Wall clock time and date at job start Tue Mar 31 2020 11:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47332 * 2 1 4 4 H 1.09004 * 109.46726 * 305.33494 * 3 2 1 5 5 N 1.46901 * 109.47152 * 65.33574 * 3 2 1 6 6 C 1.46900 * 110.99951 * 260.82612 * 5 3 2 7 7 C 1.53003 * 109.46999 * 270.23039 * 6 5 3 8 8 C 1.50698 * 115.54738 * 281.10635 * 7 6 5 9 9 H 1.07999 * 120.00441 * 143.55236 * 8 7 6 10 10 C 1.37883 * 119.99987 * 323.54401 * 8 7 6 11 11 N 1.31510 * 119.99947 * 169.73798 * 10 8 7 12 12 Si 1.86802 * 119.99961 * 349.74052 * 10 8 7 13 13 H 1.48496 * 109.47114 * 96.13667 * 12 10 8 14 14 H 1.48503 * 109.46926 * 216.14212 * 12 10 8 15 15 H 1.48502 * 109.47129 * 336.13630 * 12 10 8 16 16 C 1.52997 * 117.50078 * 135.39281 * 7 6 5 17 17 C 1.52997 * 117.50073 * 66.76848 * 7 6 5 18 18 C 1.50705 * 109.47141 * 185.33781 * 3 2 1 19 19 C 1.38159 * 120.02301 * 261.99680 * 18 3 2 20 20 C 1.38251 * 120.05417 * 180.29710 * 19 18 3 21 21 C 1.50699 * 119.94628 * 179.70039 * 20 19 18 22 22 C 1.38292 * 120.10775 * 359.45018 * 20 19 18 23 23 C 1.38126 * 120.05393 * 0.54793 * 22 20 19 24 24 C 1.38703 * 120.02677 * 82.02160 * 18 3 2 25 25 O 1.35902 * 120.06013 * 359.95254 * 24 18 3 26 26 C 1.42903 * 117.00094 * 180.02562 * 25 24 18 27 27 H 1.09003 * 109.46602 * 57.58224 * 1 2 3 28 28 H 1.08998 * 109.47300 * 177.57779 * 1 2 3 29 29 H 1.08996 * 109.47090 * 297.58725 * 1 2 3 30 30 H 1.09003 * 109.47196 * 239.99890 * 2 1 3 31 31 H 1.09001 * 109.47257 * 120.00150 * 2 1 3 32 32 H 1.00896 * 110.99674 * 24.77640 * 5 3 2 33 33 H 1.08996 * 109.47089 * 30.22467 * 6 5 3 34 34 H 1.08994 * 109.47177 * 150.23034 * 6 5 3 35 35 H 0.97008 * 119.99909 * 179.97438 * 11 10 8 36 36 H 1.09001 * 117.50144 * 0.02562 * 16 7 6 37 37 H 1.09000 * 117.49823 * 145.01969 * 16 7 6 38 38 H 1.08992 * 117.50462 * 214.98054 * 17 7 6 39 39 H 1.09008 * 117.49913 * 359.97438 * 17 7 6 40 40 H 1.07998 * 119.98015 * 0.02562 * 19 18 3 41 41 H 1.09005 * 109.46528 * 90.00373 * 21 20 19 42 42 H 1.08998 * 109.46795 * 210.00090 * 21 20 19 43 43 H 1.08994 * 109.47020 * 330.00368 * 21 20 19 44 44 H 1.07994 * 119.97488 * 180.25431 * 22 20 19 45 45 H 1.08000 * 120.02648 * 179.69943 * 23 22 20 46 46 H 1.08992 * 109.47089 * 60.00251 * 26 25 24 47 47 H 1.09001 * 109.46496 * 180.02562 * 26 25 24 48 48 H 1.09002 * 109.47013 * 299.99816 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6008 1.9832 -0.8384 5 7 1.6584 2.0969 1.2586 6 6 0.4591 2.9257 1.0785 7 6 0.8739 4.3421 0.6749 8 6 1.3519 5.2245 1.7991 9 1 2.1556 5.9259 1.6307 10 6 0.7631 5.1364 3.0428 11 7 1.3040 5.7517 4.0715 12 14 -0.8030 4.1429 3.2664 13 1 -0.4605 2.7813 3.7502 14 1 -1.6783 4.8157 4.2596 15 1 -1.5150 4.0420 1.9672 16 6 0.1005 5.0068 -0.4656 17 6 1.5336 4.5221 -0.6937 18 6 3.5413 1.4445 -0.1322 19 6 4.3340 1.5752 0.9918 20 6 5.7112 1.5833 0.8706 21 6 6.5735 1.7327 2.0975 22 6 6.2989 1.4493 -0.3740 23 6 5.5107 1.3183 -1.5007 24 6 4.1282 1.3157 -1.3823 25 8 3.3505 1.1866 -2.4894 26 6 4.0234 1.0578 -3.7435 27 1 -0.3632 0.5509 -0.8676 28 1 -0.3634 -1.0267 -0.0434 29 1 -0.3633 0.4759 0.9108 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5217 1.4177 1.9922 33 1 -0.1669 2.4941 0.2975 34 1 -0.1003 2.9634 2.0132 35 1 0.8895 5.6901 4.9464 36 1 -0.7042 4.4353 -0.9282 37 1 -0.0629 6.0827 -0.4029 38 1 2.3130 5.2789 -0.7812 39 1 1.6725 3.6313 -1.3066 40 1 3.8776 1.6755 1.9654 41 1 6.7973 0.7473 2.5063 42 1 7.5031 2.2345 1.8292 43 1 6.0436 2.3241 2.8441 44 1 7.3749 1.4517 -0.4657 45 1 5.9700 1.2186 -2.4730 46 1 4.6576 0.1716 -3.7261 47 1 3.2878 0.9631 -4.5423 48 1 4.6378 1.9410 -3.9185 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430744064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:44 Heat of formation + Delta-G solvation = 6.624028 kcal Electronic energy + Delta-G solvation = -26421.125454 eV Core-core repulsion = 23055.863687 eV Total energy + Delta-G solvation = -3365.261767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.30450 -39.58185 -38.44959 -37.11817 -34.24471 -33.04253 -32.51649 -31.99042 -28.76808 -28.51494 -27.28488 -26.62144 -25.16103 -23.34867 -22.95135 -22.15616 -21.14885 -20.89407 -18.90343 -18.20648 -17.67504 -17.20814 -16.57082 -16.35784 -16.12740 -15.61547 -15.45816 -15.03097 -14.92305 -14.88774 -14.64094 -14.44425 -14.21763 -13.99883 -13.75951 -13.39460 -13.13747 -12.92460 -12.84247 -12.76024 -12.53348 -12.39480 -12.26984 -12.23524 -12.08292 -11.74695 -11.66171 -11.57121 -11.33660 -11.17676 -11.10777 -10.42793 -10.27930 -9.59698 -9.13909 -8.78480 -8.23985 -6.18351 0.54216 0.59744 1.26662 1.39462 1.48878 2.36081 2.50716 2.86977 2.92357 3.25573 3.61641 3.82217 4.00412 4.06114 4.12127 4.14741 4.21451 4.22978 4.28047 4.40232 4.45108 4.47847 4.50949 4.53859 4.63236 4.65066 4.75797 4.81952 4.85494 4.88882 4.90275 4.94714 4.96226 5.05341 5.08510 5.15938 5.19063 5.30384 5.33305 5.35451 5.49522 5.51400 5.59287 5.77274 5.84195 6.03249 6.32335 6.39552 6.59187 6.62567 6.79353 7.39998 8.93525 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.005791 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.655737 B = 4833.647462 C = 5498.965870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.132 4.132 3 C 0.139 3.861 4 H 0.077 0.923 5 N -0.675 5.675 6 C 0.100 3.900 7 C 0.002 3.998 8 C -0.466 4.466 9 H 0.019 0.981 10 C 0.021 3.979 11 N -0.947 5.947 12 Si 0.960 3.040 13 H -0.268 1.268 14 H -0.310 1.310 15 H -0.246 1.246 16 C -0.205 4.205 17 C -0.167 4.167 18 C -0.106 4.106 19 C -0.069 4.069 20 C -0.140 4.140 21 C -0.105 4.105 22 C -0.092 4.092 23 C -0.210 4.210 24 C 0.109 3.891 25 O -0.331 6.331 26 C 0.020 3.980 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.338 0.662 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.264 0.736 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.145 0.855 45 H 0.149 0.851 46 H 0.067 0.933 47 H 0.115 0.885 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.332 -16.163 -13.024 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.171 4.171 3 C 0.030 3.970 4 H 0.095 0.905 5 N -0.305 5.305 6 C -0.028 4.028 7 C 0.001 3.999 8 C -0.504 4.504 9 H 0.038 0.962 10 C -0.176 4.176 11 N -0.587 5.587 12 Si 0.790 3.210 13 H -0.195 1.195 14 H -0.239 1.239 15 H -0.171 1.171 16 C -0.243 4.243 17 C -0.204 4.204 18 C -0.107 4.107 19 C -0.088 4.088 20 C -0.140 4.140 21 C -0.162 4.162 22 C -0.110 4.110 23 C -0.228 4.228 24 C 0.064 3.936 25 O -0.246 6.246 26 C -0.074 4.074 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.157 0.843 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.163 0.837 45 H 0.167 0.833 46 H 0.085 0.915 47 H 0.133 0.867 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.551 -15.598 -12.943 21.015 hybrid contribution -0.861 -0.222 0.428 0.987 sum 4.690 -15.821 -12.515 20.710 Atomic orbital electron populations 1.21852 0.95189 1.02568 1.01383 1.22067 0.96320 0.95931 1.02806 1.20380 0.90971 0.93710 0.91958 0.90542 1.60053 1.37018 1.26084 1.07328 1.21795 0.90213 0.92561 0.98249 1.19243 0.99847 0.92847 0.88008 1.20400 1.16743 1.19122 0.94091 0.96238 1.25744 1.00214 0.96679 0.94930 1.70077 1.41087 1.46984 1.00558 0.85707 0.79809 0.77833 0.77648 1.19542 1.23904 1.17076 1.23216 0.94149 1.00181 1.06736 1.22598 0.94632 1.01535 1.01663 1.19298 0.95907 1.04861 0.90637 1.20823 0.92869 0.96650 0.98411 1.20131 0.93942 1.03447 0.96519 1.20703 0.98696 1.02389 0.94397 1.21035 1.00487 0.98469 0.91043 1.21377 0.91886 1.08850 1.00730 1.18895 0.90127 0.98154 0.86426 1.86041 1.35894 1.87980 1.14640 1.23278 0.99697 1.01758 0.82705 0.92732 0.90754 0.93755 0.90823 0.91475 0.84315 0.93131 0.94198 0.92745 0.88831 0.90827 0.92405 0.89066 0.86243 0.90231 0.90585 0.93071 0.83727 0.83317 0.91466 0.86690 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 8.68 71.98 0.62 -3.02 16 2 C -0.13 -3.45 5.25 30.60 0.16 -3.29 16 3 C 0.14 4.53 1.58 44.17 0.07 4.59 16 4 H 0.08 2.69 4.74 -2.38 -0.01 2.68 16 5 N -0.67 -25.64 4.70 -495.43 -2.33 -27.97 16 6 C 0.10 4.14 3.72 86.30 0.32 4.46 16 7 C 0.00 0.10 1.45 -52.93 -0.08 0.02 16 8 C -0.47 -27.66 9.58 25.60 0.25 -27.41 16 9 H 0.02 1.31 8.06 -2.91 -0.02 1.29 16 10 C 0.02 1.25 5.44 84.66 0.46 1.71 16 11 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 12 Si 0.96 45.98 24.31 68.60 1.67 47.65 16 13 H -0.27 -11.98 6.99 99.48 0.69 -11.28 16 14 H -0.31 -15.00 7.11 99.48 0.71 -14.29 16 15 H -0.25 -10.85 6.49 99.48 0.65 -10.21 16 16 C -0.20 -8.72 9.88 30.59 0.30 -8.42 16 17 C -0.17 -7.27 9.51 30.59 0.29 -6.98 16 18 C -0.11 -3.49 5.09 -19.77 -0.10 -3.59 16 19 C -0.07 -2.36 8.97 22.25 0.20 -2.16 16 20 C -0.14 -4.13 5.88 -19.85 -0.12 -4.25 16 21 C -0.11 -2.62 10.01 71.24 0.71 -1.91 16 22 C -0.09 -2.33 9.70 22.26 0.22 -2.12 16 23 C -0.21 -5.25 9.04 22.37 0.20 -5.05 16 24 C 0.11 3.20 6.66 22.50 0.15 3.35 16 25 O -0.33 -8.73 9.69 -92.45 -0.90 -9.63 16 26 C 0.02 0.33 9.81 113.37 1.11 1.44 16 27 H 0.05 1.31 8.00 -2.39 -0.02 1.29 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 1.15 6.69 -2.39 -0.02 1.13 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.69 8.02 -2.39 -0.02 1.67 16 32 H 0.34 11.87 8.19 -89.70 -0.73 11.14 16 33 H 0.05 1.85 5.89 -2.39 -0.01 1.84 16 34 H 0.04 1.76 1.81 -2.39 0.00 1.75 16 35 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 36 H 0.09 3.43 8.09 -2.39 -0.02 3.41 16 37 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 38 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.09 3.62 5.74 -2.38 -0.01 3.61 16 40 H 0.12 4.42 7.18 -2.91 -0.02 4.40 16 41 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 43 H 0.05 1.45 8.08 -2.39 -0.02 1.43 16 44 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 45 H 0.15 2.76 6.30 -2.91 -0.02 2.74 16 46 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 47 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 Total: -1.00 -70.45 368.90 3.67 -66.78 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: 0.15 Total: 35.81 kcal Atomic # 6 Polarization: -57.40 SS G_CDS: 4.77 Total: -52.63 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -2.03 Total: -87.99 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.90 Total: -9.63 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.67 Total: 47.65 kcal Total: -70.45 3.67 -66.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430744064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.409 kcal (2) G-P(sol) polarization free energy of solvation -70.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds