.117 3.883 25 O -0.315 6.315 26 C 0.030 3.970 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.331 0.669 33 H 0.028 0.972 34 H 0.053 0.947 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.140 0.860 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.050 0.950 47 H 0.094 0.906 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.807 -13.617 -10.764 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.181 4.181 3 C 0.022 3.978 4 H 0.109 0.891 5 N -0.289 5.289 6 C -0.036 4.036 7 C 0.024 3.976 8 C -0.495 4.495 9 H 0.091 0.909 10 C -0.126 4.126 11 N -0.534 5.534 12 Si 0.728 3.272 13 H -0.214 1.214 14 H -0.232 1.232 15 H -0.193 1.193 16 C -0.257 4.257 17 C -0.218 4.218 18 C -0.085 4.085 19 C -0.063 4.063 20 C -0.127 4.127 21 C -0.165 4.165 22 C -0.111 4.111 23 C -0.230 4.230 24 C 0.072 3.928 25 O -0.229 6.229 26 C -0.066 4.066 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.149 0.851 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.158 0.842 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.069 0.931 47 H 0.113 0.887 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.016 -13.035 -10.645 17.872 hybrid contribution -1.175 -1.084 -0.174 1.609 sum 4.840 -14.120 -10.820 18.435 Atomic orbital electron populations 1.21864 0.96002 1.01281 1.02049 1.22171 0.95749 0.97809 1.02339 1.20461 0.90795 0.92555 0.94020 0.89074 1.60145 1.37839 1.25233 1.05704 1.21986 0.89332 0.93842 0.98415 1.19252 0.97833 0.91748 0.88721 1.20280 1.18045 1.19219 0.91974 0.90894 1.24935 0.96791 0.95335 0.95585 1.69921 1.39048 1.44591 0.99868 0.86782 0.84451 0.78926 0.77046 1.21434 1.23243 1.19322 1.23203 0.93417 1.00349 1.08704 1.22687 0.94895 1.01401 1.02843 1.19203 0.95899 1.03585 0.89801 1.20854 0.91709 0.94764 0.98986 1.19848 0.94340 1.03495 0.94981 1.20698 0.98700 1.01511 0.95560 1.20683 0.98924 0.99696 0.91754 1.21014 0.92431 1.10213 0.99361 1.18806 0.89339 0.98226 0.86397 1.86072 1.34940 1.88108 1.13735 1.22966 0.98688 1.00785 0.84134 0.92605 0.92890 0.92726 0.91459 0.91877 0.85054 0.95427 0.92944 0.92820 0.91935 0.89932 0.90569 0.91030 0.84247 0.92002 0.92190 0.91113 0.86610 0.86189 0.93134 0.88721 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.68 37.16 0.32 -1.74 16 2 C -0.14 -1.98 5.25 -26.73 -0.14 -2.12 16 3 C 0.13 2.21 1.58 -68.86 -0.11 2.10 16 4 H 0.09 1.67 4.74 -51.93 -0.25 1.43 16 5 N -0.66 -12.67 4.70 -107.95 -0.51 -13.18 16 6 C 0.09 1.97 3.72 -3.82 -0.01 1.96 16 7 C 0.03 0.63 1.45 -155.66 -0.23 0.40 16 8 C -0.46 -13.06 9.58 -34.44 -0.33 -13.39 16 9 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 10 C 0.07 2.16 5.44 -17.82 -0.10 2.06 16 11 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 12 Si 0.89 22.17 24.31 -169.99 -4.13 18.04 16 13 H -0.29 -6.77 6.99 56.52 0.39 -6.38 16 14 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 15 H -0.27 -6.37 6.49 56.52 0.37 -6.01 16 16 C -0.22 -4.83 9.88 -26.73 -0.26 -5.09 16 17 C -0.18 -3.98 9.51 -26.73 -0.25 -4.23 16 18 C -0.08 -1.40 5.09 -104.48 -0.53 -1.93 16 19 C -0.05 -0.75 8.97 -39.61 -0.36 -1.11 16 20 C -0.13 -1.89 5.88 -104.60 -0.62 -2.50 16 21 C -0.11 -1.36 10.01 36.00 0.36 -1.00 16 22 C -0.09 -1.26 9.70 -39.60 -0.38 -1.65 16 23 C -0.21 -2.90 9.04 -39.43 -0.36 -3.26 16 24 C 0.12 1.81 6.66 -39.22 -0.26 1.55 16 25 O -0.31 -4.50 9.69 -19.43 -0.19 -4.69 16 26 C 0.03 0.29 9.81 101.05 0.99 1.28 16 27 H 0.05 0.76 8.00 -51.93 -0.42 0.34 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.78 6.69 -51.93 -0.35 0.44 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.84 8.02 -51.93 -0.42 0.42 16 32 H 0.33 5.88 8.19 -39.29 -0.32 5.56 16 33 H 0.03 0.55 5.89 -51.93 -0.31 0.24 16 34 H 0.05 1.20 1.81 -51.93 -0.09 1.11 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.06 1.26 8.09 -51.93 -0.42 0.84 16 37 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 38 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 39 H 0.07 1.47 5.74 -51.92 -0.30 1.18 16 40 H 0.14 2.44 7.18 -52.49 -0.38 2.06 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 43 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 44 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.12 1.33 6.30 -52.49 -0.33 1.00 16 46 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 47 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -31.21 368.90 -8.53 -39.74 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -7.77 Total: 9.82 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: -2.26 Total: -28.69 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.27 Total: -39.78 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.19 Total: -4.69 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.13 Total: 18.04 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.21 -8.53 -39.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430744064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.988 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds