Wall clock time and date at job start Tue Mar 31 2020 08:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47396 * 2 1 4 4 C 1.52991 * 109.47111 * 120.00525 * 2 1 3 5 5 H 1.09004 * 109.47272 * 306.51644 * 4 2 1 6 6 C 1.50698 * 109.47781 * 66.51697 * 4 2 1 7 7 O 1.21278 * 120.00062 * 111.37652 * 6 4 2 8 8 N 1.34776 * 119.99657 * 291.38010 * 6 4 2 9 9 C 1.46507 * 119.99685 * 175.62384 * 8 6 4 10 10 C 1.52998 * 109.46863 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47306 * 299.99751 * 10 9 8 12 12 C 1.52997 * 109.47316 * 60.00195 * 10 9 8 13 13 C 1.50705 * 109.46907 * 180.02562 * 10 9 8 14 14 H 1.08001 * 120.00115 * 2.63835 * 13 10 9 15 15 C 1.37878 * 120.00039 * 182.63604 * 13 10 9 16 16 N 1.31514 * 120.00341 * 190.38651 * 15 13 10 17 17 Si 1.86802 * 120.00004 * 10.39184 * 15 13 10 18 18 H 1.48496 * 109.47367 * 91.60506 * 17 15 13 19 19 H 1.48495 * 109.47233 * 211.61320 * 17 15 13 20 20 H 1.48511 * 109.46771 * 331.60667 * 17 15 13 21 21 C 1.50702 * 109.47306 * 186.52093 * 4 2 1 22 22 C 1.38234 * 120.00480 * 119.99383 * 21 4 2 23 23 C 1.38227 * 120.00169 * 180.02562 * 22 21 4 24 24 C 1.38246 * 120.00169 * 359.95830 * 23 22 21 25 25 C 1.38231 * 119.99465 * 359.97438 * 24 23 22 26 26 C 1.38236 * 119.99591 * 299.97697 * 21 4 2 27 27 H 1.09004 * 109.46772 * 300.83346 * 1 2 3 28 28 H 1.08999 * 109.47634 * 60.82705 * 1 2 3 29 29 H 1.09002 * 109.47479 * 180.83132 * 1 2 3 30 30 H 1.09008 * 109.46707 * 240.00116 * 2 1 3 31 31 H 1.09003 * 109.46952 * 300.00403 * 3 2 1 32 32 H 1.08998 * 109.47165 * 60.00252 * 3 2 1 33 33 H 1.08996 * 109.47246 * 180.02562 * 3 2 1 34 34 H 0.97002 * 120.00458 * 355.62535 * 8 6 4 35 35 H 1.09003 * 109.47138 * 299.99888 * 9 8 6 36 36 H 1.09001 * 109.46840 * 60.00009 * 9 8 6 37 37 H 1.09005 * 109.46914 * 70.80545 * 11 10 9 38 38 H 1.08998 * 109.47223 * 190.80522 * 11 10 9 39 39 H 1.08996 * 109.47424 * 310.80642 * 11 10 9 40 40 H 1.09003 * 109.47294 * 59.99770 * 12 10 9 41 41 H 1.08997 * 109.47369 * 179.97438 * 12 10 9 42 42 H 1.09000 * 109.47262 * 299.99459 * 12 10 9 43 43 H 0.96996 * 120.00364 * 180.02562 * 16 15 13 44 44 H 1.07999 * 119.99644 * 359.97438 * 22 21 4 45 45 H 1.08003 * 120.00595 * 179.97438 * 23 22 21 46 46 H 1.07995 * 119.99730 * 179.72207 * 24 23 22 47 47 H 1.08007 * 120.00058 * 179.97438 * 25 24 23 48 48 H 1.08004 * 120.00225 * 359.97438 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.5845 -0.2793 2.1353 6 6 1.6737 -2.1810 1.1711 7 8 2.5403 -3.0167 1.0245 8 7 0.3831 -2.5578 1.2643 9 6 0.0169 -3.9660 1.0928 10 6 -1.4976 -4.1212 1.2452 11 6 -1.9210 -3.6502 2.6379 12 6 -2.2061 -3.2771 0.1839 13 6 -1.8742 -5.5698 1.0693 14 1 -1.1059 -6.3122 0.9114 15 6 -3.1996 -5.9474 1.1101 16 7 -3.5190 -7.2221 1.1624 17 14 -4.5419 -4.6483 1.0910 18 1 -4.9535 -4.3825 -0.3108 19 1 -5.7113 -5.1334 1.8669 20 1 -4.0275 -3.3962 1.7018 21 6 3.5383 -0.5831 1.3325 22 6 4.1158 0.0339 2.4264 23 6 5.4901 0.1611 2.5025 24 6 6.2872 -0.3296 1.4852 25 6 5.7098 -0.9479 0.3920 26 6 4.3353 -1.0739 0.3152 27 1 -0.3633 0.5268 0.8825 28 1 -0.3634 0.5009 -0.8973 29 1 -0.3634 -1.0275 0.0149 30 1 1.8933 -0.5139 -0.8901 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 -0.3034 -1.8967 1.4450 35 1 0.3181 -4.3015 0.1004 36 1 0.5220 -4.5674 1.8486 37 1 -1.8266 -2.5660 2.6990 38 1 -2.9575 -3.9353 2.8183 39 1 -1.2808 -4.1135 3.3885 40 1 -1.9045 -3.6127 -0.8083 41 1 -3.2850 -3.3881 0.2921 42 1 -1.9338 -2.2294 0.3115 43 1 -4.4515 -7.4877 1.1907 44 1 3.4931 0.4174 3.2211 45 1 5.9414 0.6436 3.3570 46 1 7.3606 -0.2262 1.5426 47 1 6.3324 -1.3310 -0.4031 48 1 3.8842 -1.5566 -0.5392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457996577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:12 Heat of formation + Delta-G solvation = -8.772979 kcal Electronic energy + Delta-G solvation = -25788.500216 eV Core-core repulsion = 22422.570785 eV Total energy + Delta-G solvation = -3365.929431 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.49822 -38.69976 -36.78597 -36.02351 -33.32372 -31.51925 -31.42957 -30.85620 -27.98497 -27.05396 -26.39089 -25.63131 -24.73031 -22.73554 -21.86135 -20.80343 -19.79422 -19.06548 -17.11412 -16.90426 -16.15620 -15.57865 -15.37549 -15.25348 -14.83829 -14.60829 -14.21817 -14.14732 -13.48922 -13.38455 -13.08131 -12.97827 -12.79980 -12.66222 -12.50822 -12.42177 -12.19649 -12.19517 -12.05994 -11.61548 -11.40379 -11.15209 -10.99255 -10.81041 -10.68148 -10.43810 -10.30084 -10.22301 -10.09458 -9.46843 -9.10147 -8.85874 -8.69735 -8.64138 -8.54935 -8.45341 -6.14983 -4.14029 1.33686 1.44214 2.94267 3.22434 3.28404 3.36614 3.54521 3.90732 4.33808 4.46530 4.64104 4.76408 4.92869 4.97551 5.08115 5.15721 5.16575 5.19198 5.29643 5.46765 5.50610 5.53545 5.64430 5.71258 5.74754 5.77797 5.94779 5.99772 6.01029 6.04154 6.05308 6.14536 6.16914 6.35195 6.44059 6.46578 6.51062 6.52242 6.61016 6.64486 6.67385 6.77506 6.94296 7.00227 7.19625 7.40413 7.69938 7.92508 8.43523 8.60182 8.89424 9.47747 10.98153 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025064 B = 0.003623 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.878122 B = 7725.673266 C = 8282.119377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.144 4.144 4 C -0.068 4.068 5 H 0.098 0.902 6 C 0.511 3.489 7 O -0.537 6.537 8 N -0.723 5.723 9 C 0.140 3.860 10 C 0.028 3.972 11 C -0.141 4.141 12 C -0.149 4.149 13 C -0.511 4.511 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.894 5.894 17 Si 0.883 3.117 18 H -0.287 1.287 19 H -0.304 1.304 20 H -0.244 1.244 21 C -0.057 4.057 22 C -0.115 4.115 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.079 4.079 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.398 0.602 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.021 0.979 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.043 0.957 42 H 0.030 0.970 43 H 0.264 0.736 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.119 0.881 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.197 19.652 -0.177 23.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.099 4.099 3 C -0.201 4.201 4 C -0.089 4.089 5 H 0.116 0.884 6 C 0.296 3.704 7 O -0.414 6.414 8 N -0.376 5.376 9 C 0.018 3.982 10 C 0.027 3.973 11 C -0.198 4.198 12 C -0.206 4.206 13 C -0.549 4.549 14 H 0.094 0.906 15 C -0.128 4.128 16 N -0.531 5.531 17 Si 0.715 3.285 18 H -0.215 1.215 19 H -0.233 1.233 20 H -0.170 1.170 21 C -0.058 4.058 22 C -0.133 4.133 23 C -0.144 4.144 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.097 4.097 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.235 0.765 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.074 0.926 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.137 0.863 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.656 18.874 -0.284 22.727 hybrid contribution -1.245 0.745 0.079 1.453 sum 11.411 19.620 -0.205 22.698 Atomic orbital electron populations 1.22279 0.94587 1.03607 1.02436 1.21022 0.96072 0.96359 0.96435 1.21840 1.01465 0.95033 1.01776 1.20472 0.93489 0.94097 1.00884 0.88388 1.20313 0.82935 0.90182 0.76956 1.90700 1.48335 1.53338 1.49060 1.46613 1.07562 1.11654 1.71775 1.21524 0.96604 0.78970 1.01119 1.18719 0.90033 0.96875 0.91670 1.22292 1.01698 0.96935 0.98888 1.22438 1.00059 0.97386 1.00736 1.20738 0.93576 0.90036 1.50542 0.90560 1.24991 0.98612 0.95088 0.94156 1.69927 1.18213 1.15387 1.49535 0.87345 0.80743 0.82672 0.77746 1.21463 1.23273 1.16980 1.19269 0.93443 0.98228 0.94851 1.20987 0.95044 0.99874 0.97381 1.21027 0.93630 1.00878 0.98868 1.21098 0.99517 0.99087 0.94502 1.21116 0.94936 0.99718 0.98430 1.20951 0.93329 0.96895 0.98575 0.92270 0.91892 0.90686 0.90516 0.92500 0.92568 0.92203 0.76486 0.92031 0.91919 0.96006 0.92628 0.93440 0.92795 0.93853 0.95117 0.92582 0.86362 0.86365 0.86485 0.86305 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 8.40 37.16 0.31 -1.40 16 2 C -0.08 -0.83 2.23 -90.63 -0.20 -1.03 16 3 C -0.14 -1.25 8.85 37.15 0.33 -0.92 16 4 C -0.07 -0.82 2.02 -92.93 -0.19 -1.01 16 5 H 0.10 1.02 7.87 -51.93 -0.41 0.61 16 6 C 0.51 8.17 6.89 -10.99 -0.08 8.10 16 7 O -0.54 -10.62 14.82 5.56 0.08 -10.54 16 8 N -0.72 -11.58 3.81 -60.29 -0.23 -11.81 16 9 C 0.14 2.78 4.48 -4.04 -0.02 2.76 16 10 C 0.03 0.60 0.50 -155.66 -0.08 0.53 16 11 C -0.14 -2.82 7.44 37.16 0.28 -2.54 16 12 C -0.15 -2.94 7.48 37.16 0.28 -2.66 16 13 C -0.51 -13.63 8.62 -34.44 -0.30 -13.92 16 14 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 15 C 0.07 2.04 5.36 -17.82 -0.10 1.95 16 16 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 17 Si 0.88 20.77 22.82 -169.99 -3.88 16.89 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 20 H -0.24 -5.15 4.43 56.52 0.25 -4.90 16 21 C -0.06 -0.72 2.95 -104.62 -0.31 -1.03 16 22 C -0.11 -1.28 9.67 -39.59 -0.38 -1.67 16 23 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 24 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 25 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 26 C -0.08 -1.03 7.81 -39.58 -0.31 -1.34 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.88 3.81 -51.93 -0.20 0.69 16 30 H 0.08 0.87 7.63 -51.92 -0.40 0.47 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.56 6.95 -51.93 -0.36 0.20 16 34 H 0.40 5.58 4.24 -40.82 -0.17 5.41 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.02 0.36 7.16 -51.93 -0.37 -0.01 16 38 H 0.05 1.18 4.32 -51.93 -0.22 0.96 16 39 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.04 0.91 2.24 -51.93 -0.12 0.79 16 42 H 0.03 0.49 5.59 -51.93 -0.29 0.20 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.12 1.10 7.95 -52.49 -0.42 0.68 16 45 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 46 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 47 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 48 H 0.12 1.63 7.40 -52.48 -0.39 1.24 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -30.93 357.63 -7.52 -38.45 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.70 Total: 6.95 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -1.95 Total: -19.41 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.54 Total: -37.72 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -3.88 Total: 16.89 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.93 -7.52 -38.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457996577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.673 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds