Wall clock time and date at job start Tue Mar 31 2020 09:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46851 * 2 1 4 4 C 1.53003 * 109.46659 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47183 * 304.99244 * 4 3 2 6 6 N 1.46497 * 109.47485 * 64.99928 * 4 3 2 7 7 C 1.34781 * 119.99963 * 205.00076 * 6 4 3 8 8 O 1.21546 * 119.99626 * 359.97438 * 7 6 4 9 9 C 1.47885 * 119.99968 * 180.02562 * 7 6 4 10 10 C 1.39917 * 120.02351 * 359.72395 * 9 7 6 11 11 C 1.38330 * 120.35618 * 179.71721 * 10 9 7 12 12 C 1.37752 * 120.41353 * 0.56027 * 11 10 9 13 13 C 1.40748 * 120.03756 * 359.71899 * 12 11 10 14 14 C 1.41436 * 120.17879 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99997 * 24.43195 * 14 13 12 16 16 C 1.39935 * 120.00173 * 204.43382 * 14 13 12 17 17 N 1.30829 * 120.00164 * 17.88578 * 16 14 13 18 18 Si 1.86799 * 120.00287 * 197.89362 * 16 14 13 19 19 H 1.48504 * 109.46652 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47697 * 119.99595 * 18 16 14 21 21 H 1.48496 * 109.47175 * 240.00047 * 18 16 14 22 22 C 1.38993 * 120.02665 * 179.97438 * 9 7 6 23 23 C 1.53007 * 109.46922 * 184.99985 * 4 3 2 24 24 C 1.52998 * 109.46886 * 59.99736 * 23 4 3 25 25 C 1.53000 * 109.46985 * 179.97438 * 23 4 3 26 26 C 1.53001 * 109.46971 * 299.99895 * 23 4 3 27 27 H 1.08997 * 109.47239 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47240 * 300.00239 * 1 2 3 29 29 H 1.09008 * 109.47004 * 59.99698 * 1 2 3 30 30 H 1.08998 * 109.47017 * 119.99515 * 2 1 3 31 31 H 1.08999 * 109.47659 * 240.00076 * 2 1 3 32 32 H 1.08998 * 109.46914 * 299.99578 * 3 2 1 33 33 H 1.08992 * 109.47415 * 60.00068 * 3 2 1 34 34 H 0.97003 * 120.00163 * 24.99787 * 6 4 3 35 35 H 1.08001 * 119.82287 * 359.97438 * 10 9 7 36 36 H 1.08005 * 119.79596 * 180.25500 * 11 10 9 37 37 H 1.07999 * 119.98241 * 179.74281 * 12 11 10 38 38 H 0.96998 * 120.00467 * 179.97438 * 17 16 14 39 39 H 1.08005 * 120.20189 * 359.97438 * 22 9 7 40 40 H 1.08996 * 109.47567 * 60.00473 * 24 23 4 41 41 H 1.09001 * 109.47246 * 180.02562 * 24 23 4 42 42 H 1.09004 * 109.47644 * 300.00175 * 24 23 4 43 43 H 1.09002 * 109.46625 * 60.00169 * 25 23 4 44 44 H 1.09001 * 109.46839 * 179.97438 * 25 23 4 45 45 H 1.08997 * 109.47191 * 299.99964 * 25 23 4 46 46 H 1.08997 * 109.47015 * 59.99798 * 26 23 4 47 47 H 1.08998 * 109.46961 * 180.02562 * 26 23 4 48 48 H 1.08996 * 109.46811 * 299.99610 * 26 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8410 6 7 4.0578 0.8590 -1.2527 7 6 5.2798 0.2924 -1.3010 8 8 5.9771 0.2661 -0.3058 9 6 5.7725 -0.2962 -2.5650 10 6 4.9682 -0.2703 -3.7096 11 6 5.4245 -0.8136 -4.8971 12 6 6.6709 -1.3965 -4.9638 13 6 7.4917 -1.4371 -3.8213 14 6 8.7721 -2.0344 -3.8865 15 1 9.2888 -2.1022 -4.8325 16 6 9.3696 -2.5375 -2.7255 17 7 8.6401 -2.7804 -1.6670 18 14 11.2088 -2.8620 -2.6867 19 1 11.8017 -2.5077 -4.0013 20 1 11.8348 -2.0370 -1.6224 21 1 11.4519 -4.2997 -2.4058 22 6 7.0328 -0.8801 -2.6156 23 6 4.0800 2.8796 0.1251 24 6 3.5705 3.4890 1.4327 25 6 5.6100 2.8795 0.1251 26 6 3.5695 3.7071 -1.0562 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.5014 0.8803 -2.0470 35 1 3.9875 0.1800 -3.6669 36 1 4.7978 -0.7850 -5.7762 37 1 7.0185 -1.8222 -5.8935 38 1 9.0541 -3.1295 -0.8622 39 1 7.6556 -0.9056 -1.7335 40 1 3.9342 2.8995 2.2743 41 1 3.9335 4.5129 1.5221 42 1 2.4805 3.4890 1.4332 43 1 5.9733 2.4452 -0.8064 44 1 5.9734 3.9033 0.2142 45 1 5.9733 2.2901 0.9669 46 1 2.4796 3.7071 -1.0558 47 1 3.9333 4.7307 -0.9669 48 1 3.9326 3.2729 -1.9878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452661719.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:13 Heat of formation + Delta-G solvation = -50.612447 kcal Electronic energy + Delta-G solvation = -25649.520223 eV Core-core repulsion = 22281.776496 eV Total energy + Delta-G solvation = -3367.743727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -39.98205 -37.83872 -36.59462 -34.52584 -33.76236 -32.83517 -30.17364 -29.41430 -28.52923 -27.22878 -26.77055 -25.29908 -23.94991 -22.27268 -21.08871 -20.85439 -19.51737 -18.54595 -17.66977 -16.13030 -15.88088 -15.42092 -15.06757 -14.78920 -14.66377 -14.22819 -13.88292 -13.54825 -13.34424 -13.18366 -13.12840 -12.73515 -12.58689 -12.47218 -12.05841 -11.94726 -11.81644 -11.63440 -11.42772 -11.34822 -11.21771 -11.13759 -11.05454 -10.72659 -10.64098 -10.59298 -10.51560 -10.41792 -10.22690 -9.96344 -9.67011 -9.20823 -8.90572 -8.45586 -7.60346 -7.50279 -6.79265 -4.40249 2.25297 2.82012 3.08528 3.13318 3.15759 3.78338 3.90898 3.93793 4.60379 4.65556 4.87087 4.96905 5.07257 5.12999 5.18868 5.41717 5.52405 5.60121 5.63197 5.64971 5.66553 5.74361 5.84119 5.87209 5.90712 5.99420 6.04345 6.06056 6.11046 6.17945 6.23374 6.25162 6.29759 6.32866 6.38223 6.53246 6.73569 6.78784 6.98643 7.01956 7.07386 7.23029 7.40401 7.72483 7.79366 7.94943 8.15286 8.23599 8.52738 8.81854 8.85289 9.05316 10.15359 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.003949 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.641453 B = 7089.126093 C = 7621.856859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.129 4.129 4 C 0.157 3.843 5 H 0.084 0.916 6 N -0.728 5.728 7 C 0.565 3.435 8 O -0.541 6.541 9 C -0.128 4.128 10 C -0.218 4.218 11 C -0.098 4.098 12 C -0.213 4.213 13 C 0.099 3.901 14 C -0.460 4.460 15 H 0.081 0.919 16 C 0.074 3.926 17 N -0.783 5.783 18 Si 0.908 3.092 19 H -0.260 1.260 20 H -0.271 1.271 21 H -0.274 1.274 22 C -0.093 4.093 23 C -0.079 4.079 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.141 4.141 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.396 0.604 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.284 0.716 39 H 0.134 0.866 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.040 0.960 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.832 8.623 3.765 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.167 4.167 4 C 0.052 3.948 5 H 0.102 0.898 6 N -0.380 5.380 7 C 0.355 3.645 8 O -0.419 6.419 9 C -0.131 4.131 10 C -0.238 4.238 11 C -0.116 4.116 12 C -0.233 4.233 13 C 0.096 3.904 14 C -0.489 4.489 15 H 0.099 0.901 16 C -0.145 4.145 17 N -0.407 5.407 18 Si 0.732 3.268 19 H -0.183 1.183 20 H -0.196 1.196 21 H -0.199 1.199 22 C -0.113 4.113 23 C -0.080 4.080 24 C -0.198 4.198 25 C -0.190 4.190 26 C -0.198 4.198 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.231 0.769 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.151 0.849 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.314 8.489 4.738 14.917 hybrid contribution 0.463 -0.226 -0.358 0.627 sum -10.851 8.263 4.380 14.325 Atomic orbital electron populations 1.21765 0.96081 1.01490 1.01421 1.21544 0.95383 0.96730 1.02788 1.22015 0.94505 0.97319 1.02813 1.20909 0.92683 0.92897 0.88343 0.89782 1.45983 1.18484 1.60793 1.12779 1.18727 0.80356 0.76416 0.88968 1.90695 1.56357 1.58218 1.36664 1.19519 0.97245 1.04440 0.91889 1.20334 0.99081 1.10825 0.93577 1.20428 0.96052 0.99182 0.95987 1.21090 0.95089 1.08135 0.98987 1.17604 0.92497 0.89514 0.90772 1.19617 1.00852 1.33453 0.95018 0.90108 1.25952 1.00427 0.93254 0.94877 1.69799 1.37392 1.30229 1.03303 0.86259 0.82300 0.78585 0.79621 1.18343 1.19555 1.19927 1.21635 0.94013 0.96094 0.99574 1.20948 0.96766 0.95025 0.95298 1.21910 1.00592 1.00485 0.96807 1.21901 0.93498 1.00088 1.03533 1.21887 1.00342 0.99288 0.98297 0.92878 0.93025 0.92894 0.92008 0.91492 0.91369 0.90500 0.76866 0.89362 0.89033 0.88723 0.90530 0.84864 0.92618 0.92799 0.92576 0.92076 0.94140 0.91966 0.92825 0.93118 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.99 16 2 C -0.13 -1.39 5.82 -26.73 -0.16 -1.54 16 3 C -0.13 -1.34 4.03 -26.73 -0.11 -1.45 16 4 C 0.16 2.13 1.53 -67.93 -0.10 2.03 16 5 H 0.08 1.34 7.58 -51.93 -0.39 0.95 16 6 N -0.73 -11.55 3.60 -54.73 -0.20 -11.75 16 7 C 0.56 11.87 6.13 -12.31 -0.08 11.79 16 8 O -0.54 -12.90 13.45 5.33 0.07 -12.82 16 9 C -0.13 -2.97 5.87 -105.04 -0.62 -3.59 16 10 C -0.22 -4.54 9.55 -38.92 -0.37 -4.92 16 11 C -0.10 -2.09 10.01 -39.73 -0.40 -2.49 16 12 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 13 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 14 C -0.46 -12.14 9.05 -37.73 -0.34 -12.48 16 15 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 16 C 0.07 1.87 5.14 -17.34 -0.09 1.79 16 17 N -0.78 -20.78 10.96 55.55 0.61 -20.17 16 18 Si 0.91 18.84 29.60 -169.99 -5.03 13.81 16 19 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 C -0.09 -2.47 8.24 -38.44 -0.32 -2.78 16 23 C -0.08 -1.01 0.62 -154.50 -0.10 -1.10 16 24 C -0.14 -1.48 8.13 37.16 0.30 -1.18 16 25 C -0.13 -2.10 7.00 37.16 0.26 -1.84 16 26 C -0.14 -1.61 7.97 37.16 0.30 -1.32 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.83 7.75 -51.93 -0.40 0.42 16 32 H 0.07 0.66 6.71 -51.93 -0.35 0.31 16 33 H 0.08 0.71 6.17 -51.93 -0.32 0.39 16 34 H 0.40 5.63 6.62 -40.82 -0.27 5.36 16 35 H 0.09 1.52 6.38 -52.49 -0.33 1.19 16 36 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 39 H 0.13 3.83 5.74 -52.48 -0.30 3.53 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.50 6.32 -51.93 -0.33 0.17 16 43 H 0.06 1.14 5.77 -51.93 -0.30 0.84 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 1.08 7.53 -51.93 -0.39 0.69 16 46 H 0.05 0.52 6.54 -51.93 -0.34 0.18 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.75 7.60 -51.93 -0.39 0.35 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -28.37 371.44 -9.27 -37.64 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -7.90 Total: 11.20 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -2.42 Total: -23.51 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.41 Total: -31.92 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.07 Total: -12.82 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.37 -9.27 -37.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452661719.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.970 kcal (2) G-P(sol) polarization free energy of solvation -28.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds