Wall clock time and date at job start Tue Mar 31 2020 09:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46851 * 2 1 4 4 C 1.53003 * 109.46659 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47183 * 304.99244 * 4 3 2 6 6 N 1.46497 * 109.47485 * 64.99928 * 4 3 2 7 7 C 1.34781 * 119.99963 * 205.00076 * 6 4 3 8 8 O 1.21546 * 119.99626 * 359.97438 * 7 6 4 9 9 C 1.47885 * 119.99968 * 180.02562 * 7 6 4 10 10 C 1.39917 * 120.02351 * 359.72395 * 9 7 6 11 11 C 1.38330 * 120.35618 * 179.71721 * 10 9 7 12 12 C 1.37752 * 120.41353 * 0.56027 * 11 10 9 13 13 C 1.40748 * 120.03756 * 359.71899 * 12 11 10 14 14 C 1.41436 * 120.17879 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99997 * 24.43195 * 14 13 12 16 16 C 1.39935 * 120.00173 * 204.43382 * 14 13 12 17 17 N 1.30829 * 120.00164 * 17.88578 * 16 14 13 18 18 Si 1.86799 * 120.00287 * 197.89362 * 16 14 13 19 19 H 1.48504 * 109.46652 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47697 * 119.99595 * 18 16 14 21 21 H 1.48496 * 109.47175 * 240.00047 * 18 16 14 22 22 C 1.38993 * 120.02665 * 179.97438 * 9 7 6 23 23 C 1.53007 * 109.46922 * 184.99985 * 4 3 2 24 24 C 1.52998 * 109.46886 * 59.99736 * 23 4 3 25 25 C 1.53000 * 109.46985 * 179.97438 * 23 4 3 26 26 C 1.53001 * 109.46971 * 299.99895 * 23 4 3 27 27 H 1.08997 * 109.47239 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47240 * 300.00239 * 1 2 3 29 29 H 1.09008 * 109.47004 * 59.99698 * 1 2 3 30 30 H 1.08998 * 109.47017 * 119.99515 * 2 1 3 31 31 H 1.08999 * 109.47659 * 240.00076 * 2 1 3 32 32 H 1.08998 * 109.46914 * 299.99578 * 3 2 1 33 33 H 1.08992 * 109.47415 * 60.00068 * 3 2 1 34 34 H 0.97003 * 120.00163 * 24.99787 * 6 4 3 35 35 H 1.08001 * 119.82287 * 359.97438 * 10 9 7 36 36 H 1.08005 * 119.79596 * 180.25500 * 11 10 9 37 37 H 1.07999 * 119.98241 * 179.74281 * 12 11 10 38 38 H 0.96998 * 120.00467 * 179.97438 * 17 16 14 39 39 H 1.08005 * 120.20189 * 359.97438 * 22 9 7 40 40 H 1.08996 * 109.47567 * 60.00473 * 24 23 4 41 41 H 1.09001 * 109.47246 * 180.02562 * 24 23 4 42 42 H 1.09004 * 109.47644 * 300.00175 * 24 23 4 43 43 H 1.09002 * 109.46625 * 60.00169 * 25 23 4 44 44 H 1.09001 * 109.46839 * 179.97438 * 25 23 4 45 45 H 1.08997 * 109.47191 * 299.99964 * 25 23 4 46 46 H 1.08997 * 109.47015 * 59.99798 * 26 23 4 47 47 H 1.08998 * 109.46961 * 180.02562 * 26 23 4 48 48 H 1.08996 * 109.46811 * 299.99610 * 26 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8410 6 7 4.0578 0.8590 -1.2527 7 6 5.2798 0.2924 -1.3010 8 8 5.9771 0.2661 -0.3058 9 6 5.7725 -0.2962 -2.5650 10 6 4.9682 -0.2703 -3.7096 11 6 5.4245 -0.8136 -4.8971 12 6 6.6709 -1.3965 -4.9638 13 6 7.4917 -1.4371 -3.8213 14 6 8.7721 -2.0344 -3.8865 15 1 9.2888 -2.1022 -4.8325 16 6 9.3696 -2.5375 -2.7255 17 7 8.6401 -2.7804 -1.6670 18 14 11.2088 -2.8620 -2.6867 19 1 11.8017 -2.5077 -4.0013 20 1 11.8348 -2.0370 -1.6224 21 1 11.4519 -4.2997 -2.4058 22 6 7.0328 -0.8801 -2.6156 23 6 4.0800 2.8796 0.1251 24 6 3.5705 3.4890 1.4327 25 6 5.6100 2.8795 0.1251 26 6 3.5695 3.7071 -1.0562 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.5014 0.8803 -2.0470 35 1 3.9875 0.1800 -3.6669 36 1 4.7978 -0.7850 -5.7762 37 1 7.0185 -1.8222 -5.8935 38 1 9.0541 -3.1295 -0.8622 39 1 7.6556 -0.9056 -1.7335 40 1 3.9342 2.8995 2.2743 41 1 3.9335 4.5129 1.5221 42 1 2.4805 3.4890 1.4332 43 1 5.9733 2.4452 -0.8064 44 1 5.9734 3.9033 0.2142 45 1 5.9733 2.2901 0.9669 46 1 2.4796 3.7071 -1.0558 47 1 3.9333 4.7307 -0.9669 48 1 3.9326 3.2729 -1.9878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452661719.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:12 Heat of formation + Delta-G solvation = -64.807521 kcal Electronic energy + Delta-G solvation = -25650.135768 eV Core-core repulsion = 22281.776496 eV Total energy + Delta-G solvation = -3368.359272 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40581 -39.39893 -38.22814 -35.67346 -35.41882 -34.24106 -31.92556 -31.25710 -29.61340 -28.14790 -27.90849 -27.15994 -25.13183 -23.78980 -22.77900 -21.93483 -21.18990 -19.74819 -19.38904 -17.82532 -17.31757 -16.76356 -16.65814 -16.38995 -15.78054 -15.48273 -15.23929 -15.04393 -14.85123 -14.54283 -14.33730 -14.23746 -14.00993 -13.51669 -13.46566 -13.10507 -13.01163 -12.90207 -12.80057 -12.74002 -12.53906 -12.44741 -12.27911 -12.16479 -12.10684 -11.85858 -11.63664 -11.59280 -11.50399 -11.41712 -11.25072 -11.08462 -10.62145 -9.88616 -9.44493 -9.37068 -8.67439 -6.38732 0.42851 1.00712 1.34801 1.45561 1.51054 2.15656 2.20079 2.37328 2.80195 3.62007 3.70909 3.83849 4.01523 4.13024 4.14414 4.24995 4.27076 4.42329 4.55620 4.59963 4.66294 4.67497 4.79968 4.81925 4.84503 4.90394 4.94118 4.96829 5.06975 5.08316 5.10721 5.13678 5.20528 5.21097 5.29690 5.31797 5.34523 5.36287 5.47740 5.49817 5.52260 5.55804 5.73687 5.88227 5.94254 6.05925 6.29534 6.54601 6.77192 6.87858 6.95253 7.45499 8.29352 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.003949 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.641453 B = 7089.126093 C = 7621.856859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C -0.118 4.118 4 C 0.154 3.846 5 H 0.054 0.946 6 N -0.703 5.703 7 C 0.562 3.438 8 O -0.580 6.580 9 C -0.138 4.138 10 C -0.198 4.198 11 C -0.096 4.096 12 C -0.220 4.220 13 C 0.067 3.933 14 C -0.499 4.499 15 H 0.083 0.917 16 C 0.031 3.969 17 N -0.825 5.825 18 Si 0.981 3.019 19 H -0.251 1.251 20 H -0.271 1.271 21 H -0.263 1.263 22 C -0.132 4.132 23 C -0.076 4.076 24 C -0.136 4.136 25 C -0.128 4.128 26 C -0.137 4.137 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.408 0.592 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.107 0.893 38 H 0.286 0.714 39 H 0.097 0.903 40 H 0.045 0.955 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.026 0.974 44 H 0.054 0.946 45 H 0.033 0.967 46 H 0.081 0.919 47 H 0.058 0.942 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 10.436 2.775 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C -0.155 4.155 4 C 0.050 3.950 5 H 0.072 0.928 6 N -0.355 5.355 7 C 0.352 3.648 8 O -0.461 6.461 9 C -0.141 4.141 10 C -0.218 4.218 11 C -0.114 4.114 12 C -0.240 4.240 13 C 0.065 3.935 14 C -0.528 4.528 15 H 0.101 0.899 16 C -0.184 4.184 17 N -0.451 5.451 18 Si 0.801 3.199 19 H -0.174 1.174 20 H -0.196 1.196 21 H -0.188 1.188 22 C -0.152 4.152 23 C -0.077 4.077 24 C -0.194 4.194 25 C -0.186 4.186 26 C -0.194 4.194 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.245 0.755 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.483 10.320 3.723 18.170 hybrid contribution 1.259 -0.710 -0.082 1.447 sum -13.225 9.611 3.641 16.749 Atomic orbital electron populations 1.21723 0.94107 1.01822 1.02611 1.21542 0.97083 0.96763 1.01268 1.21995 0.91172 0.97439 1.04893 1.21114 0.95172 0.92837 0.85921 0.92818 1.45778 1.16506 1.58979 1.14266 1.18543 0.81675 0.76789 0.87784 1.90680 1.57850 1.59880 1.37680 1.19873 0.96585 1.03691 0.93959 1.20837 1.00137 1.08587 0.92223 1.20912 0.95368 0.97431 0.97666 1.21392 0.95993 1.08087 0.98501 1.17946 0.93474 0.90279 0.91786 1.19886 1.01945 1.35239 0.95739 0.89931 1.26835 1.04993 0.92499 0.94099 1.69900 1.39357 1.31802 1.04056 0.85177 0.76211 0.78752 0.79719 1.17409 1.19591 1.18783 1.21431 0.95657 0.99292 0.98869 1.20935 0.94215 0.94815 0.97731 1.21886 1.02184 1.00540 0.94756 1.21835 0.96419 0.99916 1.00426 1.21868 1.02045 0.99111 0.96412 0.93105 0.91778 0.91703 0.93580 0.93171 0.89211 0.88250 0.75465 0.84790 0.84495 0.87535 0.90387 0.88465 0.93596 0.91793 0.89906 0.95516 0.92729 0.94748 0.89985 0.92296 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 71.98 0.71 -1.43 16 2 C -0.13 -2.54 5.82 30.60 0.18 -2.36 16 3 C -0.12 -2.04 4.03 30.60 0.12 -1.92 16 4 C 0.15 4.01 1.53 45.00 0.07 4.08 16 5 H 0.05 1.76 7.58 -2.38 -0.02 1.74 16 6 N -0.70 -21.78 3.60 -445.35 -1.60 -23.38 16 7 C 0.56 24.46 6.13 86.80 0.53 24.99 16 8 O -0.58 -29.66 13.45 -3.86 -0.05 -29.71 16 9 C -0.14 -6.57 5.87 -20.14 -0.12 -6.69 16 10 C -0.20 -7.84 9.55 22.70 0.22 -7.62 16 11 C -0.10 -3.84 10.01 22.18 0.22 -3.62 16 12 C -0.22 -10.45 9.78 22.77 0.22 -10.23 16 13 C 0.07 3.73 5.57 -21.32 -0.12 3.61 16 14 C -0.50 -27.69 9.05 23.47 0.21 -27.48 16 15 H 0.08 4.34 7.91 -2.91 -0.02 4.32 16 16 C 0.03 1.63 5.14 85.25 0.44 2.06 16 17 N -0.83 -46.93 10.96 21.82 0.24 -46.70 16 18 Si 0.98 40.42 29.60 68.60 2.03 42.45 16 19 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 C -0.13 -7.44 8.24 23.01 0.19 -7.25 16 23 C -0.08 -1.81 0.62 -52.18 -0.03 -1.84 16 24 C -0.14 -2.50 8.13 71.98 0.59 -1.92 16 25 C -0.13 -4.19 7.00 71.98 0.50 -3.68 16 26 C -0.14 -2.68 7.97 71.98 0.57 -2.10 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.14 7.75 -2.39 -0.02 1.12 16 32 H 0.09 1.24 6.71 -2.39 -0.02 1.23 16 33 H 0.10 1.36 6.17 -2.39 -0.01 1.35 16 34 H 0.41 10.49 6.62 -92.71 -0.61 9.88 16 35 H 0.13 4.02 6.38 -2.91 -0.02 4.00 16 36 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 37 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 38 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 39 H 0.10 6.13 5.74 -2.91 -0.02 6.11 16 40 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.10 6.32 -2.39 -0.02 1.09 16 43 H 0.03 1.03 5.77 -2.39 -0.01 1.01 16 44 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.03 1.27 7.53 -2.39 -0.02 1.25 16 46 H 0.08 1.15 6.54 -2.39 -0.02 1.14 16 47 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.04 0.98 7.60 -2.39 -0.02 0.97 16 Total: -1.00 -68.98 371.44 5.45 -63.53 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: 0.33 Total: 37.20 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 4.51 Total: -43.38 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -1.37 Total: -70.08 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.05 Total: -29.71 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -68.98 5.45 -63.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452661719.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.282 kcal (2) G-P(sol) polarization free energy of solvation -68.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds