Wall clock time and date at job start Tue Mar 31 2020 10:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46934 * 2 1 4 4 C 1.53005 * 109.47049 * 119.99473 * 2 1 3 5 5 O 1.42897 * 109.47113 * 65.00295 * 4 2 1 6 6 C 1.35898 * 116.99977 * 179.97438 * 5 4 2 7 7 C 1.38753 * 120.05888 * 359.95780 * 6 5 4 8 8 C 1.38120 * 119.94757 * 180.02562 * 7 6 5 9 9 C 1.38291 * 120.05469 * 0.02562 * 8 7 6 10 10 C 1.38246 * 120.11052 * 0.02562 * 9 8 7 11 11 C 1.38165 * 120.05355 * 359.95873 * 10 9 8 12 12 C 1.50707 * 120.02442 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47306 * 260.00104 * 12 11 10 14 14 C 1.46898 * 110.99731 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.46518 * 185.34622 * 14 13 12 16 16 C 1.50703 * 115.54834 * 65.05123 * 15 14 13 17 17 H 1.07998 * 119.99952 * 265.44030 * 16 15 14 18 18 C 1.37878 * 119.99958 * 85.44269 * 16 15 14 19 19 N 1.31511 * 120.00101 * 353.59359 * 18 16 15 20 20 Si 1.86801 * 119.99918 * 173.59580 * 18 16 15 21 21 H 1.48499 * 109.47035 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47234 * 119.99853 * 20 18 16 23 23 H 1.48504 * 109.46835 * 239.99863 * 20 18 16 24 24 C 1.52994 * 117.50157 * 279.37848 * 15 14 13 25 25 C 1.52997 * 117.49620 * 210.71564 * 15 14 13 26 26 H 1.09004 * 109.47682 * 60.00495 * 1 2 3 27 27 H 1.09004 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47588 * 300.00197 * 1 2 3 29 29 H 1.08997 * 109.47588 * 239.99803 * 2 1 3 30 30 H 1.08997 * 109.47251 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46870 * 299.99507 * 3 2 1 32 32 H 1.08999 * 109.47625 * 59.99737 * 3 2 1 33 33 H 1.09001 * 109.46963 * 305.00285 * 4 2 1 34 34 H 1.09002 * 109.46879 * 185.00405 * 4 2 1 35 35 H 1.08009 * 120.02630 * 0.04350 * 7 6 5 36 36 H 1.08004 * 119.97176 * 180.29820 * 8 7 6 37 37 H 1.07997 * 119.94455 * 180.02562 * 9 8 7 38 38 H 1.07994 * 119.97118 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.46544 * 20.00352 * 12 11 10 40 40 H 1.09004 * 109.46670 * 139.99851 * 12 11 10 41 41 H 1.00900 * 110.99460 * 303.95753 * 13 12 11 42 42 H 1.08991 * 109.47230 * 305.34245 * 14 13 12 43 43 H 1.09000 * 109.47399 * 65.35129 * 14 13 12 44 44 H 0.97001 * 119.99939 * 179.97438 * 19 18 16 45 45 H 1.09005 * 117.49873 * 0.02562 * 24 15 14 46 46 H 1.09002 * 117.50091 * 145.02494 * 24 15 14 47 47 H 1.09002 * 117.49996 * 214.98070 * 25 15 14 48 48 H 1.08997 * 117.50384 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 8 1.6620 -2.0980 1.1922 6 6 2.0406 -2.8855 2.2331 7 6 2.7619 -2.3442 3.2876 8 6 3.1460 -3.1467 4.3441 9 6 2.8126 -4.4888 4.3512 10 6 2.0948 -5.0308 3.3013 11 6 1.7081 -4.2321 2.2423 12 6 0.9251 -4.8234 1.0984 13 7 1.8302 -5.0930 -0.0268 14 6 1.0999 -5.6709 -1.1629 15 6 2.0913 -6.0603 -2.2614 16 6 3.0580 -7.1600 -1.9043 17 1 4.0386 -6.9145 -1.5241 18 6 2.6905 -8.4794 -2.0631 19 7 1.4572 -8.7819 -2.4050 20 14 3.9445 -9.8372 -1.7923 21 1 5.2504 -9.2375 -1.4179 22 1 3.4787 -10.7309 -0.7016 23 1 4.1013 -10.6226 -3.0429 24 6 2.5949 -4.9494 -3.1849 25 6 1.6038 -5.9911 -3.7099 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1263 -0.6442 1.2953 35 1 3.0227 -1.2961 3.2824 36 1 3.7033 -2.7248 5.1674 37 1 3.1135 -5.1146 5.1784 38 1 1.8361 -6.0792 3.3090 39 1 0.4585 -5.7543 1.4205 40 1 0.1540 -4.1201 0.7841 41 1 2.3238 -4.2571 -0.3020 42 1 0.5567 -6.5564 -0.8332 43 1 0.3952 -4.9366 -1.5533 44 1 1.1988 -9.7101 -2.5171 45 1 2.2202 -3.9408 -3.0097 46 1 3.6253 -5.0140 -3.5346 47 1 1.9825 -6.7406 -4.4048 48 1 0.5767 -5.6686 -3.8804 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449297723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:29 Heat of formation + Delta-G solvation = -18.621935 kcal Electronic energy + Delta-G solvation = -25093.266116 eV Core-core repulsion = 21726.909602 eV Total energy + Delta-G solvation = -3366.356514 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.23942 -38.93861 -38.56067 -36.15418 -35.96022 -33.89466 -32.19537 -30.82264 -28.06694 -28.02869 -27.51623 -26.99310 -24.64148 -23.21690 -22.88779 -22.20816 -21.01980 -20.82848 -18.97240 -18.09668 -17.28236 -17.01528 -16.77439 -16.49315 -15.98526 -15.68588 -15.37894 -15.30021 -15.12640 -14.88374 -14.79527 -14.10729 -13.99759 -13.54757 -13.37422 -13.32773 -13.09269 -12.99008 -12.92841 -12.86441 -12.58114 -12.39647 -12.25066 -12.17461 -12.03545 -12.00560 -11.86748 -11.55211 -11.47460 -11.28291 -10.73274 -10.37263 -9.96918 -9.76558 -9.14100 -8.94866 -8.02259 -6.08354 0.41779 0.55638 1.41740 1.44151 1.55327 2.28603 2.48979 2.82300 3.27329 3.42012 3.73641 3.76789 3.87170 3.90869 3.97866 4.12657 4.18862 4.30035 4.35110 4.44364 4.48414 4.54112 4.57059 4.62421 4.66207 4.70148 4.73621 4.78234 4.84561 4.90353 4.97020 4.97644 5.00325 5.07103 5.11176 5.20056 5.26892 5.35266 5.38648 5.43455 5.56806 5.63195 5.68396 5.74948 5.88479 5.94802 6.34411 6.51186 6.54823 6.72578 6.94431 7.56531 9.07182 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012487 B = 0.004292 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.749149 B = 6522.952412 C = 8095.557212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.139 4.139 4 C 0.060 3.940 5 O -0.329 6.329 6 C 0.123 3.877 7 C -0.213 4.213 8 C -0.082 4.082 9 C -0.162 4.162 10 C -0.079 4.079 11 C -0.128 4.128 12 C 0.115 3.885 13 N -0.667 5.667 14 C 0.125 3.875 15 C 0.025 3.975 16 C -0.477 4.477 17 H 0.045 0.955 18 C 0.022 3.978 19 N -0.912 5.912 20 Si 0.945 3.055 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.282 1.282 24 C -0.188 4.188 25 C -0.162 4.162 26 H 0.064 0.936 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.126 0.874 39 H 0.064 0.936 40 H 0.027 0.973 41 H 0.334 0.666 42 H 0.043 0.957 43 H 0.001 0.999 44 H 0.256 0.744 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.059 0.941 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 19.307 12.074 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.196 4.196 4 C -0.015 4.015 5 O -0.243 6.243 6 C 0.078 3.922 7 C -0.232 4.232 8 C -0.100 4.100 9 C -0.180 4.180 10 C -0.098 4.098 11 C -0.129 4.129 12 C -0.014 4.014 13 N -0.297 5.297 14 C -0.004 4.004 15 C 0.024 3.976 16 C -0.515 4.515 17 H 0.063 0.937 18 C -0.177 4.177 19 N -0.551 5.551 20 Si 0.772 3.228 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.226 4.226 25 C -0.200 4.200 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.162 0.838 38 H 0.143 0.857 39 H 0.082 0.918 40 H 0.045 0.955 41 H 0.151 0.849 42 H 0.061 0.939 43 H 0.019 0.981 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.280 18.498 12.094 22.103 hybrid contribution -0.091 -0.419 -0.479 0.643 sum 0.189 18.079 11.615 21.490 Atomic orbital electron populations 1.21784 0.94661 1.01247 1.02438 1.21146 0.96731 0.96941 0.96615 1.21739 1.01533 0.93143 1.03211 1.23101 1.00077 0.78423 0.99895 1.86065 1.74437 1.22068 1.41701 1.18971 0.95123 0.90138 0.88000 1.21454 1.04234 1.01859 0.95604 1.21291 0.97569 0.93349 0.97821 1.21321 1.00930 0.96270 0.99455 1.21074 0.96480 0.99379 0.92855 1.19255 1.04472 0.91377 0.97759 1.20569 0.92933 0.98067 0.89825 1.60304 1.28788 1.33218 1.07432 1.21186 0.93373 0.95367 0.90521 1.18938 0.96438 0.94682 0.87498 1.20518 0.98881 0.90141 1.42000 0.93704 1.25573 0.96518 1.00357 0.95207 1.70123 1.17788 1.18045 1.49173 0.85705 0.80004 0.79678 0.77415 1.19571 1.20998 1.20806 1.22942 0.98086 0.93814 1.07719 1.22420 0.96602 1.00804 1.00214 0.91742 0.94325 0.91792 0.91584 0.91801 0.91199 0.91298 0.90832 0.91315 0.83482 0.82852 0.83784 0.85653 0.91796 0.95517 0.84855 0.93886 0.98109 0.93512 0.89774 0.90561 0.92225 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.09 71.98 0.65 -2.03 16 2 C -0.10 -1.73 3.16 -10.79 -0.03 -1.76 16 3 C -0.14 -1.72 9.19 71.98 0.66 -1.06 16 4 C 0.06 1.17 4.12 71.98 0.30 1.46 16 5 O -0.33 -9.17 8.85 -92.41 -0.82 -9.99 16 6 C 0.12 3.54 6.66 22.51 0.15 3.69 16 7 C -0.21 -4.82 9.04 22.36 0.20 -4.62 16 8 C -0.08 -1.69 10.04 22.25 0.22 -1.46 16 9 C -0.16 -3.76 10.04 22.28 0.22 -3.53 16 10 C -0.08 -2.32 9.67 22.25 0.22 -2.10 16 11 C -0.13 -4.14 5.41 -19.77 -0.11 -4.24 16 12 C 0.11 4.25 5.47 85.56 0.47 4.72 16 13 N -0.67 -28.57 6.37 -517.92 -3.30 -31.87 16 14 C 0.12 5.94 5.51 86.31 0.48 6.42 16 15 C 0.03 1.28 1.55 -52.93 -0.08 1.20 16 16 C -0.48 -27.11 8.74 25.60 0.22 -26.88 16 17 H 0.04 2.61 7.82 -2.91 -0.02 2.59 16 18 C 0.02 1.26 5.39 84.66 0.46 1.72 16 19 N -0.91 -53.70 12.92 21.45 0.28 -53.43 16 20 Si 0.95 45.35 29.54 68.60 2.03 47.38 16 21 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 24 C -0.19 -8.36 9.96 30.62 0.30 -8.06 16 25 C -0.16 -7.91 9.41 30.62 0.29 -7.62 16 26 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.04 0.91 7.82 -2.38 -0.02 0.89 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 1.19 7.66 -2.39 -0.02 1.18 16 34 H 0.07 1.21 7.66 -2.39 -0.02 1.20 16 35 H 0.15 2.49 6.30 -2.91 -0.02 2.48 16 36 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.13 3.62 8.04 -2.91 -0.02 3.60 16 39 H 0.06 2.42 8.00 -2.39 -0.02 2.41 16 40 H 0.03 0.98 7.85 -2.38 -0.02 0.96 16 41 H 0.33 13.95 8.72 -89.69 -0.78 13.16 16 42 H 0.04 2.30 8.13 -2.39 -0.02 2.28 16 43 H 0.00 0.04 8.09 -2.39 -0.02 0.02 16 44 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 45 H 0.08 3.31 8.14 -2.38 -0.02 3.29 16 46 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 47 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 48 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -64.79 393.39 2.94 -61.85 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.13 Total: 30.23 kcal Atomic # 6 Polarization: -48.79 SS G_CDS: 4.62 Total: -44.17 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -3.02 Total: -85.30 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.82 Total: -9.99 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -64.79 2.94 -61.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449297723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.228 kcal (2) G-P(sol) polarization free energy of solvation -64.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds